RNA–Protein interactions for RNA: ENST00000570668.1

SMG6-206, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 547 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-206ENST00000570668 NISCHQ9Y2I1 1504 aa27.25■■□□□ 1.95
SMG6-206ENST00000570668 CCDC180Q9P1Z9 1646 aa24.24■■□□□ 1.47
SMG6-206ENST00000570668 ABCC9O60706 1549 aa23.8■■□□□ 1.4
SMG6-206ENST00000570668 RB1CC1Q8TDY2 1594 aa22.86■■□□□ 1.25
SMG6-206ENST00000570668 NACADO15069 1562 aa22.84■■□□□ 1.25
SMG6-206ENST00000570668 DCAF8L2P0C7V8 631 aa22.77■■□□□ 1.24
SMG6-206ENST00000570668 MYO15BQ96JP2 1530 aa22.69■■□□□ 1.22
SMG6-206ENST00000570668 ZCCHC6Q5VYS8 1495 aaKnown RBP22.67■■□□□ 1.22
SMG6-206ENST00000570668 DCAF1Q9Y4B6 1507 aa22.56■■□□□ 1.2
SMG6-206ENST00000570668 UNC13AQ9UPW8 1703 aa22.32■■□□□ 1.16
SMG6-206ENST00000570668 PABPN1Q86U42 306 aaKnown RBP eCLIP22.24■■□□□ 1.15
SMG6-206ENST00000570668 BICRAQ9NZM4 1560 aa22.18■■□□□ 1.14
SMG6-206ENST00000570668 SCRIBQ14160 1630 aa22.09■■□□□ 1.13
SMG6-206ENST00000570668 SHROOM4Q9ULL8 1493 aa21.96■■□□□ 1.11
SMG6-206ENST00000570668 DNAJC5BQ9UF47 199 aa21.96■■□□□ 1.11
SMG6-206ENST00000570668 EIF4G1Q04637 1599 aaKnown RBP21.61■■□□□ 1.05
SMG6-206ENST00000570668 CC2D2AQ9P2K1 1620 aa21.53■■□□□ 1.04
SMG6-206ENST00000570668 CECR2Q9BXF3 1484 aa21.41■■□□□ 1.02
SMG6-206ENST00000570668 SMARCA4P51532 1647 aa21.15■□□□□ 0.98
SMG6-206ENST00000570668 BAZ1AQ9NRL2 1556 aaPredicted RBP21.12■□□□□ 0.97
SMG6-206ENST00000570668 NCAPD3P42695 1498 aa21.09■□□□□ 0.97
SMG6-206ENST00000570668 ATAD2BQ9ULI0 1458 aa21.07■□□□□ 0.96
SMG6-206ENST00000570668 SMARCA2P51531 1590 aa21.03■□□□□ 0.96
SMG6-206ENST00000570668 MROH2BQ7Z745 1585 aa20.98■□□□□ 0.95
SMG6-206ENST00000570668 PEG3Q9GZU2 1588 aa20.97■□□□□ 0.95
SMG6-206ENST00000570668 HMGXB3Q12766 1538 aa20.95■□□□□ 0.94
SMG6-206ENST00000570668 BAZ1BQ9UIG0 1483 aaKnown RBP20.88■□□□□ 0.93
SMG6-206ENST00000570668 WIZO95785 1651 aa20.73■□□□□ 0.91
SMG6-206ENST00000570668 RSF1Q96T23 1441 aaPredicted RBP20.73■□□□□ 0.91
SMG6-206ENST00000570668 NESP48681 1621 aa20.57■□□□□ 0.88
SMG6-206ENST00000570668 TOP2AP11388 1531 aaKnown RBP20.53■□□□□ 0.88
SMG6-206ENST00000570668 LAMC3Q9Y6N6 1575 aa20.52■□□□□ 0.88
SMG6-206ENST00000570668 ERCC6Q03468 1493 aa20.52■□□□□ 0.88
SMG6-206ENST00000570668 CADPSQ9ULU8 1353 aa20.46■□□□□ 0.87
SMG6-206ENST00000570668 PDS5BQ9NTI5 1447 aa20.4■□□□□ 0.86
SMG6-206ENST00000570668 CUX2O14529 1486 aa20.36■□□□□ 0.85
SMG6-206ENST00000570668 CFTRP13569 1480 aa20.32■□□□□ 0.84
SMG6-206ENST00000570668 KIF21AQ7Z4S6 1674 aa20.31■□□□□ 0.84
SMG6-206ENST00000570668 CCDC88BA6NC98 1476 aa20.3■□□□□ 0.84
SMG6-206ENST00000570668 THOC2Q8NI27 1593 aaKnown RBP20.28■□□□□ 0.84
SMG6-206ENST00000570668 FANCD2Q9BXW9 1451 aa20.21■□□□□ 0.83
SMG6-206ENST00000570668 MRC2Q9UBG0 1479 aa20.18■□□□□ 0.82
SMG6-206ENST00000570668 CEP164Q9UPV0 1460 aa20.18■□□□□ 0.82
SMG6-206ENST00000570668 WDR62O43379 1518 aa20.12■□□□□ 0.81
SMG6-206ENST00000570668 PRDM2Q13029 1718 aa20.11■□□□□ 0.81
SMG6-206ENST00000570668 SUPT5HO00267 1087 aaKnown RBP20.11■□□□□ 0.81
SMG6-206ENST00000570668 URB2Q14146 1524 aaKnown RBP20.02■□□□□ 0.79
SMG6-206ENST00000570668 ABCC8Q09428 1581 aa19.89■□□□□ 0.77
SMG6-206ENST00000570668 TOPBP1Q92547 1522 aa19.87■□□□□ 0.77
SMG6-206ENST00000570668 DNAJC5Q9H3Z4 198 aa19.86■□□□□ 0.77
SMG6-206ENST00000570668 DNMBPQ6XZF7 1577 aa19.84■□□□□ 0.77
SMG6-206ENST00000570668 IFT140Q96RY7 1462 aa19.78■□□□□ 0.76
SMG6-206ENST00000570668 POLA1P09884 1462 aaPredicted RBP19.71■□□□□ 0.75
SMG6-206ENST00000570668 CUX1P39880 1505 aa19.69■□□□□ 0.74
SMG6-206ENST00000570668 ZNF608Q9ULD9 1512 aaPredicted RBP19.69■□□□□ 0.74
SMG6-206ENST00000570668 TARBP1Q13395 1621 aaKnown RBP19.67■□□□□ 0.74
SMG6-206ENST00000570668 FGD5Q6ZNL6 1462 aa19.64■□□□□ 0.73
SMG6-206ENST00000570668 SOGA1O94964 1423 aa19.62■□□□□ 0.73
SMG6-206ENST00000570668 RAD54L2Q9Y4B4 1467 aa19.61■□□□□ 0.73
SMG6-206ENST00000570668 EIF4G3O43432 1585 aaKnown RBP19.59■□□□□ 0.73
SMG6-206ENST00000570668 AQRO60306 1485 aaKnown RBP eCLIP19.57■□□□□ 0.721e-6■■■■□ 23.5
SMG6-206ENST00000570668 WRNQ14191 1432 aaPredicted RBP eCLIP19.54■□□□□ 0.72
SMG6-206ENST00000570668 TDRD9Q8NDG6 1382 aaKnown RBP19.52■□□□□ 0.72
SMG6-206ENST00000570668 WDR97A6NE52 1622 aa19.51■□□□□ 0.71
SMG6-206ENST00000570668 OSCARQ8IYS5 282 aa19.51■□□□□ 0.71
SMG6-206ENST00000570668 TOP2BQ02880 1626 aa19.5■□□□□ 0.71
SMG6-206ENST00000570668 BIVM-ERCC5R4GMW8 1640 aa19.49■□□□□ 0.71
SMG6-206ENST00000570668 SYNJ1O43426 1573 aa19.48■□□□□ 0.71
SMG6-206ENST00000570668 ABCA10Q8WWZ4 1543 aa19.46■□□□□ 0.71
SMG6-206ENST00000570668 CHIC1Q5VXU3 224 aa19.41■□□□□ 0.7
SMG6-206ENST00000570668 GRIN2BQ13224 1484 aa19.41■□□□□ 0.7
SMG6-206ENST00000570668 GAPVD1Q14C86 1478 aa19.4■□□□□ 0.7
SMG6-206ENST00000570668 ABCA5Q8WWZ7 1642 aa19.37■□□□□ 0.69
SMG6-206ENST00000570668 SNAPC4Q5SXM2 1469 aa19.37■□□□□ 0.69
SMG6-206ENST00000570668 MAGI1Q96QZ7 1491 aaPredicted RBP19.36■□□□□ 0.69
SMG6-206ENST00000570668 CHD1O14646 1710 aa19.35■□□□□ 0.69
SMG6-206ENST00000570668 FBLN2P98095 1184 aa19.34■□□□□ 0.69
SMG6-206ENST00000570668 AEBP2Q6ZN18 517 aaPredicted RBP19.32■□□□□ 0.68
SMG6-206ENST00000570668 PBRM1Q86U86 1689 aa19.32■□□□□ 0.68
SMG6-206ENST00000570668 SYNJ2O15056 1496 aa19.29■□□□□ 0.68
SMG6-206ENST00000570668 CHMP7Q8WUX9 453 aaPredicted RBP19.29■□□□□ 0.68
SMG6-206ENST00000570668 ERICH3Q5RHP9 1530 aa19.22■□□□□ 0.67
SMG6-206ENST00000570668 ADAMTS12P58397 1594 aa19.19■□□□□ 0.66
SMG6-206ENST00000570668 FHAD1B1AJZ9 1412 aa19.17■□□□□ 0.66
SMG6-206ENST00000570668 ARHGEF11O15085 1522 aa19.17■□□□□ 0.66
SMG6-206ENST00000570668 CLASP1Q7Z460 1538 aa19.17■□□□□ 0.66
SMG6-206ENST00000570668 RIMBP3CA6NJZ7 1639 aa19.17■□□□□ 0.66
SMG6-206ENST00000570668 RIMBP3BA6NNM3 1639 aa19.17■□□□□ 0.66
SMG6-206ENST00000570668 RIMBP3Q9UFD9 1639 aa19.17■□□□□ 0.66
SMG6-206ENST00000570668 GRIN2AQ12879 1464 aa19.16■□□□□ 0.66
SMG6-206ENST00000570668 KIF27Q86VH2 1401 aa19.14■□□□□ 0.65
SMG6-206ENST00000570668 TRIM41Q8WV44 630 aa19.12■□□□□ 0.65
SMG6-206ENST00000570668 IGF1RP08069 1367 aa19.09■□□□□ 0.65
SMG6-206ENST00000570668 NUP160Q12769 1436 aa19.08■□□□□ 0.65
SMG6-206ENST00000570668 CEP170Q5SW79 1584 aa19.05■□□□□ 0.64
SMG6-206ENST00000570668 ARAP1Q96P48 1450 aa19.02■□□□□ 0.63
SMG6-206ENST00000570668 CYB5RLQ6IPT4 315 aa19.01■□□□□ 0.63
SMG6-206ENST00000570668 CUL7Q14999 1698 aa19.01■□□□□ 0.63
SMG6-206ENST00000570668 CARMIL1Q5VZK9 1371 aa18.96■□□□□ 0.63
SMG6-206ENST00000570668 SHROOM2Q13796 1616 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms