RNA–Protein interactions for RNA: ENST00000568509.2

SPG7-219, Transcript of SPG7, paraplegin matrix AAA peptidase subunit, humanhuman

TSL 2

Gene SPG7, Length 1,369 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG7-219ENST00000568509 NISCHQ9Y2I1 1504 aa37.1■■■■□ 3.53
SPG7-219ENST00000568509 ABCC9O60706 1549 aa33.23■■■□□ 2.91
SPG7-219ENST00000568509 CCDC180Q9P1Z9 1646 aa33.18■■■□□ 2.9
SPG7-219ENST00000568509 CHIC1Q5VXU3 224 aa31.98■■■□□ 2.71
SPG7-219ENST00000568509 AEBP2Q6ZN18 517 aaPredicted RBP31.89■■■□□ 2.7
SPG7-219ENST00000568509 RB1CC1Q8TDY2 1594 aa31.62■■■□□ 2.65
SPG7-219ENST00000568509 DCAF8L2P0C7V8 631 aa31.54■■■□□ 2.64
SPG7-219ENST00000568509 NACADO15069 1562 aa31.41■■■□□ 2.62
SPG7-219ENST00000568509 DNAJC5BQ9UF47 199 aa31.17■■■□□ 2.58
SPG7-219ENST00000568509 PABPN1Q86U42 306 aaKnown RBP eCLIP31.05■■■□□ 2.56
SPG7-219ENST00000568509 MYO15BQ96JP2 1530 aa30.97■■■□□ 2.55
SPG7-219ENST00000568509 UNC13AQ9UPW8 1703 aa30.85■■■□□ 2.53
SPG7-219ENST00000568509 ZCCHC6Q5VYS8 1495 aaKnown RBP30.71■■■□□ 2.51
SPG7-219ENST00000568509 BICRAQ9NZM4 1560 aa30.65■■■□□ 2.5
SPG7-219ENST00000568509 DCAF1Q9Y4B6 1507 aa30.61■■■□□ 2.49
SPG7-219ENST00000568509 SCRIBQ14160 1630 aa30.3■■■□□ 2.44
SPG7-219ENST00000568509 SHROOM4Q9ULL8 1493 aa30.22■■■□□ 2.43
SPG7-219ENST00000568509 CC2D2AQ9P2K1 1620 aa29.98■■■□□ 2.39
SPG7-219ENST00000568509 CECR2Q9BXF3 1484 aa29.91■■■□□ 2.38
SPG7-219ENST00000568509 EIF4G1Q04637 1599 aaKnown RBP29.91■■■□□ 2.38
SPG7-219ENST00000568509 NCAPD3P42695 1498 aa29.03■■■□□ 2.24
SPG7-219ENST00000568509 ATAD2BQ9ULI0 1458 aa28.94■■■□□ 2.22
SPG7-219ENST00000568509 SMARCA4P51532 1647 aa28.89■■■□□ 2.22
SPG7-219ENST00000568509 SMARCA2P51531 1590 aa28.86■■■□□ 2.21
SPG7-219ENST00000568509 BAZ1AQ9NRL2 1556 aaPredicted RBP28.78■■■□□ 2.2
SPG7-219ENST00000568509 HMGXB3Q12766 1538 aa28.75■■■□□ 2.19
SPG7-219ENST00000568509 ERCC6Q03468 1493 aa28.7■■■□□ 2.19
SPG7-219ENST00000568509 BAZ1BQ9UIG0 1483 aaKnown RBP28.67■■■□□ 2.18
SPG7-219ENST00000568509 MROH2BQ7Z745 1585 aa28.59■■■□□ 2.17
SPG7-219ENST00000568509 DNAJC5Q9H3Z4 198 aa28.59■■■□□ 2.17
SPG7-219ENST00000568509 PEG3Q9GZU2 1588 aa28.58■■■□□ 2.17
SPG7-219ENST00000568509 CUX2O14529 1486 aa28.57■■■□□ 2.16
SPG7-219ENST00000568509 NESP48681 1621 aa28.55■■■□□ 2.16
SPG7-219ENST00000568509 LAMC3Q9Y6N6 1575 aa28.33■■■□□ 2.13
SPG7-219ENST00000568509 WIZO95785 1651 aa28.25■■■□□ 2.11
SPG7-219ENST00000568509 PDS5BQ9NTI5 1447 aa28.23■■■□□ 2.11
SPG7-219ENST00000568509 CADPSQ9ULU8 1353 aa28.19■■■□□ 2.1
SPG7-219ENST00000568509 PHF23Q9BUL5 403 aaPredicted RBP28.16■■■□□ 2.1
SPG7-219ENST00000568509 THOC2Q8NI27 1593 aaKnown RBP28.15■■■□□ 2.1
SPG7-219ENST00000568509 KIF21AQ7Z4S6 1674 aa28.13■■■□□ 2.09
SPG7-219ENST00000568509 RSF1Q96T23 1441 aaPredicted RBP28.05■■■□□ 2.08
SPG7-219ENST00000568509 MRC2Q9UBG0 1479 aa27.93■■■□□ 2.06
SPG7-219ENST00000568509 TOP2AP11388 1531 aaKnown RBP27.86■■■□□ 2.05
SPG7-219ENST00000568509 CFTRP13569 1480 aa27.84■■■□□ 2.05
SPG7-219ENST00000568509 FANCD2Q9BXW9 1451 aa27.84■■■□□ 2.05
SPG7-219ENST00000568509 CEP164Q9UPV0 1460 aa27.84■■■□□ 2.05
SPG7-219ENST00000568509 WDR62O43379 1518 aa27.82■■■□□ 2.04
SPG7-219ENST00000568509 CCDC88BA6NC98 1476 aa27.62■■■□□ 2.01
SPG7-219ENST00000568509 URB2Q14146 1524 aaKnown RBP27.58■■■□□ 2.01
SPG7-219ENST00000568509 PRDM2Q13029 1718 aa27.48■■□□□ 1.99
SPG7-219ENST00000568509 OSCARQ8IYS5 282 aa27.44■■□□□ 1.98
SPG7-219ENST00000568509 TRIM41Q8WV44 630 aa27.4■■□□□ 1.98
SPG7-219ENST00000568509 TOPBP1Q92547 1522 aa27.3■■□□□ 1.96
SPG7-219ENST00000568509 IFT140Q96RY7 1462 aa27.29■■□□□ 1.96
SPG7-219ENST00000568509 ABCC8Q09428 1581 aa27.29■■□□□ 1.96
SPG7-219ENST00000568509 ZNF608Q9ULD9 1512 aaPredicted RBP27.24■■□□□ 1.95
SPG7-219ENST00000568509 DNMBPQ6XZF7 1577 aa27.18■■□□□ 1.94
SPG7-219ENST00000568509 SENP3Q9H4L4 574 aaPredicted RBP27.18■■□□□ 1.94
SPG7-219ENST00000568509 AQRO60306 1485 aaKnown RBP eCLIP27.05■■□□□ 1.92
SPG7-219ENST00000568509 EIF4G3O43432 1585 aaKnown RBP27.03■■□□□ 1.92
SPG7-219ENST00000568509 SUPT5HO00267 1087 aaKnown RBP27.03■■□□□ 1.92
SPG7-219ENST00000568509 POLA1P09884 1462 aaPredicted RBP27.02■■□□□ 1.92
SPG7-219ENST00000568509 TARBP1Q13395 1621 aaKnown RBP27.01■■□□□ 1.92
SPG7-219ENST00000568509 SOGA1O94964 1423 aa26.99■■□□□ 1.91
SPG7-219ENST00000568509 FBLN2P98095 1184 aa26.97■■□□□ 1.91
SPG7-219ENST00000568509 RAD54L2Q9Y4B4 1467 aa26.96■■□□□ 1.91
SPG7-219ENST00000568509 TDRD9Q8NDG6 1382 aaKnown RBP26.93■■□□□ 1.9
SPG7-219ENST00000568509 RIMBP3CA6NJZ7 1639 aa26.9■■□□□ 1.9
SPG7-219ENST00000568509 RIMBP3BA6NNM3 1639 aa26.9■■□□□ 1.9
SPG7-219ENST00000568509 RIMBP3Q9UFD9 1639 aa26.9■■□□□ 1.9
SPG7-219ENST00000568509 FGD5Q6ZNL6 1462 aa26.87■■□□□ 1.89
SPG7-219ENST00000568509 CUX1P39880 1505 aa26.84■■□□□ 1.89
SPG7-219ENST00000568509 CHD1O14646 1710 aa26.83■■□□□ 1.89
SPG7-219ENST00000568509 ARHGEF11O15085 1522 aa26.83■■□□□ 1.89
SPG7-219ENST00000568509 CYB5RLQ6IPT4 315 aa26.8■■□□□ 1.88
SPG7-219ENST00000568509 CHMP7Q8WUX9 453 aaPredicted RBP26.77■■□□□ 1.88
SPG7-219ENST00000568509 SNAPC4Q5SXM2 1469 aa26.72■■□□□ 1.87
SPG7-219ENST00000568509 WDR97A6NE52 1622 aa26.72■■□□□ 1.87
SPG7-219ENST00000568509 GRIN2BQ13224 1484 aa26.68■■□□□ 1.86
SPG7-219ENST00000568509 MAGI1Q96QZ7 1491 aaPredicted RBP26.65■■□□□ 1.86
SPG7-219ENST00000568509 GAPVD1Q14C86 1478 aa26.62■■□□□ 1.85
SPG7-219ENST00000568509 SYNJ2O15056 1496 aa26.58■■□□□ 1.85
SPG7-219ENST00000568509 ABCA10Q8WWZ4 1543 aa26.57■■□□□ 1.84
SPG7-219ENST00000568509 ARAP1Q96P48 1450 aa26.56■■□□□ 1.84
SPG7-219ENST00000568509 SYNJ1O43426 1573 aa26.55■■□□□ 1.84
SPG7-219ENST00000568509 WRNQ14191 1432 aaPredicted RBP eCLIP26.53■■□□□ 1.84
SPG7-219ENST00000568509 PBRM1Q86U86 1689 aa26.52■■□□□ 1.84
SPG7-219ENST00000568509 CLASP1Q7Z460 1538 aa26.51■■□□□ 1.83
SPG7-219ENST00000568509 TRHP20396 242 aaPredicted RBP26.5■■□□□ 1.83
SPG7-219ENST00000568509 ABCA5Q8WWZ7 1642 aa26.46■■□□□ 1.83
SPG7-219ENST00000568509 TOP2BQ02880 1626 aa26.42■■□□□ 1.82
SPG7-219ENST00000568509 BIVM-ERCC5R4GMW8 1640 aa26.4■■□□□ 1.82
SPG7-219ENST00000568509 PLPPR3Q6T4P5 718 aa26.38■■□□□ 1.81
SPG7-219ENST00000568509 GRIN2AQ12879 1464 aa26.31■■□□□ 1.8
SPG7-219ENST00000568509 FHAD1B1AJZ9 1412 aa26.28■■□□□ 1.8
SPG7-219ENST00000568509 ADAMTS12P58397 1594 aa26.25■■□□□ 1.79
SPG7-219ENST00000568509 ERICH3Q5RHP9 1530 aa26.23■■□□□ 1.79
SPG7-219ENST00000568509 NUP160Q12769 1436 aa26.22■■□□□ 1.79
SPG7-219ENST00000568509 CEP170Q5SW79 1584 aa26.2■■□□□ 1.78
SPG7-219ENST00000568509 ERCC6L2Q5T890 1561 aa26.14■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms