RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 NISCHQ9Y2I1 1504 aa30.33■■■□□ 2.45
CLK3-222ENST00000568232 AEBP2Q6ZN18 517 aaPredicted RBP28.75■■■□□ 2.19
CLK3-222ENST00000568232 ABCC9O60706 1549 aa28.19■■■□□ 2.1
CLK3-222ENST00000568232 CCDC180Q9P1Z9 1646 aa27.39■■□□□ 1.98
CLK3-222ENST00000568232 CHIC1Q5VXU3 224 aa27.29■■□□□ 1.96
CLK3-222ENST00000568232 DNAJC5BQ9UF47 199 aa27.11■■□□□ 1.93
CLK3-222ENST00000568232 RB1CC1Q8TDY2 1594 aa26.44■■□□□ 1.82
CLK3-222ENST00000568232 PABPN1Q86U42 306 aaKnown RBP eCLIP26.21■■□□□ 1.794e-9■□□□□ 8.7
CLK3-222ENST00000568232 NACADO15069 1562 aa26.09■■□□□ 1.77
CLK3-222ENST00000568232 DCAF8L2P0C7V8 631 aa26.03■■□□□ 1.76
CLK3-222ENST00000568232 UNC13AQ9UPW8 1703 aa25.83■■□□□ 1.73
CLK3-222ENST00000568232 BICRAQ9NZM4 1560 aa25.75■■□□□ 1.71
CLK3-222ENST00000568232 MYO15BQ96JP2 1530 aa25.48■■□□□ 1.67
CLK3-222ENST00000568232 CECR2Q9BXF3 1484 aa25.42■■□□□ 1.66
CLK3-222ENST00000568232 CC2D2AQ9P2K1 1620 aa25.37■■□□□ 1.65
CLK3-222ENST00000568232 DNAJC5Q9H3Z4 198 aa25.27■■□□□ 1.64
CLK3-222ENST00000568232 SHROOM4Q9ULL8 1493 aa25.21■■□□□ 1.63
CLK3-222ENST00000568232 EIF4G1Q04637 1599 aaKnown RBP25.15■■□□□ 1.62
CLK3-222ENST00000568232 SCRIBQ14160 1630 aa25.04■■□□□ 1.6
CLK3-222ENST00000568232 ZCCHC6Q5VYS8 1495 aaKnown RBP24.99■■□□□ 1.59
CLK3-222ENST00000568232 DCAF1Q9Y4B6 1507 aa24.95■■□□□ 1.58
CLK3-222ENST00000568232 CUX2O14529 1486 aa24.46■■□□□ 1.51
CLK3-222ENST00000568232 ERCC6Q03468 1493 aa24.34■■□□□ 1.49
CLK3-222ENST00000568232 SENP3Q9H4L4 574 aaPredicted RBP24.3■■□□□ 1.48
CLK3-222ENST00000568232 NCAPD3P42695 1498 aa24.15■■□□□ 1.46
CLK3-222ENST00000568232 PHF23Q9BUL5 403 aaPredicted RBP24.08■■□□□ 1.45
CLK3-222ENST00000568232 NESP48681 1621 aa24.05■■□□□ 1.44
CLK3-222ENST00000568232 ATAD2BQ9ULI0 1458 aa24■■□□□ 1.43
CLK3-222ENST00000568232 TRIM41Q8WV44 630 aa23.97■■□□□ 1.43
CLK3-222ENST00000568232 HMGXB3Q12766 1538 aa23.85■■□□□ 1.41
CLK3-222ENST00000568232 THOC2Q8NI27 1593 aaKnown RBP23.84■■□□□ 1.41
CLK3-222ENST00000568232 SMARCA2P51531 1590 aa23.83■■□□□ 1.41
CLK3-222ENST00000568232 SMARCA4P51532 1647 aa23.78■■□□□ 1.4
CLK3-222ENST00000568232 BAZ1BQ9UIG0 1483 aaKnown RBP23.72■■□□□ 1.39
CLK3-222ENST00000568232 LAMC3Q9Y6N6 1575 aa23.65■■□□□ 1.38
CLK3-222ENST00000568232 KIF21AQ7Z4S6 1674 aa23.63■■□□□ 1.37
CLK3-222ENST00000568232 PDS5BQ9NTI5 1447 aa23.59■■□□□ 1.37
CLK3-222ENST00000568232 BAZ1AQ9NRL2 1556 aaPredicted RBP23.55■■□□□ 1.36
CLK3-222ENST00000568232 PEG3Q9GZU2 1588 aa23.52■■□□□ 1.36
CLK3-222ENST00000568232 MRC2Q9UBG0 1479 aa23.42■■□□□ 1.34
CLK3-222ENST00000568232 MROH2BQ7Z745 1585 aa23.41■■□□□ 1.34
CLK3-222ENST00000568232 CADPSQ9ULU8 1353 aa23.4■■□□□ 1.34
CLK3-222ENST00000568232 WDR62O43379 1518 aa23.37■■□□□ 1.33
CLK3-222ENST00000568232 OSCARQ8IYS5 282 aa23.32■■□□□ 1.32
CLK3-222ENST00000568232 CEP164Q9UPV0 1460 aa23.2■■□□□ 1.3
CLK3-222ENST00000568232 FANCD2Q9BXW9 1451 aa23.14■■□□□ 1.29
CLK3-222ENST00000568232 WIZO95785 1651 aa23.08■■□□□ 1.29
CLK3-222ENST00000568232 RIMBP3CA6NJZ7 1639 aa23.04■■□□□ 1.28
CLK3-222ENST00000568232 RIMBP3BA6NNM3 1639 aa23.04■■□□□ 1.28
CLK3-222ENST00000568232 RIMBP3Q9UFD9 1639 aa23.04■■□□□ 1.28
CLK3-222ENST00000568232 URB2Q14146 1524 aaKnown RBP23.01■■□□□ 1.27
CLK3-222ENST00000568232 CFTRP13569 1480 aa22.98■■□□□ 1.27
CLK3-222ENST00000568232 ARHGEF11O15085 1522 aa22.92■■□□□ 1.26
CLK3-222ENST00000568232 CYB5RLQ6IPT4 315 aa22.87■■□□□ 1.25
CLK3-222ENST00000568232 ZNF608Q9ULD9 1512 aaPredicted RBP22.86■■□□□ 1.25
CLK3-222ENST00000568232 TRHP20396 242 aaPredicted RBP22.82■■□□□ 1.24
CLK3-222ENST00000568232 FOXD1Q16676 465 aa22.76■■□□□ 1.23
CLK3-222ENST00000568232 IFT140Q96RY7 1462 aa22.75■■□□□ 1.23
CLK3-222ENST00000568232 TOP2AP11388 1531 aaKnown RBP22.7■■□□□ 1.22
CLK3-222ENST00000568232 RSF1Q96T23 1441 aaPredicted RBP22.69■■□□□ 1.22
CLK3-222ENST00000568232 ARAP1Q96P48 1450 aa22.66■■□□□ 1.22
CLK3-222ENST00000568232 TOPBP1Q92547 1522 aa22.62■■□□□ 1.21
CLK3-222ENST00000568232 EIF4G3O43432 1585 aaKnown RBP22.62■■□□□ 1.21
CLK3-222ENST00000568232 FBLN2P98095 1184 aa22.59■■□□□ 1.21
CLK3-222ENST00000568232 AQRO60306 1485 aaKnown RBP eCLIP22.59■■□□□ 1.21
CLK3-222ENST00000568232 PRDM2Q13029 1718 aa22.57■■□□□ 1.2
CLK3-222ENST00000568232 CHD1O14646 1710 aa22.56■■□□□ 1.2
CLK3-222ENST00000568232 CCDC88BA6NC98 1476 aa22.52■■□□□ 1.2
CLK3-222ENST00000568232 ABCC8Q09428 1581 aa22.46■■□□□ 1.19
CLK3-222ENST00000568232 TARBP1Q13395 1621 aaKnown RBP22.46■■□□□ 1.19
CLK3-222ENST00000568232 DNMBPQ6XZF7 1577 aa22.45■■□□□ 1.18
CLK3-222ENST00000568232 POLA1P09884 1462 aaPredicted RBP22.35■■□□□ 1.17
CLK3-222ENST00000568232 TDRD9Q8NDG6 1382 aaKnown RBP22.35■■□□□ 1.17
CLK3-222ENST00000568232 RAD54L2Q9Y4B4 1467 aa22.34■■□□□ 1.17
CLK3-222ENST00000568232 CLASP1Q7Z460 1538 aa22.31■■□□□ 1.16
CLK3-222ENST00000568232 SNAPC4Q5SXM2 1469 aa22.28■■□□□ 1.16
CLK3-222ENST00000568232 SOGA1O94964 1423 aa22.27■■□□□ 1.16
CLK3-222ENST00000568232 CHMP7Q8WUX9 453 aaPredicted RBP22.27■■□□□ 1.16
CLK3-222ENST00000568232 SYNJ1O43426 1573 aa22.2■■□□□ 1.14
CLK3-222ENST00000568232 GAPVD1Q14C86 1478 aa22.15■■□□□ 1.14
CLK3-222ENST00000568232 MAGI1Q96QZ7 1491 aaPredicted RBP22.14■■□□□ 1.13
CLK3-222ENST00000568232 FGD5Q6ZNL6 1462 aa22.13■■□□□ 1.13
CLK3-222ENST00000568232 SYNJ2O15056 1496 aa22.1■■□□□ 1.13
CLK3-222ENST00000568232 GRIN2BQ13224 1484 aa22.1■■□□□ 1.13
CLK3-222ENST00000568232 WDR97A6NE52 1622 aa22.07■■□□□ 1.12
CLK3-222ENST00000568232 CUX1P39880 1505 aa22.02■■□□□ 1.12
CLK3-222ENST00000568232 ERCC6L2Q5T890 1561 aa21.99■■□□□ 1.11
CLK3-222ENST00000568232 PBRM1Q86U86 1689 aa21.93■■□□□ 1.1
CLK3-222ENST00000568232 CEP170Q5SW79 1584 aa21.83■■□□□ 1.09
CLK3-222ENST00000568232 GRIN2AQ12879 1464 aa21.83■■□□□ 1.08
CLK3-222ENST00000568232 ABCA5Q8WWZ7 1642 aa21.82■■□□□ 1.08
CLK3-222ENST00000568232 ABCA10Q8WWZ4 1543 aa21.81■■□□□ 1.08
CLK3-222ENST00000568232 NUP160Q12769 1436 aa21.78■■□□□ 1.08
CLK3-222ENST00000568232 KIF13AQ9H1H9 1805 aa21.78■■□□□ 1.08
CLK3-222ENST00000568232 PLPPR3Q6T4P5 718 aa21.75■■□□□ 1.07
CLK3-222ENST00000568232 ILDR1Q86SU0 546 aaPredicted RBP21.72■■□□□ 1.07
CLK3-222ENST00000568232 ADAMTS12P58397 1594 aa21.71■■□□□ 1.07
CLK3-222ENST00000568232 SHROOM2Q13796 1616 aa21.71■■□□□ 1.07
CLK3-222ENST00000568232 KDM4FA0A1W2PPD8 638 aa21.71■■□□□ 1.07
CLK3-222ENST00000568232 FAM69CQ0P6D2 419 aa21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms