RNA–Protein interactions for RNA: ENST00000568108.1

PTPN9-205, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

TSL 2

Gene PTPN9, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-205ENST00000568108 NISCHQ9Y2I1 1504 aa15.89■□□□□ 0.13
PTPN9-205ENST00000568108 ABCC9O60706 1549 aa14.43□□□□□ -0.1
PTPN9-205ENST00000568108 CCDC180Q9P1Z9 1646 aa14.24□□□□□ -0.13
PTPN9-205ENST00000568108 CHIC1Q5VXU3 224 aa14.21□□□□□ -0.13
PTPN9-205ENST00000568108 AEBP2Q6ZN18 517 aaPredicted RBP14□□□□□ -0.17
PTPN9-205ENST00000568108 DNAJC5BQ9UF47 199 aa13.69□□□□□ -0.22
PTPN9-205ENST00000568108 RB1CC1Q8TDY2 1594 aa13.66□□□□□ -0.22
PTPN9-205ENST00000568108 DCAF8L2P0C7V8 631 aa13.57□□□□□ -0.24
PTPN9-205ENST00000568108 NACADO15069 1562 aa13.54□□□□□ -0.24
PTPN9-205ENST00000568108 PABPN1Q86U42 306 aaKnown RBP eCLIP13.47□□□□□ -0.25
PTPN9-205ENST00000568108 MYO15BQ96JP2 1530 aa13.3□□□□□ -0.28
PTPN9-205ENST00000568108 UNC13AQ9UPW8 1703 aa13.29□□□□□ -0.28
PTPN9-205ENST00000568108 BICRAQ9NZM4 1560 aa13.25□□□□□ -0.29
PTPN9-205ENST00000568108 ZCCHC6Q5VYS8 1495 aaKnown RBP13.12□□□□□ -0.31
PTPN9-205ENST00000568108 DCAF1Q9Y4B6 1507 aa13.08□□□□□ -0.31
PTPN9-205ENST00000568108 SHROOM4Q9ULL8 1493 aa13.04□□□□□ -0.32
PTPN9-205ENST00000568108 CECR2Q9BXF3 1484 aa13.02□□□□□ -0.33
PTPN9-205ENST00000568108 SCRIBQ14160 1630 aa13.01□□□□□ -0.33
PTPN9-205ENST00000568108 CC2D2AQ9P2K1 1620 aa13□□□□□ -0.33
PTPN9-205ENST00000568108 EIF4G1Q04637 1599 aaKnown RBP12.94□□□□□ -0.34
PTPN9-205ENST00000568108 DNAJC5Q9H3Z4 198 aa12.66□□□□□ -0.38
PTPN9-205ENST00000568108 NCAPD3P42695 1498 aa12.53□□□□□ -0.4
PTPN9-205ENST00000568108 PHF23Q9BUL5 403 aaPredicted RBP12.52□□□□□ -0.41
PTPN9-205ENST00000568108 ERCC6Q03468 1493 aa12.47□□□□□ -0.41
PTPN9-205ENST00000568108 CUX2O14529 1486 aa12.46□□□□□ -0.41
PTPN9-205ENST00000568108 ATAD2BQ9ULI0 1458 aa12.46□□□□□ -0.41
PTPN9-205ENST00000568108 SMARCA2P51531 1590 aa12.41□□□□□ -0.42
PTPN9-205ENST00000568108 SMARCA4P51532 1647 aa12.39□□□□□ -0.43
PTPN9-205ENST00000568108 HMGXB3Q12766 1538 aa12.37□□□□□ -0.43
PTPN9-205ENST00000568108 NESP48681 1621 aa12.36□□□□□ -0.43
PTPN9-205ENST00000568108 BAZ1AQ9NRL2 1556 aaPredicted RBP12.33□□□□□ -0.44
PTPN9-205ENST00000568108 BAZ1BQ9UIG0 1483 aaKnown RBP12.33□□□□□ -0.44
PTPN9-205ENST00000568108 PEG3Q9GZU2 1588 aa12.26□□□□□ -0.45
PTPN9-205ENST00000568108 MROH2BQ7Z745 1585 aa12.24□□□□□ -0.45
PTPN9-205ENST00000568108 LAMC3Q9Y6N6 1575 aa12.22□□□□□ -0.45
PTPN9-205ENST00000568108 PDS5BQ9NTI5 1447 aa12.2□□□□□ -0.46
PTPN9-205ENST00000568108 THOC2Q8NI27 1593 aaKnown RBP12.2□□□□□ -0.46
PTPN9-205ENST00000568108 CADPSQ9ULU8 1353 aa12.16□□□□□ -0.46
PTPN9-205ENST00000568108 KIF21AQ7Z4S6 1674 aa12.14□□□□□ -0.47
PTPN9-205ENST00000568108 MRC2Q9UBG0 1479 aa12.08□□□□□ -0.48
PTPN9-205ENST00000568108 WIZO95785 1651 aa12.07□□□□□ -0.48
PTPN9-205ENST00000568108 TRIM41Q8WV44 630 aa12.07□□□□□ -0.48
PTPN9-205ENST00000568108 WDR62O43379 1518 aa12.03□□□□□ -0.48
PTPN9-205ENST00000568108 CEP164Q9UPV0 1460 aa12.01□□□□□ -0.49
PTPN9-205ENST00000568108 FANCD2Q9BXW9 1451 aa12□□□□□ -0.49
PTPN9-205ENST00000568108 CFTRP13569 1480 aa11.96□□□□□ -0.49
PTPN9-205ENST00000568108 RSF1Q96T23 1441 aaPredicted RBP11.96□□□□□ -0.49
PTPN9-205ENST00000568108 OSCARQ8IYS5 282 aa11.95□□□□□ -0.5
PTPN9-205ENST00000568108 TOP2AP11388 1531 aaKnown RBP11.91□□□□□ -0.5
PTPN9-205ENST00000568108 URB2Q14146 1524 aaKnown RBP11.9□□□□□ -0.5
PTPN9-205ENST00000568108 SENP3Q9H4L4 574 aaPredicted RBP11.85□□□□□ -0.51
PTPN9-205ENST00000568108 CCDC88BA6NC98 1476 aa11.82□□□□□ -0.52
PTPN9-205ENST00000568108 IFT140Q96RY7 1462 aa11.78□□□□□ -0.52
PTPN9-205ENST00000568108 ZNF608Q9ULD9 1512 aaPredicted RBP11.78□□□□□ -0.52
PTPN9-205ENST00000568108 PLPPR3Q6T4P5 718 aa11.78□□□□□ -0.52
PTPN9-205ENST00000568108 TOPBP1Q92547 1522 aa11.76□□□□□ -0.53
PTPN9-205ENST00000568108 PRDM2Q13029 1718 aa11.75□□□□□ -0.53
PTPN9-205ENST00000568108 ABCC8Q09428 1581 aa11.73□□□□□ -0.53
PTPN9-205ENST00000568108 RIMBP3CA6NJZ7 1639 aa11.72□□□□□ -0.53
PTPN9-205ENST00000568108 RIMBP3BA6NNM3 1639 aa11.72□□□□□ -0.53
PTPN9-205ENST00000568108 RIMBP3Q9UFD9 1639 aa11.72□□□□□ -0.53
PTPN9-205ENST00000568108 CYB5RLQ6IPT4 315 aa11.69□□□□□ -0.54
PTPN9-205ENST00000568108 ARHGEF11O15085 1522 aa11.69□□□□□ -0.54
PTPN9-205ENST00000568108 FBLN2P98095 1184 aa11.68□□□□□ -0.54
PTPN9-205ENST00000568108 AQRO60306 1485 aaKnown RBP eCLIP11.68□□□□□ -0.54
PTPN9-205ENST00000568108 DNMBPQ6XZF7 1577 aa11.67□□□□□ -0.54
PTPN9-205ENST00000568108 EIF4G3O43432 1585 aaKnown RBP11.66□□□□□ -0.54
PTPN9-205ENST00000568108 POLA1P09884 1462 aaPredicted RBP11.63□□□□□ -0.55
PTPN9-205ENST00000568108 TARBP1Q13395 1621 aaKnown RBP11.62□□□□□ -0.55
PTPN9-205ENST00000568108 SOGA1O94964 1423 aa11.61□□□□□ -0.55
PTPN9-205ENST00000568108 TDRD9Q8NDG6 1382 aaKnown RBP11.61□□□□□ -0.55
PTPN9-205ENST00000568108 RAD54L2Q9Y4B4 1467 aa11.6□□□□□ -0.55
PTPN9-205ENST00000568108 TRHP20396 242 aaPredicted RBP11.6□□□□□ -0.55
PTPN9-205ENST00000568108 CHD1O14646 1710 aa11.59□□□□□ -0.55
PTPN9-205ENST00000568108 ARAP1Q96P48 1450 aa11.57□□□□□ -0.56
PTPN9-205ENST00000568108 CHMP7Q8WUX9 453 aaPredicted RBP11.56□□□□□ -0.56
PTPN9-205ENST00000568108 FGD5Q6ZNL6 1462 aa11.53□□□□□ -0.56
PTPN9-205ENST00000568108 SNAPC4Q5SXM2 1469 aa11.52□□□□□ -0.56
PTPN9-205ENST00000568108 GRIN2BQ13224 1484 aa11.5□□□□□ -0.57
PTPN9-205ENST00000568108 CUX1P39880 1505 aa11.5□□□□□ -0.57
PTPN9-205ENST00000568108 MAGI1Q96QZ7 1491 aaPredicted RBP11.49□□□□□ -0.57
PTPN9-205ENST00000568108 WDR97A6NE52 1622 aa11.48□□□□□ -0.57
PTPN9-205ENST00000568108 SYNJ1O43426 1573 aa11.47□□□□□ -0.57
PTPN9-205ENST00000568108 CLASP1Q7Z460 1538 aa11.47□□□□□ -0.57
PTPN9-205ENST00000568108 SYNJ2O15056 1496 aa11.45□□□□□ -0.58
PTPN9-205ENST00000568108 GAPVD1Q14C86 1478 aa11.44□□□□□ -0.58
PTPN9-205ENST00000568108 SUPT5HO00267 1087 aaKnown RBP11.43□□□□□ -0.58
PTPN9-205ENST00000568108 ABCA10Q8WWZ4 1543 aa11.4□□□□□ -0.59
PTPN9-205ENST00000568108 PBRM1Q86U86 1689 aa11.37□□□□□ -0.59
PTPN9-205ENST00000568108 WRNQ14191 1432 aaPredicted RBP eCLIP11.35□□□□□ -0.59
PTPN9-205ENST00000568108 ABCA5Q8WWZ7 1642 aa11.35□□□□□ -0.59
PTPN9-205ENST00000568108 GRIN2AQ12879 1464 aa11.33□□□□□ -0.6
PTPN9-205ENST00000568108 ERCC6L2Q5T890 1561 aa11.3□□□□□ -0.6
PTPN9-205ENST00000568108 NUP160Q12769 1436 aa11.3□□□□□ -0.6
PTPN9-205ENST00000568108 FHAD1B1AJZ9 1412 aa11.29□□□□□ -0.6
PTPN9-205ENST00000568108 ADAMTS12P58397 1594 aa11.28□□□□□ -0.6
PTPN9-205ENST00000568108 CEP170Q5SW79 1584 aa11.28□□□□□ -0.6
PTPN9-205ENST00000568108 TOP2BQ02880 1626 aa11.27□□□□□ -0.61
PTPN9-205ENST00000568108 JPH4Q96JJ6 628 aa11.26□□□□□ -0.61
PTPN9-205ENST00000568108 BIVM-ERCC5R4GMW8 1640 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms