RNA–Protein interactions for RNA: ENST00000567890.1

NR4A1-222, Transcript of nuclear receptor subfamily 4 group A member 1, humanhuman

TSL 5

Gene NR4A1, Length 612 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR4A1-222ENST00000567890 NISCHQ9Y2I1 1504 aa30.03■■■□□ 2.4
NR4A1-222ENST00000567890 CCDC180Q9P1Z9 1646 aa26.84■■□□□ 1.89
NR4A1-222ENST00000567890 ABCC9O60706 1549 aa26.7■■□□□ 1.87
NR4A1-222ENST00000567890 RB1CC1Q8TDY2 1594 aa25.5■■□□□ 1.67
NR4A1-222ENST00000567890 NACADO15069 1562 aa25.36■■□□□ 1.65
NR4A1-222ENST00000567890 DCAF8L2P0C7V8 631 aa25.35■■□□□ 1.65
NR4A1-222ENST00000567890 MYO15BQ96JP2 1530 aa25.17■■□□□ 1.62
NR4A1-222ENST00000567890 ZCCHC6Q5VYS8 1495 aaKnown RBP24.94■■□□□ 1.58
NR4A1-222ENST00000567890 PABPN1Q86U42 306 aaKnown RBP eCLIP24.9■■□□□ 1.58
NR4A1-222ENST00000567890 DCAF1Q9Y4B6 1507 aa24.88■■□□□ 1.57
NR4A1-222ENST00000567890 DNAJC5BQ9UF47 199 aa24.82■■□□□ 1.56
NR4A1-222ENST00000567890 UNC13AQ9UPW8 1703 aa24.82■■□□□ 1.56
NR4A1-222ENST00000567890 BICRAQ9NZM4 1560 aa24.69■■□□□ 1.54
NR4A1-222ENST00000567890 SHROOM4Q9ULL8 1493 aa24.54■■□□□ 1.52
NR4A1-222ENST00000567890 SCRIBQ14160 1630 aa24.51■■□□□ 1.51
NR4A1-222ENST00000567890 AEBP2Q6ZN18 517 aaPredicted RBP24.27■■□□□ 1.48
NR4A1-222ENST00000567890 EIF4G1Q04637 1599 aaKnown RBP24.11■■□□□ 1.45
NR4A1-222ENST00000567890 CC2D2AQ9P2K1 1620 aa24.1■■□□□ 1.45
NR4A1-222ENST00000567890 CECR2Q9BXF3 1484 aa24.04■■□□□ 1.44
NR4A1-222ENST00000567890 NCAPD3P42695 1498 aa23.43■■□□□ 1.34
NR4A1-222ENST00000567890 CHIC1Q5VXU3 224 aa23.43■■□□□ 1.34
NR4A1-222ENST00000567890 SMARCA4P51532 1647 aa23.38■■□□□ 1.33
NR4A1-222ENST00000567890 ATAD2BQ9ULI0 1458 aa23.37■■□□□ 1.33
NR4A1-222ENST00000567890 SMARCA2P51531 1590 aa23.33■■□□□ 1.33
NR4A1-222ENST00000567890 BAZ1AQ9NRL2 1556 aaPredicted RBP23.32■■□□□ 1.32
NR4A1-222ENST00000567890 HMGXB3Q12766 1538 aa23.26■■□□□ 1.31
NR4A1-222ENST00000567890 BAZ1BQ9UIG0 1483 aaKnown RBP23.18■■□□□ 1.3
NR4A1-222ENST00000567890 PEG3Q9GZU2 1588 aa23.14■■□□□ 1.3
NR4A1-222ENST00000567890 MROH2BQ7Z745 1585 aa23.14■■□□□ 1.29
NR4A1-222ENST00000567890 ERCC6Q03468 1493 aa23.09■■□□□ 1.29
NR4A1-222ENST00000567890 NESP48681 1621 aa22.97■■□□□ 1.27
NR4A1-222ENST00000567890 CUX2O14529 1486 aa22.94■■□□□ 1.26
NR4A1-222ENST00000567890 LAMC3Q9Y6N6 1575 aa22.85■■□□□ 1.25
NR4A1-222ENST00000567890 WIZO95785 1651 aa22.85■■□□□ 1.25
NR4A1-222ENST00000567890 PDS5BQ9NTI5 1447 aa22.76■■□□□ 1.23
NR4A1-222ENST00000567890 RSF1Q96T23 1441 aaPredicted RBP22.74■■□□□ 1.23
NR4A1-222ENST00000567890 CADPSQ9ULU8 1353 aa22.73■■□□□ 1.23
NR4A1-222ENST00000567890 THOC2Q8NI27 1593 aaKnown RBP22.68■■□□□ 1.22
NR4A1-222ENST00000567890 DNAJC5Q9H3Z4 198 aa22.68■■□□□ 1.22
NR4A1-222ENST00000567890 KIF21AQ7Z4S6 1674 aa22.65■■□□□ 1.22
NR4A1-222ENST00000567890 TOP2AP11388 1531 aaKnown RBP22.62■■□□□ 1.21
NR4A1-222ENST00000567890 MRC2Q9UBG0 1479 aa22.53■■□□□ 1.2
NR4A1-222ENST00000567890 CFTRP13569 1480 aa22.49■■□□□ 1.19
NR4A1-222ENST00000567890 CEP164Q9UPV0 1460 aa22.49■■□□□ 1.19
NR4A1-222ENST00000567890 FANCD2Q9BXW9 1451 aa22.47■■□□□ 1.19
NR4A1-222ENST00000567890 WDR62O43379 1518 aa22.44■■□□□ 1.18
NR4A1-222ENST00000567890 CCDC88BA6NC98 1476 aa22.35■■□□□ 1.17
NR4A1-222ENST00000567890 URB2Q14146 1524 aaKnown RBP22.25■■□□□ 1.15
NR4A1-222ENST00000567890 PRDM2Q13029 1718 aa22.23■■□□□ 1.15
NR4A1-222ENST00000567890 ABCC8Q09428 1581 aa22.09■■□□□ 1.13
NR4A1-222ENST00000567890 TOPBP1Q92547 1522 aa22.06■■□□□ 1.12
NR4A1-222ENST00000567890 IFT140Q96RY7 1462 aa22.03■■□□□ 1.12
NR4A1-222ENST00000567890 DNMBPQ6XZF7 1577 aa21.99■■□□□ 1.11
NR4A1-222ENST00000567890 SUPT5HO00267 1087 aaKnown RBP21.95■■□□□ 1.1
NR4A1-222ENST00000567890 ZNF608Q9ULD9 1512 aaPredicted RBP21.95■■□□□ 1.1
NR4A1-222ENST00000567890 OSCARQ8IYS5 282 aa21.94■■□□□ 1.1
NR4A1-222ENST00000567890 POLA1P09884 1462 aaPredicted RBP21.84■■□□□ 1.09
NR4A1-222ENST00000567890 EIF4G3O43432 1585 aaKnown RBP21.83■■□□□ 1.09
NR4A1-222ENST00000567890 TRIM41Q8WV44 630 aa21.83■■□□□ 1.09
NR4A1-222ENST00000567890 TARBP1Q13395 1621 aaKnown RBP21.81■■□□□ 1.08
NR4A1-222ENST00000567890 AQRO60306 1485 aaKnown RBP eCLIP21.79■■□□□ 1.08
NR4A1-222ENST00000567890 SOGA1O94964 1423 aa21.76■■□□□ 1.07
NR4A1-222ENST00000567890 RAD54L2Q9Y4B4 1467 aa21.76■■□□□ 1.07
NR4A1-222ENST00000567890 FGD5Q6ZNL6 1462 aa21.74■■□□□ 1.07
NR4A1-222ENST00000567890 CUX1P39880 1505 aa21.74■■□□□ 1.07
NR4A1-222ENST00000567890 TDRD9Q8NDG6 1382 aaKnown RBP21.69■■□□□ 1.06
NR4A1-222ENST00000567890 WDR97A6NE52 1622 aa21.66■■□□□ 1.06
NR4A1-222ENST00000567890 FBLN2P98095 1184 aa21.66■■□□□ 1.06
NR4A1-222ENST00000567890 CHD1O14646 1710 aa21.6■■□□□ 1.05
NR4A1-222ENST00000567890 RIMBP3CA6NJZ7 1639 aa21.58■■□□□ 1.05
NR4A1-222ENST00000567890 RIMBP3BA6NNM3 1639 aa21.58■■□□□ 1.05
NR4A1-222ENST00000567890 RIMBP3Q9UFD9 1639 aa21.58■■□□□ 1.05
NR4A1-222ENST00000567890 SNAPC4Q5SXM2 1469 aa21.58■■□□□ 1.05
NR4A1-222ENST00000567890 ARHGEF11O15085 1522 aa21.56■■□□□ 1.04
NR4A1-222ENST00000567890 GRIN2BQ13224 1484 aa21.56■■□□□ 1.04
NR4A1-222ENST00000567890 MAGI1Q96QZ7 1491 aaPredicted RBP21.53■■□□□ 1.04
NR4A1-222ENST00000567890 CHMP7Q8WUX9 453 aaPredicted RBP21.52■■□□□ 1.04
NR4A1-222ENST00000567890 GAPVD1Q14C86 1478 aa21.51■■□□□ 1.03
NR4A1-222ENST00000567890 ABCA10Q8WWZ4 1543 aa21.5■■□□□ 1.03
NR4A1-222ENST00000567890 WRNQ14191 1432 aaPredicted RBP eCLIP21.49■■□□□ 1.03
NR4A1-222ENST00000567890 SYNJ2O15056 1496 aa21.45■■□□□ 1.03
NR4A1-222ENST00000567890 TOP2BQ02880 1626 aa21.44■■□□□ 1.02
NR4A1-222ENST00000567890 PBRM1Q86U86 1689 aa21.44■■□□□ 1.02
NR4A1-222ENST00000567890 SYNJ1O43426 1573 aa21.43■■□□□ 1.02
NR4A1-222ENST00000567890 ABCA5Q8WWZ7 1642 aa21.43■■□□□ 1.02
NR4A1-222ENST00000567890 BIVM-ERCC5R4GMW8 1640 aa21.43■■□□□ 1.02
NR4A1-222ENST00000567890 CYB5RLQ6IPT4 315 aa21.41■■□□□ 1.02
NR4A1-222ENST00000567890 CLASP1Q7Z460 1538 aa21.39■■□□□ 1.01
NR4A1-222ENST00000567890 ARAP1Q96P48 1450 aa21.35■■□□□ 1.01
NR4A1-222ENST00000567890 ADAMTS12P58397 1594 aa21.27■■□□□ 1
NR4A1-222ENST00000567890 GRIN2AQ12879 1464 aa21.26■□□□□ 0.99
NR4A1-222ENST00000567890 FHAD1B1AJZ9 1412 aa21.25■□□□□ 0.99
NR4A1-222ENST00000567890 ERICH3Q5RHP9 1530 aa21.24■□□□□ 0.99
NR4A1-222ENST00000567890 NUP160Q12769 1436 aa21.18■□□□□ 0.98
NR4A1-222ENST00000567890 CEP170Q5SW79 1584 aa21.15■□□□□ 0.98
NR4A1-222ENST00000567890 TRHP20396 242 aaPredicted RBP21.14■□□□□ 0.97
NR4A1-222ENST00000567890 KIF27Q86VH2 1401 aa21.07■□□□□ 0.96
NR4A1-222ENST00000567890 ERCC6L2Q5T890 1561 aa21.05■□□□□ 0.96
NR4A1-222ENST00000567890 SHROOM2Q13796 1616 aa21.03■□□□□ 0.96
NR4A1-222ENST00000567890 IGF1RP08069 1367 aa21.01■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms