RNA–Protein interactions for RNA: ENST00000567737.1

SMG1-213, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 3

Gene SMG1, Length 721 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-213ENST00000567737 NISCHQ9Y2I1 1504 aa35.57■■■■□ 3.29
SMG1-213ENST00000567737 ABCC9O60706 1549 aa33.19■■■□□ 2.9
SMG1-213ENST00000567737 AEBP2Q6ZN18 517 aaPredicted RBP32.61■■■□□ 2.81
SMG1-213ENST00000567737 CCDC180Q9P1Z9 1646 aa32.29■■■□□ 2.76
SMG1-213ENST00000567737 CHIC1Q5VXU3 224 aa32.07■■■□□ 2.72
SMG1-213ENST00000567737 DNAJC5BQ9UF47 199 aa31.88■■■□□ 2.69
SMG1-213ENST00000567737 RB1CC1Q8TDY2 1594 aa31.21■■■□□ 2.59
SMG1-213ENST00000567737 NACADO15069 1562 aa30.77■■■□□ 2.52
SMG1-213ENST00000567737 PABPN1Q86U42 306 aaKnown RBP eCLIP30.77■■■□□ 2.52
SMG1-213ENST00000567737 DCAF8L2P0C7V8 631 aa30.49■■■□□ 2.47
SMG1-213ENST00000567737 UNC13AQ9UPW8 1703 aa30.39■■■□□ 2.46
SMG1-213ENST00000567737 BICRAQ9NZM4 1560 aa30.27■■■□□ 2.44
SMG1-213ENST00000567737 MYO15BQ96JP2 1530 aa30.06■■■□□ 2.4
SMG1-213ENST00000567737 CECR2Q9BXF3 1484 aa29.99■■■□□ 2.39
SMG1-213ENST00000567737 DNAJC5Q9H3Z4 198 aa29.95■■■□□ 2.39
SMG1-213ENST00000567737 CC2D2AQ9P2K1 1620 aa29.91■■■□□ 2.38
SMG1-213ENST00000567737 SHROOM4Q9ULL8 1493 aa29.84■■■□□ 2.37
SMG1-213ENST00000567737 EIF4G1Q04637 1599 aaKnown RBP29.64■■■□□ 2.34
SMG1-213ENST00000567737 SCRIBQ14160 1630 aa29.39■■■□□ 2.3
SMG1-213ENST00000567737 DCAF1Q9Y4B6 1507 aa29.33■■■□□ 2.29
SMG1-213ENST00000567737 ZCCHC6Q5VYS8 1495 aaKnown RBP29.29■■■□□ 2.28
SMG1-213ENST00000567737 CUX2O14529 1486 aa28.98■■■□□ 2.23
SMG1-213ENST00000567737 ERCC6Q03468 1493 aa28.76■■■□□ 2.19
SMG1-213ENST00000567737 NCAPD3P42695 1498 aa28.41■■■□□ 2.14
SMG1-213ENST00000567737 TRIM41Q8WV44 630 aa28.32■■■□□ 2.12
SMG1-213ENST00000567737 NESP48681 1621 aa28.23■■■□□ 2.11
SMG1-213ENST00000567737 ATAD2BQ9ULI0 1458 aa28.21■■■□□ 2.11
SMG1-213ENST00000567737 PHF23Q9BUL5 403 aaPredicted RBP28.2■■■□□ 2.1
SMG1-213ENST00000567737 HMGXB3Q12766 1538 aa28.12■■■□□ 2.09
SMG1-213ENST00000567737 THOC2Q8NI27 1593 aaKnown RBP28.11■■■□□ 2.09
SMG1-213ENST00000567737 SMARCA2P51531 1590 aa28.09■■■□□ 2.09
SMG1-213ENST00000567737 SMARCA4P51532 1647 aa27.93■■■□□ 2.06
SMG1-213ENST00000567737 LAMC3Q9Y6N6 1575 aa27.92■■■□□ 2.06
SMG1-213ENST00000567737 BAZ1BQ9UIG0 1483 aaKnown RBP27.91■■■□□ 2.06
SMG1-213ENST00000567737 PDS5BQ9NTI5 1447 aa27.83■■■□□ 2.05
SMG1-213ENST00000567737 KIF21AQ7Z4S6 1674 aa27.81■■■□□ 2.04
SMG1-213ENST00000567737 SENP3Q9H4L4 574 aaPredicted RBP27.7■■■□□ 2.02
SMG1-213ENST00000567737 BAZ1AQ9NRL2 1556 aaPredicted RBP27.69■■■□□ 2.02
SMG1-213ENST00000567737 PEG3Q9GZU2 1588 aa27.66■■■□□ 2.02
SMG1-213ENST00000567737 MRC2Q9UBG0 1479 aa27.62■■■□□ 2.01
SMG1-213ENST00000567737 WDR62O43379 1518 aa27.56■■■□□ 2
SMG1-213ENST00000567737 OSCARQ8IYS5 282 aa27.54■■■□□ 2
SMG1-213ENST00000567737 CADPSQ9ULU8 1353 aa27.53■■■□□ 2
SMG1-213ENST00000567737 MROH2BQ7Z745 1585 aa27.39■■□□□ 1.98
SMG1-213ENST00000567737 CEP164Q9UPV0 1460 aa27.34■■□□□ 1.97
SMG1-213ENST00000567737 FANCD2Q9BXW9 1451 aa27.22■■□□□ 1.95
SMG1-213ENST00000567737 RIMBP3CA6NJZ7 1639 aa27.22■■□□□ 1.95
SMG1-213ENST00000567737 RIMBP3BA6NNM3 1639 aa27.22■■□□□ 1.95
SMG1-213ENST00000567737 RIMBP3Q9UFD9 1639 aa27.22■■□□□ 1.95
SMG1-213ENST00000567737 ARHGEF11O15085 1522 aa27.06■■□□□ 1.92
SMG1-213ENST00000567737 URB2Q14146 1524 aaKnown RBP27.02■■□□□ 1.92
SMG1-213ENST00000567737 CFTRP13569 1480 aa27.01■■□□□ 1.91
SMG1-213ENST00000567737 WIZO95785 1651 aa27.01■■□□□ 1.91
SMG1-213ENST00000567737 TRHP20396 242 aaPredicted RBP26.97■■□□□ 1.91
SMG1-213ENST00000567737 CYB5RLQ6IPT4 315 aa26.94■■□□□ 1.9
SMG1-213ENST00000567737 ZNF608Q9ULD9 1512 aaPredicted RBP26.84■■□□□ 1.89
SMG1-213ENST00000567737 IFT140Q96RY7 1462 aa26.83■■□□□ 1.89
SMG1-213ENST00000567737 ARAP1Q96P48 1450 aa26.73■■□□□ 1.87
SMG1-213ENST00000567737 EIF4G3O43432 1585 aaKnown RBP26.64■■□□□ 1.86
SMG1-213ENST00000567737 TOP2AP11388 1531 aaKnown RBP26.64■■□□□ 1.85
SMG1-213ENST00000567737 RSF1Q96T23 1441 aaPredicted RBP26.61■■□□□ 1.85
SMG1-213ENST00000567737 PRDM2Q13029 1718 aa26.61■■□□□ 1.85
SMG1-213ENST00000567737 TOPBP1Q92547 1522 aa26.59■■□□□ 1.85
SMG1-213ENST00000567737 CHD1O14646 1710 aa26.58■■□□□ 1.85
SMG1-213ENST00000567737 FBLN2P98095 1184 aa26.56■■□□□ 1.84
SMG1-213ENST00000567737 ABCC8Q09428 1581 aa26.5■■□□□ 1.83
SMG1-213ENST00000567737 AQRO60306 1485 aaKnown RBP eCLIP26.49■■□□□ 1.83
SMG1-213ENST00000567737 DNMBPQ6XZF7 1577 aa26.41■■□□□ 1.82
SMG1-213ENST00000567737 TARBP1Q13395 1621 aaKnown RBP26.39■■□□□ 1.81
SMG1-213ENST00000567737 CCDC88BA6NC98 1476 aa26.34■■□□□ 1.81
SMG1-213ENST00000567737 CLASP1Q7Z460 1538 aa26.28■■□□□ 1.8
SMG1-213ENST00000567737 POLA1P09884 1462 aaPredicted RBP26.25■■□□□ 1.79
SMG1-213ENST00000567737 SYNJ1O43426 1573 aa26.23■■□□□ 1.79
SMG1-213ENST00000567737 CHMP7Q8WUX9 453 aaPredicted RBP26.22■■□□□ 1.79
SMG1-213ENST00000567737 SNAPC4Q5SXM2 1469 aa26.22■■□□□ 1.79
SMG1-213ENST00000567737 TDRD9Q8NDG6 1382 aaKnown RBP26.2■■□□□ 1.79
SMG1-213ENST00000567737 RAD54L2Q9Y4B4 1467 aa26.18■■□□□ 1.78
SMG1-213ENST00000567737 SOGA1O94964 1423 aa26.15■■□□□ 1.78
SMG1-213ENST00000567737 PLPPR3Q6T4P5 718 aa26.12■■□□□ 1.77
SMG1-213ENST00000567737 MAGI1Q96QZ7 1491 aaPredicted RBP26.11■■□□□ 1.77
SMG1-213ENST00000567737 GAPVD1Q14C86 1478 aa26.11■■□□□ 1.77
SMG1-213ENST00000567737 WDR97A6NE52 1622 aa26.1■■□□□ 1.77
SMG1-213ENST00000567737 SYNJ2O15056 1496 aa26.04■■□□□ 1.76
SMG1-213ENST00000567737 GRIN2BQ13224 1484 aa26.02■■□□□ 1.76
SMG1-213ENST00000567737 FGD5Q6ZNL6 1462 aa25.98■■□□□ 1.75
SMG1-213ENST00000567737 PBRM1Q86U86 1689 aa25.8■■□□□ 1.72
SMG1-213ENST00000567737 CUX1P39880 1505 aa25.79■■□□□ 1.72
SMG1-213ENST00000567737 ERCC6L2Q5T890 1561 aa25.79■■□□□ 1.72
SMG1-213ENST00000567737 ILDR1Q86SU0 546 aaPredicted RBP25.73■■□□□ 1.71
SMG1-213ENST00000567737 KIF13AQ9H1H9 1805 aa25.7■■□□□ 1.7
SMG1-213ENST00000567737 CEP170Q5SW79 1584 aa25.69■■□□□ 1.7
SMG1-213ENST00000567737 GRIN2AQ12879 1464 aa25.68■■□□□ 1.7
SMG1-213ENST00000567737 FOXD1Q16676 465 aa25.65■■□□□ 1.7
SMG1-213ENST00000567737 ABCA5Q8WWZ7 1642 aa25.64■■□□□ 1.7
SMG1-213ENST00000567737 ABCA10Q8WWZ4 1543 aa25.63■■□□□ 1.69
SMG1-213ENST00000567737 NUP160Q12769 1436 aa25.62■■□□□ 1.69
SMG1-213ENST00000567737 KDM4FA0A1W2PPD8 638 aa25.58■■□□□ 1.69
SMG1-213ENST00000567737 SHROOM2Q13796 1616 aa25.57■■□□□ 1.68
SMG1-213ENST00000567737 FAM69CQ0P6D2 419 aa25.57■■□□□ 1.68
SMG1-213ENST00000567737 ADAMTS12P58397 1594 aa25.53■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms