RNA–Protein interactions for RNA: ENST00000567071.5

CAPN3-216, Transcript of calpain 3, humanhuman

TSL 4

Gene CAPN3, Length 563 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-216ENST00000567071 NISCHQ9Y2I1 1504 aa25.21■■□□□ 1.63
CAPN3-216ENST00000567071 ABCC9O60706 1549 aa23.98■■□□□ 1.43
CAPN3-216ENST00000567071 DNAJC5BQ9UF47 199 aa23.21■■□□□ 1.31
CAPN3-216ENST00000567071 CCDC180Q9P1Z9 1646 aa23.1■■□□□ 1.29
CAPN3-216ENST00000567071 RB1CC1Q8TDY2 1594 aa22.46■■□□□ 1.19
CAPN3-216ENST00000567071 PABPN1Q86U42 306 aaKnown RBP eCLIP22.15■■□□□ 1.14
CAPN3-216ENST00000567071 DNAJC5Q9H3Z4 198 aa22.13■■□□□ 1.13
CAPN3-216ENST00000567071 NACADO15069 1562 aa22.06■■□□□ 1.12
CAPN3-216ENST00000567071 UNC13AQ9UPW8 1703 aa21.88■■□□□ 1.09
CAPN3-216ENST00000567071 DCAF8L2P0C7V8 631 aa21.77■■□□□ 1.08
CAPN3-216ENST00000567071 BICRAQ9NZM4 1560 aa21.73■■□□□ 1.07
CAPN3-216ENST00000567071 CECR2Q9BXF3 1484 aa21.72■■□□□ 1.07
CAPN3-216ENST00000567071 AEBP2Q6ZN18 517 aaPredicted RBP21.68■■□□□ 1.06
CAPN3-216ENST00000567071 CC2D2AQ9P2K1 1620 aa21.61■■□□□ 1.05
CAPN3-216ENST00000567071 SHROOM4Q9ULL8 1493 aa21.46■■□□□ 1.03
CAPN3-216ENST00000567071 MYO15BQ96JP2 1530 aa21.41■■□□□ 1.02
CAPN3-216ENST00000567071 EIF4G1Q04637 1599 aaKnown RBP21.33■■□□□ 1.01
CAPN3-216ENST00000567071 CUX2O14529 1486 aa21.12■□□□□ 0.97
CAPN3-216ENST00000567071 SCRIBQ14160 1630 aa20.96■□□□□ 0.95
CAPN3-216ENST00000567071 ERCC6Q03468 1493 aa20.87■□□□□ 0.93
CAPN3-216ENST00000567071 TRIM41Q8WV44 630 aa20.82■□□□□ 0.92
CAPN3-216ENST00000567071 DCAF1Q9Y4B6 1507 aa20.78■□□□□ 0.92
CAPN3-216ENST00000567071 ZCCHC6Q5VYS8 1495 aaKnown RBP20.68■□□□□ 0.9
CAPN3-216ENST00000567071 CHIC1Q5VXU3 224 aa20.67■□□□□ 0.9
CAPN3-216ENST00000567071 NCAPD3P42695 1498 aa20.33■□□□□ 0.85
CAPN3-216ENST00000567071 THOC2Q8NI27 1593 aaKnown RBP20.3■□□□□ 0.84
CAPN3-216ENST00000567071 NESP48681 1621 aa20.28■□□□□ 0.84
CAPN3-216ENST00000567071 SMARCA2P51531 1590 aa20.16■□□□□ 0.82
CAPN3-216ENST00000567071 HMGXB3Q12766 1538 aa20.12■□□□□ 0.81
CAPN3-216ENST00000567071 ATAD2BQ9ULI0 1458 aa20.12■□□□□ 0.81
CAPN3-216ENST00000567071 LAMC3Q9Y6N6 1575 aa20.08■□□□□ 0.8
CAPN3-216ENST00000567071 KIF21AQ7Z4S6 1674 aa20.04■□□□□ 0.8
CAPN3-216ENST00000567071 BAZ1AQ9NRL2 1556 aaPredicted RBP20.02■□□□□ 0.8
CAPN3-216ENST00000567071 PDS5BQ9NTI5 1447 aa20.02■□□□□ 0.79
CAPN3-216ENST00000567071 OSCARQ8IYS5 282 aa19.99■□□□□ 0.79
CAPN3-216ENST00000567071 BAZ1BQ9UIG0 1483 aaKnown RBP19.94■□□□□ 0.78
CAPN3-216ENST00000567071 SMARCA4P51532 1647 aa19.89■□□□□ 0.77
CAPN3-216ENST00000567071 MRC2Q9UBG0 1479 aa19.87■□□□□ 0.77
CAPN3-216ENST00000567071 WDR62O43379 1518 aa19.81■□□□□ 0.76
CAPN3-216ENST00000567071 RIMBP3CA6NJZ7 1639 aa19.8■□□□□ 0.76
CAPN3-216ENST00000567071 RIMBP3BA6NNM3 1639 aa19.8■□□□□ 0.76
CAPN3-216ENST00000567071 RIMBP3Q9UFD9 1639 aa19.8■□□□□ 0.76
CAPN3-216ENST00000567071 TRHP20396 242 aaPredicted RBP19.73■□□□□ 0.75
CAPN3-216ENST00000567071 PEG3Q9GZU2 1588 aa19.68■□□□□ 0.74
CAPN3-216ENST00000567071 CADPSQ9ULU8 1353 aa19.68■□□□□ 0.74
CAPN3-216ENST00000567071 ARHGEF11O15085 1522 aa19.64■□□□□ 0.73
CAPN3-216ENST00000567071 CEP164Q9UPV0 1460 aa19.62■□□□□ 0.73
CAPN3-216ENST00000567071 CYB5RLQ6IPT4 315 aa19.57■□□□□ 0.72
CAPN3-216ENST00000567071 FANCD2Q9BXW9 1451 aa19.48■□□□□ 0.71
CAPN3-216ENST00000567071 MROH2BQ7Z745 1585 aa19.38■□□□□ 0.69
CAPN3-216ENST00000567071 ARAP1Q96P48 1450 aa19.35■□□□□ 0.69
CAPN3-216ENST00000567071 URB2Q14146 1524 aaKnown RBP19.33■□□□□ 0.68
CAPN3-216ENST00000567071 IFT140Q96RY7 1462 aa19.25■□□□□ 0.67
CAPN3-216ENST00000567071 RSF1Q96T23 1441 aaPredicted RBP19.25■□□□□ 0.67
CAPN3-216ENST00000567071 CFTRP13569 1480 aa19.24■□□□□ 0.67
CAPN3-216ENST00000567071 ZNF608Q9ULD9 1512 aaPredicted RBP19.24■□□□□ 0.67
CAPN3-216ENST00000567071 CHD1O14646 1710 aa19.19■□□□□ 0.66
CAPN3-216ENST00000567071 EIF4G3O43432 1585 aaKnown RBP19.14■□□□□ 0.65
CAPN3-216ENST00000567071 WIZO95785 1651 aa19.12■□□□□ 0.65
CAPN3-216ENST00000567071 FBLN2P98095 1184 aa19.12■□□□□ 0.65
CAPN3-216ENST00000567071 ILDR1Q86SU0 546 aaPredicted RBP19.09■□□□□ 0.65
CAPN3-216ENST00000567071 PRDM2Q13029 1718 aa19.04■□□□□ 0.64
CAPN3-216ENST00000567071 TOPBP1Q92547 1522 aa18.98■□□□□ 0.63
CAPN3-216ENST00000567071 ABCC8Q09428 1581 aa18.96■□□□□ 0.63
CAPN3-216ENST00000567071 AQRO60306 1485 aaKnown RBP eCLIP18.96■□□□□ 0.63
CAPN3-216ENST00000567071 CLASP1Q7Z460 1538 aa18.9■□□□□ 0.62
CAPN3-216ENST00000567071 SYNJ1O43426 1573 aa18.89■□□□□ 0.62
CAPN3-216ENST00000567071 TARBP1Q13395 1621 aaKnown RBP18.87■□□□□ 0.61
CAPN3-216ENST00000567071 DNMBPQ6XZF7 1577 aa18.85■□□□□ 0.61
CAPN3-216ENST00000567071 TOP2AP11388 1531 aaKnown RBP18.85■□□□□ 0.61
CAPN3-216ENST00000567071 CHMP7Q8WUX9 453 aaPredicted RBP18.82■□□□□ 0.6
CAPN3-216ENST00000567071 GAPVD1Q14C86 1478 aa18.82■□□□□ 0.6
CAPN3-216ENST00000567071 SNAPC4Q5SXM2 1469 aa18.77■□□□□ 0.6
CAPN3-216ENST00000567071 POLA1P09884 1462 aaPredicted RBP18.72■□□□□ 0.59
CAPN3-216ENST00000567071 MAGI1Q96QZ7 1491 aaPredicted RBP18.71■□□□□ 0.59
CAPN3-216ENST00000567071 TDRD9Q8NDG6 1382 aaKnown RBP18.7■□□□□ 0.58
CAPN3-216ENST00000567071 WDR97A6NE52 1622 aa18.7■□□□□ 0.58
CAPN3-216ENST00000567071 SYNJ2O15056 1496 aa18.65■□□□□ 0.58
CAPN3-216ENST00000567071 SOGA1O94964 1423 aa18.65■□□□□ 0.58
CAPN3-216ENST00000567071 RAD54L2Q9Y4B4 1467 aa18.65■□□□□ 0.58
CAPN3-216ENST00000567071 KIF13AQ9H1H9 1805 aa18.64■□□□□ 0.57
CAPN3-216ENST00000567071 KDM4FA0A1W2PPD8 638 aa18.63■□□□□ 0.57
CAPN3-216ENST00000567071 GRIN2BQ13224 1484 aa18.61■□□□□ 0.57
CAPN3-216ENST00000567071 CCDC88BA6NC98 1476 aa18.6■□□□□ 0.57
CAPN3-216ENST00000567071 KDM6BO15054 1643 aa18.49■□□□□ 0.55
CAPN3-216ENST00000567071 ERCC6L2Q5T890 1561 aa18.49■□□□□ 0.55
CAPN3-216ENST00000567071 FAM69CQ0P6D2 419 aa18.48■□□□□ 0.55
CAPN3-216ENST00000567071 PBRM1Q86U86 1689 aa18.47■□□□□ 0.55
CAPN3-216ENST00000567071 FGD5Q6ZNL6 1462 aa18.47■□□□□ 0.55
CAPN3-216ENST00000567071 CEP170Q5SW79 1584 aa18.43■□□□□ 0.54
CAPN3-216ENST00000567071 ABCC10Q5T3U5 1492 aa18.42■□□□□ 0.54
CAPN3-216ENST00000567071 NPM1P06748 294 aaKnown RBP eCLIP18.4■□□□□ 0.54
CAPN3-216ENST00000567071 HECW2Q9P2P5 1572 aa18.38■□□□□ 0.53
CAPN3-216ENST00000567071 FBXO41Q8TF61 875 aa18.37■□□□□ 0.53
CAPN3-216ENST00000567071 GRIN2AQ12879 1464 aa18.35■□□□□ 0.53
CAPN3-216ENST00000567071 DIP2BQ9P265 1576 aa18.34■□□□□ 0.53
CAPN3-216ENST00000567071 SHROOM2Q13796 1616 aa18.33■□□□□ 0.52
CAPN3-216ENST00000567071 TSPOAP1O95153 1857 aa18.32■□□□□ 0.52
CAPN3-216ENST00000567071 MAPKBP1O60336 1514 aa18.32■□□□□ 0.52
CAPN3-216ENST00000567071 ADGRL1O94910 1474 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms