RNA–Protein interactions for RNA: ENST00000567003.1

PALB2-205, Transcript of partner and localizer of BRCA2, humanhuman

TSL 3

Gene PALB2, Length 789 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PALB2-205ENST00000567003 NISCHQ9Y2I1 1504 aa39.33■■■■□ 3.89
PALB2-205ENST00000567003 ABCC9O60706 1549 aa35.74■■■■□ 3.31
PALB2-205ENST00000567003 CCDC180Q9P1Z9 1646 aa35.39■■■■□ 3.26
PALB2-205ENST00000567003 RB1CC1Q8TDY2 1594 aa33.81■■■■□ 3
PALB2-205ENST00000567003 DNAJC5BQ9UF47 199 aa33.76■■■□□ 2.99
PALB2-205ENST00000567003 NACADO15069 1562 aa33.49■■■□□ 2.95
PALB2-205ENST00000567003 DCAF8L2P0C7V8 631 aa33.35■■■□□ 2.93
PALB2-205ENST00000567003 PABPN1Q86U42 306 aaKnown RBP eCLIP33.24■■■□□ 2.91
PALB2-205ENST00000567003 UNC13AQ9UPW8 1703 aa33.15■■■□□ 2.9
PALB2-205ENST00000567003 BICRAQ9NZM4 1560 aa32.91■■■□□ 2.86
PALB2-205ENST00000567003 MYO15BQ96JP2 1530 aa32.87■■■□□ 2.85
PALB2-205ENST00000567003 ZCCHC6Q5VYS8 1495 aaKnown RBP32.55■■■□□ 2.8
PALB2-205ENST00000567003 DCAF1Q9Y4B6 1507 aa32.4■■■□□ 2.78
PALB2-205ENST00000567003 SCRIBQ14160 1630 aa32.34■■■□□ 2.77
PALB2-205ENST00000567003 SHROOM4Q9ULL8 1493 aa32.28■■■□□ 2.76
PALB2-205ENST00000567003 CC2D2AQ9P2K1 1620 aa32.25■■■□□ 2.75
PALB2-205ENST00000567003 CECR2Q9BXF3 1484 aa32.17■■■□□ 2.74
PALB2-205ENST00000567003 EIF4G1Q04637 1599 aaKnown RBP32.1■■■□□ 2.73
PALB2-205ENST00000567003 DNAJC5Q9H3Z4 198 aa31.09■■■□□ 2.57
PALB2-205ENST00000567003 NCAPD3P42695 1498 aa30.92■■■□□ 2.54
PALB2-205ENST00000567003 ATAD2BQ9ULI0 1458 aa30.84■■■□□ 2.53
PALB2-205ENST00000567003 ERCC6Q03468 1493 aa30.82■■■□□ 2.53
PALB2-205ENST00000567003 CUX2O14529 1486 aa30.81■■■□□ 2.52
PALB2-205ENST00000567003 SMARCA4P51532 1647 aa30.76■■■□□ 2.52
PALB2-205ENST00000567003 SMARCA2P51531 1590 aa30.7■■■□□ 2.5
PALB2-205ENST00000567003 HMGXB3Q12766 1538 aa30.68■■■□□ 2.5
PALB2-205ENST00000567003 NESP48681 1621 aa30.65■■■□□ 2.5
PALB2-205ENST00000567003 BAZ1BQ9UIG0 1483 aaKnown RBP30.53■■■□□ 2.48
PALB2-205ENST00000567003 BAZ1AQ9NRL2 1556 aaPredicted RBP30.52■■■□□ 2.48
PALB2-205ENST00000567003 PEG3Q9GZU2 1588 aa30.41■■■□□ 2.46
PALB2-205ENST00000567003 MROH2BQ7Z745 1585 aa30.36■■■□□ 2.45
PALB2-205ENST00000567003 THOC2Q8NI27 1593 aaKnown RBP30.36■■■□□ 2.45
PALB2-205ENST00000567003 LAMC3Q9Y6N6 1575 aa30.28■■■□□ 2.44
PALB2-205ENST00000567003 KIF21AQ7Z4S6 1674 aa30.24■■■□□ 2.43
PALB2-205ENST00000567003 PDS5BQ9NTI5 1447 aa30.1■■■□□ 2.41
PALB2-205ENST00000567003 WIZO95785 1651 aa30■■■□□ 2.39
PALB2-205ENST00000567003 CADPSQ9ULU8 1353 aa29.98■■■□□ 2.39
PALB2-205ENST00000567003 MRC2Q9UBG0 1479 aa29.91■■■□□ 2.38
PALB2-205ENST00000567003 WDR62O43379 1518 aa29.84■■■□□ 2.37
PALB2-205ENST00000567003 CEP164Q9UPV0 1460 aa29.74■■■□□ 2.35
PALB2-205ENST00000567003 TRIM41Q8WV44 630 aa29.73■■■□□ 2.35
PALB2-205ENST00000567003 FANCD2Q9BXW9 1451 aa29.68■■■□□ 2.34
PALB2-205ENST00000567003 CFTRP13569 1480 aa29.6■■■□□ 2.33
PALB2-205ENST00000567003 RSF1Q96T23 1441 aaPredicted RBP29.59■■■□□ 2.33
PALB2-205ENST00000567003 TOP2AP11388 1531 aaKnown RBP29.55■■■□□ 2.32
PALB2-205ENST00000567003 AEBP2Q6ZN18 517 aaPredicted RBP29.53■■■□□ 2.32
PALB2-205ENST00000567003 URB2Q14146 1524 aaKnown RBP29.5■■■□□ 2.31
PALB2-205ENST00000567003 OSCARQ8IYS5 282 aa29.34■■■□□ 2.29
PALB2-205ENST00000567003 PRDM2Q13029 1718 aa29.32■■■□□ 2.28
PALB2-205ENST00000567003 CCDC88BA6NC98 1476 aa29.23■■■□□ 2.27
PALB2-205ENST00000567003 ZNF608Q9ULD9 1512 aaPredicted RBP29.2■■■□□ 2.26
PALB2-205ENST00000567003 CHIC1Q5VXU3 224 aa29.15■■■□□ 2.26
PALB2-205ENST00000567003 IFT140Q96RY7 1462 aa29.12■■■□□ 2.25
PALB2-205ENST00000567003 TOPBP1Q92547 1522 aa29.1■■■□□ 2.25
PALB2-205ENST00000567003 RIMBP3CA6NJZ7 1639 aa29.09■■■□□ 2.25
PALB2-205ENST00000567003 RIMBP3BA6NNM3 1639 aa29.09■■■□□ 2.25
PALB2-205ENST00000567003 RIMBP3Q9UFD9 1639 aa29.09■■■□□ 2.25
PALB2-205ENST00000567003 EIF4G3O43432 1585 aaKnown RBP29.01■■■□□ 2.23
PALB2-205ENST00000567003 DNMBPQ6XZF7 1577 aa28.96■■■□□ 2.23
PALB2-205ENST00000567003 ARHGEF11O15085 1522 aa28.95■■■□□ 2.23
PALB2-205ENST00000567003 ABCC8Q09428 1581 aa28.91■■■□□ 2.22
PALB2-205ENST00000567003 TARBP1Q13395 1621 aaKnown RBP28.87■■■□□ 2.21
PALB2-205ENST00000567003 AQRO60306 1485 aaKnown RBP eCLIP28.87■■■□□ 2.212e-7■□□□□ 8.7
PALB2-205ENST00000567003 CHD1O14646 1710 aa28.86■■■□□ 2.21
PALB2-205ENST00000567003 POLA1P09884 1462 aaPredicted RBP28.79■■■□□ 2.2
PALB2-205ENST00000567003 CYB5RLQ6IPT4 315 aa28.74■■■□□ 2.19
PALB2-205ENST00000567003 RAD54L2Q9Y4B4 1467 aa28.73■■■□□ 2.19
PALB2-205ENST00000567003 FBLN2P98095 1184 aa28.72■■■□□ 2.19
PALB2-205ENST00000567003 ARAP1Q96P48 1450 aa28.67■■■□□ 2.18
PALB2-205ENST00000567003 TDRD9Q8NDG6 1382 aaKnown RBP28.64■■■□□ 2.18
PALB2-205ENST00000567003 SOGA1O94964 1423 aa28.62■■■□□ 2.17
PALB2-205ENST00000567003 FGD5Q6ZNL6 1462 aa28.59■■■□□ 2.17
PALB2-205ENST00000567003 SNAPC4Q5SXM2 1469 aa28.58■■■□□ 2.17
PALB2-205ENST00000567003 CUX1P39880 1505 aa28.54■■■□□ 2.16
PALB2-205ENST00000567003 TRHP20396 242 aaPredicted RBP28.51■■■□□ 2.15
PALB2-205ENST00000567003 CLASP1Q7Z460 1538 aa28.48■■■□□ 2.15
PALB2-205ENST00000567003 WDR97A6NE52 1622 aa28.46■■■□□ 2.15
PALB2-205ENST00000567003 MAGI1Q96QZ7 1491 aaPredicted RBP28.41■■■□□ 2.14
PALB2-205ENST00000567003 CHMP7Q8WUX9 453 aaPredicted RBP28.41■■■□□ 2.14
PALB2-205ENST00000567003 GRIN2BQ13224 1484 aa28.4■■■□□ 2.14
PALB2-205ENST00000567003 SYNJ1O43426 1573 aa28.4■■■□□ 2.14
PALB2-205ENST00000567003 PBRM1Q86U86 1689 aa28.34■■■□□ 2.13
PALB2-205ENST00000567003 SYNJ2O15056 1496 aa28.34■■■□□ 2.13
PALB2-205ENST00000567003 GAPVD1Q14C86 1478 aa28.28■■■□□ 2.12
PALB2-205ENST00000567003 ABCA5Q8WWZ7 1642 aa28.22■■■□□ 2.11
PALB2-205ENST00000567003 ABCA10Q8WWZ4 1543 aa28.2■■■□□ 2.1
PALB2-205ENST00000567003 SUPT5HO00267 1087 aaKnown RBP28.14■■■□□ 2.1
PALB2-205ENST00000567003 ERCC6L2Q5T890 1561 aa28.09■■■□□ 2.09
PALB2-205ENST00000567003 GRIN2AQ12879 1464 aa28.06■■■□□ 2.08
PALB2-205ENST00000567003 ADAMTS12P58397 1594 aa28.04■■■□□ 2.08
PALB2-205ENST00000567003 CEP170Q5SW79 1584 aa28.02■■■□□ 2.08
PALB2-205ENST00000567003 WRNQ14191 1432 aaPredicted RBP eCLIP28.01■■■□□ 2.08
PALB2-205ENST00000567003 BIVM-ERCC5R4GMW8 1640 aa27.98■■■□□ 2.07
PALB2-205ENST00000567003 TOP2BQ02880 1626 aa27.96■■■□□ 2.07
PALB2-205ENST00000567003 NUP160Q12769 1436 aa27.96■■■□□ 2.07
PALB2-205ENST00000567003 FHAD1B1AJZ9 1412 aa27.89■■■□□ 2.06
PALB2-205ENST00000567003 SHROOM2Q13796 1616 aa27.88■■■□□ 2.05
PALB2-205ENST00000567003 ERICH3Q5RHP9 1530 aa27.82■■■□□ 2.04
PALB2-205ENST00000567003 PRG4Q92954 1404 aaPredicted RBP27.73■■■□□ 2.03
PALB2-205ENST00000567003 KIF13AQ9H1H9 1805 aa27.69■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms