RNA–Protein interactions for RNA: ENST00000566493.1

UBR1-206, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 3

Gene UBR1, Length 598 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-206ENST00000566493 NISCHQ9Y2I1 1504 aa29.67■■■□□ 2.34
UBR1-206ENST00000566493 AEBP2Q6ZN18 517 aaPredicted RBP27.65■■■□□ 2.02
UBR1-206ENST00000566493 CCDC180Q9P1Z9 1646 aa26.62■■□□□ 1.85
UBR1-206ENST00000566493 ABCC9O60706 1549 aa26.55■■□□□ 1.84
UBR1-206ENST00000566493 CHIC1Q5VXU3 224 aa26.52■■□□□ 1.84
UBR1-206ENST00000566493 RB1CC1Q8TDY2 1594 aa25.32■■□□□ 1.64
UBR1-206ENST00000566493 NACADO15069 1562 aa25.16■■□□□ 1.62
UBR1-206ENST00000566493 DCAF8L2P0C7V8 631 aa25.12■■□□□ 1.61
UBR1-206ENST00000566493 DNAJC5BQ9UF47 199 aa24.81■■□□□ 1.56
UBR1-206ENST00000566493 MYO15BQ96JP2 1530 aa24.81■■□□□ 1.56
UBR1-206ENST00000566493 PABPN1Q86U42 306 aaKnown RBP eCLIP24.74■■□□□ 1.55
UBR1-206ENST00000566493 UNC13AQ9UPW8 1703 aa24.72■■□□□ 1.55
UBR1-206ENST00000566493 ZCCHC6Q5VYS8 1495 aaKnown RBP24.59■■□□□ 1.53
UBR1-206ENST00000566493 BICRAQ9NZM4 1560 aa24.52■■□□□ 1.52
UBR1-206ENST00000566493 DCAF1Q9Y4B6 1507 aa24.51■■□□□ 1.51
UBR1-206ENST00000566493 SCRIBQ14160 1630 aa24.25■■□□□ 1.47
UBR1-206ENST00000566493 SHROOM4Q9ULL8 1493 aa24.24■■□□□ 1.47
UBR1-206ENST00000566493 CC2D2AQ9P2K1 1620 aa23.99■■□□□ 1.43
UBR1-206ENST00000566493 EIF4G1Q04637 1599 aaKnown RBP23.95■■□□□ 1.42
UBR1-206ENST00000566493 CECR2Q9BXF3 1484 aa23.92■■□□□ 1.42
UBR1-206ENST00000566493 SENP3Q9H4L4 574 aaPredicted RBP23.46■■□□□ 1.35
UBR1-206ENST00000566493 PHF23Q9BUL5 403 aaPredicted RBP23.31■■□□□ 1.32
UBR1-206ENST00000566493 NCAPD3P42695 1498 aa23.2■■□□□ 1.3
UBR1-206ENST00000566493 ATAD2BQ9ULI0 1458 aa23.14■■□□□ 1.29
UBR1-206ENST00000566493 SMARCA4P51532 1647 aa23.14■■□□□ 1.29
UBR1-206ENST00000566493 SMARCA2P51531 1590 aa23.11■■□□□ 1.29
UBR1-206ENST00000566493 BAZ1AQ9NRL2 1556 aaPredicted RBP23.05■■□□□ 1.28
UBR1-206ENST00000566493 HMGXB3Q12766 1538 aa23.03■■□□□ 1.28
UBR1-206ENST00000566493 ERCC6Q03468 1493 aa22.96■■□□□ 1.27
UBR1-206ENST00000566493 BAZ1BQ9UIG0 1483 aaKnown RBP22.95■■□□□ 1.26
UBR1-206ENST00000566493 PEG3Q9GZU2 1588 aa22.89■■□□□ 1.26
UBR1-206ENST00000566493 CUX2O14529 1486 aa22.86■■□□□ 1.25
UBR1-206ENST00000566493 MROH2BQ7Z745 1585 aa22.85■■□□□ 1.25
UBR1-206ENST00000566493 NESP48681 1621 aa22.81■■□□□ 1.24
UBR1-206ENST00000566493 DNAJC5Q9H3Z4 198 aa22.78■■□□□ 1.24
UBR1-206ENST00000566493 LAMC3Q9Y6N6 1575 aa22.69■■□□□ 1.22
UBR1-206ENST00000566493 WIZO95785 1651 aa22.6■■□□□ 1.21
UBR1-206ENST00000566493 PDS5BQ9NTI5 1447 aa22.58■■□□□ 1.21
UBR1-206ENST00000566493 THOC2Q8NI27 1593 aaKnown RBP22.55■■□□□ 1.2
UBR1-206ENST00000566493 KIF21AQ7Z4S6 1674 aa22.54■■□□□ 1.2
UBR1-206ENST00000566493 CADPSQ9ULU8 1353 aa22.51■■□□□ 1.19
UBR1-206ENST00000566493 RSF1Q96T23 1441 aaPredicted RBP22.41■■□□□ 1.18
UBR1-206ENST00000566493 MRC2Q9UBG0 1479 aa22.35■■□□□ 1.17
UBR1-206ENST00000566493 TOP2AP11388 1531 aaKnown RBP22.32■■□□□ 1.16
UBR1-206ENST00000566493 CEP164Q9UPV0 1460 aa22.29■■□□□ 1.16
UBR1-206ENST00000566493 WDR62O43379 1518 aa22.28■■□□□ 1.16
UBR1-206ENST00000566493 CFTRP13569 1480 aa22.26■■□□□ 1.15
UBR1-206ENST00000566493 FANCD2Q9BXW9 1451 aa22.26■■□□□ 1.15
UBR1-206ENST00000566493 PRDM2Q13029 1718 aa22.08■■□□□ 1.12
UBR1-206ENST00000566493 CCDC88BA6NC98 1476 aa22.07■■□□□ 1.12
UBR1-206ENST00000566493 URB2Q14146 1524 aaKnown RBP22.05■■□□□ 1.12
UBR1-206ENST00000566493 FOXD1Q16676 465 aa21.88■■□□□ 1.09
UBR1-206ENST00000566493 OSCARQ8IYS5 282 aa21.88■■□□□ 1.09
UBR1-206ENST00000566493 TRIM41Q8WV44 630 aa21.86■■□□□ 1.09
UBR1-206ENST00000566493 ABCC8Q09428 1581 aa21.85■■□□□ 1.09
UBR1-206ENST00000566493 TOPBP1Q92547 1522 aa21.84■■□□□ 1.09
UBR1-206ENST00000566493 IFT140Q96RY7 1462 aa21.83■■□□□ 1.09
UBR1-206ENST00000566493 DNMBPQ6XZF7 1577 aa21.78■■□□□ 1.08
UBR1-206ENST00000566493 ZNF608Q9ULD9 1512 aaPredicted RBP21.76■■□□□ 1.07
UBR1-206ENST00000566493 EIF4G3O43432 1585 aaKnown RBP21.66■■□□□ 1.06
UBR1-206ENST00000566493 TARBP1Q13395 1621 aaKnown RBP21.62■■□□□ 1.05
UBR1-206ENST00000566493 POLA1P09884 1462 aaPredicted RBP21.61■■□□□ 1.05
UBR1-206ENST00000566493 AQRO60306 1485 aaKnown RBP eCLIP21.6■■□□□ 1.05
UBR1-206ENST00000566493 SOGA1O94964 1423 aa21.55■■□□□ 1.04
UBR1-206ENST00000566493 SUPT5HO00267 1087 aaKnown RBP21.54■■□□□ 1.04
UBR1-206ENST00000566493 RIMBP3CA6NJZ7 1639 aa21.54■■□□□ 1.04
UBR1-206ENST00000566493 RIMBP3BA6NNM3 1639 aa21.54■■□□□ 1.04
UBR1-206ENST00000566493 RIMBP3Q9UFD9 1639 aa21.54■■□□□ 1.04
UBR1-206ENST00000566493 RAD54L2Q9Y4B4 1467 aa21.53■■□□□ 1.04
UBR1-206ENST00000566493 FBLN2P98095 1184 aa21.51■■□□□ 1.03
UBR1-206ENST00000566493 CHD1O14646 1710 aa21.51■■□□□ 1.03
UBR1-206ENST00000566493 FGD5Q6ZNL6 1462 aa21.5■■□□□ 1.03
UBR1-206ENST00000566493 TDRD9Q8NDG6 1382 aaKnown RBP21.48■■□□□ 1.03
UBR1-206ENST00000566493 CUX1P39880 1505 aa21.47■■□□□ 1.03
UBR1-206ENST00000566493 ARHGEF11O15085 1522 aa21.46■■□□□ 1.03
UBR1-206ENST00000566493 WDR97A6NE52 1622 aa21.45■■□□□ 1.02
UBR1-206ENST00000566493 SNAPC4Q5SXM2 1469 aa21.39■■□□□ 1.01
UBR1-206ENST00000566493 CYB5RLQ6IPT4 315 aa21.36■■□□□ 1.01
UBR1-206ENST00000566493 CHMP7Q8WUX9 453 aaPredicted RBP21.36■■□□□ 1.01
UBR1-206ENST00000566493 GRIN2BQ13224 1484 aa21.35■■□□□ 1.01
UBR1-206ENST00000566493 MAGI1Q96QZ7 1491 aaPredicted RBP21.34■■□□□ 1.01
UBR1-206ENST00000566493 PLPPR3Q6T4P5 718 aa21.33■■□□□ 1.01
UBR1-206ENST00000566493 GAPVD1Q14C86 1478 aa21.28■■□□□ 1
UBR1-206ENST00000566493 SYNJ1O43426 1573 aa21.27■■□□□ 1
UBR1-206ENST00000566493 PBRM1Q86U86 1689 aa21.27■■□□□ 1
UBR1-206ENST00000566493 SYNJ2O15056 1496 aa21.26■□□□□ 0.99
UBR1-206ENST00000566493 ARAP1Q96P48 1450 aa21.25■□□□□ 0.99
UBR1-206ENST00000566493 ABCA10Q8WWZ4 1543 aa21.24■□□□□ 0.99
UBR1-206ENST00000566493 CLASP1Q7Z460 1538 aa21.23■□□□□ 0.99
UBR1-206ENST00000566493 WRNQ14191 1432 aaPredicted RBP eCLIP21.21■□□□□ 0.99
UBR1-206ENST00000566493 ABCA5Q8WWZ7 1642 aa21.21■□□□□ 0.99
UBR1-206ENST00000566493 TOP2BQ02880 1626 aa21.16■□□□□ 0.98
UBR1-206ENST00000566493 BIVM-ERCC5R4GMW8 1640 aa21.16■□□□□ 0.98
UBR1-206ENST00000566493 TRHP20396 242 aaPredicted RBP21.14■□□□□ 0.97
UBR1-206ENST00000566493 GRIN2AQ12879 1464 aa21.06■□□□□ 0.96
UBR1-206ENST00000566493 ADAMTS12P58397 1594 aa21.05■□□□□ 0.96
UBR1-206ENST00000566493 FHAD1B1AJZ9 1412 aa21.01■□□□□ 0.95
UBR1-206ENST00000566493 ERICH3Q5RHP9 1530 aa21■□□□□ 0.95
UBR1-206ENST00000566493 NUP160Q12769 1436 aa20.97■□□□□ 0.95
UBR1-206ENST00000566493 CEP170Q5SW79 1584 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms