RNA–Protein interactions for RNA: ENST00000564890.1

PKD1-229, Transcript of polycystin 1, transient receptor potential channel interacting, humanhuman

TSL 5

Gene PKD1, Length 574 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKD1-229ENST00000564890 NISCHQ9Y2I1 1504 aa45.16■■■■■ 4.82
PKD1-229ENST00000564890 CCDC180Q9P1Z9 1646 aa40.12■■■■■ 4.01
PKD1-229ENST00000564890 ABCC9O60706 1549 aa39.3■■■■□ 3.88
PKD1-229ENST00000564890 RB1CC1Q8TDY2 1594 aa37.78■■■■□ 3.64
PKD1-229ENST00000564890 DCAF8L2P0C7V8 631 aa37.77■■■■□ 3.64
PKD1-229ENST00000564890 NACADO15069 1562 aa37.73■■■■□ 3.63
PKD1-229ENST00000564890 ZCCHC6Q5VYS8 1495 aaKnown RBP37.62■■■■□ 3.61
PKD1-229ENST00000564890 MYO15BQ96JP2 1530 aa37.49■■■■□ 3.59
PKD1-229ENST00000564890 DCAF1Q9Y4B6 1507 aa37.34■■■■□ 3.57
PKD1-229ENST00000564890 UNC13AQ9UPW8 1703 aa36.9■■■■□ 3.5
PKD1-229ENST00000564890 PABPN1Q86U42 306 aaKnown RBP eCLIP36.75■■■■□ 3.47
PKD1-229ENST00000564890 SCRIBQ14160 1630 aa36.65■■■■□ 3.46
PKD1-229ENST00000564890 BICRAQ9NZM4 1560 aa36.64■■■■□ 3.46
PKD1-229ENST00000564890 SHROOM4Q9ULL8 1493 aa36.23■■■■□ 3.39
PKD1-229ENST00000564890 DNAJC5BQ9UF47 199 aa36.07■■■■□ 3.36
PKD1-229ENST00000564890 EIF4G1Q04637 1599 aaKnown RBP35.68■■■■□ 3.3
PKD1-229ENST00000564890 CC2D2AQ9P2K1 1620 aa35.53■■■■□ 3.28
PKD1-229ENST00000564890 CECR2Q9BXF3 1484 aa35.3■■■■□ 3.24
PKD1-229ENST00000564890 SMARCA4P51532 1647 aa35.03■■■■□ 3.2
PKD1-229ENST00000564890 BAZ1AQ9NRL2 1556 aaPredicted RBP34.99■■■■□ 3.19
PKD1-229ENST00000564890 ATAD2BQ9ULI0 1458 aa34.85■■■■□ 3.17
PKD1-229ENST00000564890 NCAPD3P42695 1498 aa34.82■■■■□ 3.16
PKD1-229ENST00000564890 MROH2BQ7Z745 1585 aa34.81■■■■□ 3.16
PKD1-229ENST00000564890 SMARCA2P51531 1590 aa34.8■■■■□ 3.16
PKD1-229ENST00000564890 PEG3Q9GZU2 1588 aa34.67■■■■□ 3.14
PKD1-229ENST00000564890 HMGXB3Q12766 1538 aa34.65■■■■□ 3.14
PKD1-229ENST00000564890 BAZ1BQ9UIG0 1483 aaKnown RBP34.58■■■■□ 3.13
PKD1-229ENST00000564890 WIZO95785 1651 aa34.43■■■■□ 3.1
PKD1-229ENST00000564890 RSF1Q96T23 1441 aaPredicted RBP34.41■■■■□ 3.1
PKD1-229ENST00000564890 TOP2AP11388 1531 aaKnown RBP34.07■■■■□ 3.04
PKD1-229ENST00000564890 NESP48681 1621 aa34.01■■■■□ 3.04
PKD1-229ENST00000564890 LAMC3Q9Y6N6 1575 aa33.89■■■■□ 3.02
PKD1-229ENST00000564890 ERCC6Q03468 1493 aa33.88■■■■□ 3.01
PKD1-229ENST00000564890 CADPSQ9ULU8 1353 aa33.82■■■■□ 3
PKD1-229ENST00000564890 PDS5BQ9NTI5 1447 aa33.69■■■□□ 2.98
PKD1-229ENST00000564890 CCDC88BA6NC98 1476 aa33.67■■■□□ 2.98
PKD1-229ENST00000564890 CFTRP13569 1480 aa33.61■■■□□ 2.97
PKD1-229ENST00000564890 KIF21AQ7Z4S6 1674 aa33.58■■■□□ 2.97
PKD1-229ENST00000564890 SUPT5HO00267 1087 aaKnown RBP33.58■■■□□ 2.97
PKD1-229ENST00000564890 CUX2O14529 1486 aa33.5■■■□□ 2.95
PKD1-229ENST00000564890 THOC2Q8NI27 1593 aaKnown RBP33.47■■■□□ 2.95
PKD1-229ENST00000564890 FANCD2Q9BXW9 1451 aa33.44■■■□□ 2.94
PKD1-229ENST00000564890 CEP164Q9UPV0 1460 aa33.4■■■□□ 2.94
PKD1-229ENST00000564890 MRC2Q9UBG0 1479 aa33.35■■■□□ 2.93
PKD1-229ENST00000564890 PRDM2Q13029 1718 aa33.33■■■□□ 2.93
PKD1-229ENST00000564890 WDR62O43379 1518 aa33.23■■■□□ 2.91
PKD1-229ENST00000564890 URB2Q14146 1524 aaKnown RBP33.11■■■□□ 2.89
PKD1-229ENST00000564890 TOPBP1Q92547 1522 aa32.9■■■□□ 2.86
PKD1-229ENST00000564890 ABCC8Q09428 1581 aa32.87■■■□□ 2.85
PKD1-229ENST00000564890 DNMBPQ6XZF7 1577 aa32.86■■■□□ 2.85
PKD1-229ENST00000564890 IFT140Q96RY7 1462 aa32.69■■■□□ 2.82
PKD1-229ENST00000564890 CUX1P39880 1505 aa32.67■■■□□ 2.82
PKD1-229ENST00000564890 POLA1P09884 1462 aaPredicted RBP32.62■■■□□ 2.81
PKD1-229ENST00000564890 ZNF608Q9ULD9 1512 aaPredicted RBP32.56■■■□□ 2.8
PKD1-229ENST00000564890 FGD5Q6ZNL6 1462 aa32.54■■■□□ 2.8
PKD1-229ENST00000564890 TARBP1Q13395 1621 aaKnown RBP32.53■■■□□ 2.8
PKD1-229ENST00000564890 SOGA1O94964 1423 aa32.5■■■□□ 2.79
PKD1-229ENST00000564890 RAD54L2Q9Y4B4 1467 aa32.49■■■□□ 2.79
PKD1-229ENST00000564890 DNAJC5Q9H3Z4 198 aa32.47■■■□□ 2.79
PKD1-229ENST00000564890 WRNQ14191 1432 aaPredicted RBP eCLIP32.45■■■□□ 2.79
PKD1-229ENST00000564890 EIF4G3O43432 1585 aaKnown RBP32.41■■■□□ 2.78
PKD1-229ENST00000564890 AQRO60306 1485 aaKnown RBP eCLIP32.38■■■□□ 2.77
PKD1-229ENST00000564890 TOP2BQ02880 1626 aa32.37■■■□□ 2.77
PKD1-229ENST00000564890 SYNJ1O43426 1573 aa32.36■■■□□ 2.77
PKD1-229ENST00000564890 BIVM-ERCC5R4GMW8 1640 aa32.35■■■□□ 2.77
PKD1-229ENST00000564890 TDRD9Q8NDG6 1382 aaKnown RBP32.32■■■□□ 2.77
PKD1-229ENST00000564890 WDR97A6NE52 1622 aa32.26■■■□□ 2.75
PKD1-229ENST00000564890 ABCA10Q8WWZ4 1543 aa32.22■■■□□ 2.75
PKD1-229ENST00000564890 GAPVD1Q14C86 1478 aa32.12■■■□□ 2.73
PKD1-229ENST00000564890 OSCARQ8IYS5 282 aa32.12■■■□□ 2.73
PKD1-229ENST00000564890 GRIN2BQ13224 1484 aa32.11■■■□□ 2.73
PKD1-229ENST00000564890 ABCA5Q8WWZ7 1642 aa32.09■■■□□ 2.73
PKD1-229ENST00000564890 SNAPC4Q5SXM2 1469 aa32.08■■■□□ 2.73
PKD1-229ENST00000564890 PBRM1Q86U86 1689 aa32.03■■■□□ 2.72
PKD1-229ENST00000564890 MAGI1Q96QZ7 1491 aaPredicted RBP32.02■■■□□ 2.72
PKD1-229ENST00000564890 FBLN2P98095 1184 aa32.01■■■□□ 2.71
PKD1-229ENST00000564890 CHD1O14646 1710 aa32■■■□□ 2.71
PKD1-229ENST00000564890 CHMP7Q8WUX9 453 aaPredicted RBP31.91■■■□□ 2.7
PKD1-229ENST00000564890 SYNJ2O15056 1496 aa31.9■■■□□ 2.7
PKD1-229ENST00000564890 ERICH3Q5RHP9 1530 aa31.83■■■□□ 2.69
PKD1-229ENST00000564890 ADAMTS12P58397 1594 aa31.79■■■□□ 2.68
PKD1-229ENST00000564890 KIF27Q86VH2 1401 aa31.77■■■□□ 2.68
PKD1-229ENST00000564890 FHAD1B1AJZ9 1412 aa31.75■■■□□ 2.67
PKD1-229ENST00000564890 TRIM41Q8WV44 630 aa31.7■■■□□ 2.67
PKD1-229ENST00000564890 GRIN2AQ12879 1464 aa31.7■■■□□ 2.66
PKD1-229ENST00000564890 CLASP1Q7Z460 1538 aa31.65■■■□□ 2.66
PKD1-229ENST00000564890 IGF1RP08069 1367 aa31.64■■■□□ 2.66
PKD1-229ENST00000564890 RIMBP3CA6NJZ7 1639 aa31.6■■■□□ 2.65
PKD1-229ENST00000564890 RIMBP3BA6NNM3 1639 aa31.6■■■□□ 2.65
PKD1-229ENST00000564890 RIMBP3Q9UFD9 1639 aa31.6■■■□□ 2.65
PKD1-229ENST00000564890 ARHGEF11O15085 1522 aa31.6■■■□□ 2.65
PKD1-229ENST00000564890 NUP160Q12769 1436 aa31.55■■■□□ 2.64
PKD1-229ENST00000564890 CEP170Q5SW79 1584 aa31.55■■■□□ 2.64
PKD1-229ENST00000564890 CUL7Q14999 1698 aa31.54■■■□□ 2.64
PKD1-229ENST00000564890 RUSC2Q8N2Y8 1516 aa31.49■■■□□ 2.63
PKD1-229ENST00000564890 CARMIL1Q5VZK9 1371 aa31.46■■■□□ 2.63
PKD1-229ENST00000564890 ARAP1Q96P48 1450 aa31.35■■■□□ 2.61
PKD1-229ENST00000564890 CYB5RLQ6IPT4 315 aa31.33■■■□□ 2.61
PKD1-229ENST00000564890 CHIC1Q5VXU3 224 aa31.32■■■□□ 2.6
PKD1-229ENST00000564890 SHROOM2Q13796 1616 aa31.3■■■□□ 2.6
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms