RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 NISCHQ9Y2I1 1504 aa18.64■□□□□ 0.58
VPS4A-203ENST00000564399 ABCC9O60706 1549 aa17.2■□□□□ 0.34
VPS4A-203ENST00000564399 CCDC180Q9P1Z9 1646 aa16.85■□□□□ 0.29
VPS4A-203ENST00000564399 DNAJC5BQ9UF47 199 aa16.39■□□□□ 0.21
VPS4A-203ENST00000564399 RB1CC1Q8TDY2 1594 aa16.21■□□□□ 0.19
VPS4A-203ENST00000564399 NACADO15069 1562 aa16.01■□□□□ 0.15
VPS4A-203ENST00000564399 DCAF8L2P0C7V8 631 aa16■□□□□ 0.15
VPS4A-203ENST00000564399 PABPN1Q86U42 306 aaKnown RBP eCLIP15.99■□□□□ 0.15
VPS4A-203ENST00000564399 UNC13AQ9UPW8 1703 aa15.85■□□□□ 0.13
VPS4A-203ENST00000564399 BICRAQ9NZM4 1560 aa15.72■□□□□ 0.11
VPS4A-203ENST00000564399 MYO15BQ96JP2 1530 aa15.65■□□□□ 0.1
VPS4A-203ENST00000564399 CECR2Q9BXF3 1484 aa15.52■□□□□ 0.07
VPS4A-203ENST00000564399 CC2D2AQ9P2K1 1620 aa15.5■□□□□ 0.07
VPS4A-203ENST00000564399 SHROOM4Q9ULL8 1493 aa15.46■□□□□ 0.06
VPS4A-203ENST00000564399 SCRIBQ14160 1630 aa15.38■□□□□ 0.05
VPS4A-203ENST00000564399 EIF4G1Q04637 1599 aaKnown RBP15.37■□□□□ 0.05
VPS4A-203ENST00000564399 ZCCHC6Q5VYS8 1495 aaKnown RBP15.36■□□□□ 0.05
VPS4A-203ENST00000564399 DCAF1Q9Y4B6 1507 aa15.34■□□□□ 0.05
VPS4A-203ENST00000564399 DNAJC5Q9H3Z4 198 aa15.28■□□□□ 0.04
VPS4A-203ENST00000564399 CUX2O14529 1486 aa14.91□□□□□ -0.02
VPS4A-203ENST00000564399 ERCC6Q03468 1493 aa14.89□□□□□ -0.03
VPS4A-203ENST00000564399 NCAPD3P42695 1498 aa14.78□□□□□ -0.04
VPS4A-203ENST00000564399 ATAD2BQ9ULI0 1458 aa14.7□□□□□ -0.06
VPS4A-203ENST00000564399 NESP48681 1621 aa14.68□□□□□ -0.06
VPS4A-203ENST00000564399 SMARCA2P51531 1590 aa14.65□□□□□ -0.06
VPS4A-203ENST00000564399 HMGXB3Q12766 1538 aa14.63□□□□□ -0.07
VPS4A-203ENST00000564399 SMARCA4P51532 1647 aa14.61□□□□□ -0.07
VPS4A-203ENST00000564399 BAZ1BQ9UIG0 1483 aaKnown RBP14.57□□□□□ -0.08
VPS4A-203ENST00000564399 TRIM41Q8WV44 630 aa14.55□□□□□ -0.08
VPS4A-203ENST00000564399 THOC2Q8NI27 1593 aaKnown RBP14.55□□□□□ -0.08
VPS4A-203ENST00000564399 LAMC3Q9Y6N6 1575 aa14.51□□□□□ -0.09
VPS4A-203ENST00000564399 BAZ1AQ9NRL2 1556 aaPredicted RBP14.5□□□□□ -0.09
VPS4A-203ENST00000564399 KIF21AQ7Z4S6 1674 aa14.48□□□□□ -0.09
VPS4A-203ENST00000564399 PDS5BQ9NTI5 1447 aa14.46□□□□□ -0.09
VPS4A-203ENST00000564399 PEG3Q9GZU2 1588 aa14.43□□□□□ -0.1
VPS4A-203ENST00000564399 MROH2BQ7Z745 1585 aa14.37□□□□□ -0.11
VPS4A-203ENST00000564399 CADPSQ9ULU8 1353 aa14.34□□□□□ -0.11
VPS4A-203ENST00000564399 MRC2Q9UBG0 1479 aa14.33□□□□□ -0.12
VPS4A-203ENST00000564399 WDR62O43379 1518 aa14.29□□□□□ -0.12
VPS4A-203ENST00000564399 OSCARQ8IYS5 282 aa14.24□□□□□ -0.13
VPS4A-203ENST00000564399 CEP164Q9UPV0 1460 aa14.23□□□□□ -0.13
VPS4A-203ENST00000564399 WIZO95785 1651 aa14.2□□□□□ -0.14
VPS4A-203ENST00000564399 FANCD2Q9BXW9 1451 aa14.18□□□□□ -0.14
VPS4A-203ENST00000564399 CFTRP13569 1480 aa14.09□□□□□ -0.15
VPS4A-203ENST00000564399 URB2Q14146 1524 aaKnown RBP14.07□□□□□ -0.16
VPS4A-203ENST00000564399 RIMBP3CA6NJZ7 1639 aa14.05□□□□□ -0.16
VPS4A-203ENST00000564399 RIMBP3BA6NNM3 1639 aa14.05□□□□□ -0.16
VPS4A-203ENST00000564399 RIMBP3Q9UFD9 1639 aa14.05□□□□□ -0.16
VPS4A-203ENST00000564399 AEBP2Q6ZN18 517 aaPredicted RBP13.99□□□□□ -0.17
VPS4A-203ENST00000564399 ARHGEF11O15085 1522 aa13.97□□□□□ -0.17
VPS4A-203ENST00000564399 TOP2AP11388 1531 aaKnown RBP13.97□□□□□ -0.17
VPS4A-203ENST00000564399 RSF1Q96T23 1441 aaPredicted RBP13.96□□□□□ -0.18
VPS4A-203ENST00000564399 ZNF608Q9ULD9 1512 aaPredicted RBP13.95□□□□□ -0.18
VPS4A-203ENST00000564399 CYB5RLQ6IPT4 315 aa13.95□□□□□ -0.18
VPS4A-203ENST00000564399 PRDM2Q13029 1718 aa13.95□□□□□ -0.18
VPS4A-203ENST00000564399 IFT140Q96RY7 1462 aa13.94□□□□□ -0.18
VPS4A-203ENST00000564399 TRHP20396 242 aaPredicted RBP13.92□□□□□ -0.18
VPS4A-203ENST00000564399 TOPBP1Q92547 1522 aa13.88□□□□□ -0.19
VPS4A-203ENST00000564399 EIF4G3O43432 1585 aaKnown RBP13.85□□□□□ -0.19
VPS4A-203ENST00000564399 FBLN2P98095 1184 aa13.85□□□□□ -0.19
VPS4A-203ENST00000564399 CHD1O14646 1710 aa13.84□□□□□ -0.19
VPS4A-203ENST00000564399 CCDC88BA6NC98 1476 aa13.84□□□□□ -0.19
VPS4A-203ENST00000564399 ABCC8Q09428 1581 aa13.83□□□□□ -0.2
VPS4A-203ENST00000564399 AQRO60306 1485 aaKnown RBP eCLIP13.81□□□□□ -0.21e-8■■■■■ 71.2
VPS4A-203ENST00000564399 ARAP1Q96P48 1450 aa13.8□□□□□ -0.2
VPS4A-203ENST00000564399 DNMBPQ6XZF7 1577 aa13.79□□□□□ -0.2
VPS4A-203ENST00000564399 TARBP1Q13395 1621 aaKnown RBP13.75□□□□□ -0.21
VPS4A-203ENST00000564399 POLA1P09884 1462 aaPredicted RBP13.71□□□□□ -0.21
VPS4A-203ENST00000564399 TDRD9Q8NDG6 1382 aaKnown RBP13.7□□□□□ -0.22
VPS4A-203ENST00000564399 RAD54L2Q9Y4B4 1467 aa13.68□□□□□ -0.22
VPS4A-203ENST00000564399 SOGA1O94964 1423 aa13.67□□□□□ -0.22
VPS4A-203ENST00000564399 CHMP7Q8WUX9 453 aaPredicted RBP13.67□□□□□ -0.22
VPS4A-203ENST00000564399 SNAPC4Q5SXM2 1469 aa13.65□□□□□ -0.22
VPS4A-203ENST00000564399 SYNJ1O43426 1573 aa13.63□□□□□ -0.23
VPS4A-203ENST00000564399 CLASP1Q7Z460 1538 aa13.62□□□□□ -0.23
VPS4A-203ENST00000564399 FGD5Q6ZNL6 1462 aa13.59□□□□□ -0.23
VPS4A-203ENST00000564399 MAGI1Q96QZ7 1491 aaPredicted RBP13.59□□□□□ -0.23
VPS4A-203ENST00000564399 WDR97A6NE52 1622 aa13.58□□□□□ -0.24
VPS4A-203ENST00000564399 GRIN2BQ13224 1484 aa13.57□□□□□ -0.24
VPS4A-203ENST00000564399 CHIC1Q5VXU3 224 aa13.56□□□□□ -0.24
VPS4A-203ENST00000564399 SYNJ2O15056 1496 aa13.55□□□□□ -0.24
VPS4A-203ENST00000564399 GAPVD1Q14C86 1478 aa13.55□□□□□ -0.24
VPS4A-203ENST00000564399 CUX1P39880 1505 aa13.51□□□□□ -0.25
VPS4A-203ENST00000564399 PBRM1Q86U86 1689 aa13.5□□□□□ -0.25
VPS4A-203ENST00000564399 ERCC6L2Q5T890 1561 aa13.41□□□□□ -0.26
VPS4A-203ENST00000564399 ABCA10Q8WWZ4 1543 aa13.4□□□□□ -0.26
VPS4A-203ENST00000564399 ABCA5Q8WWZ7 1642 aa13.4□□□□□ -0.26
VPS4A-203ENST00000564399 GRIN2AQ12879 1464 aa13.38□□□□□ -0.27
VPS4A-203ENST00000564399 CEP170Q5SW79 1584 aa13.37□□□□□ -0.27
VPS4A-203ENST00000564399 KIF13AQ9H1H9 1805 aa13.34□□□□□ -0.27
VPS4A-203ENST00000564399 NUP160Q12769 1436 aa13.33□□□□□ -0.28
VPS4A-203ENST00000564399 ADAMTS12P58397 1594 aa13.32□□□□□ -0.28
VPS4A-203ENST00000564399 WRNQ14191 1432 aaPredicted RBP eCLIP13.31□□□□□ -0.28
VPS4A-203ENST00000564399 SHROOM2Q13796 1616 aa13.31□□□□□ -0.28
VPS4A-203ENST00000564399 FHAD1B1AJZ9 1412 aa13.3□□□□□ -0.28
VPS4A-203ENST00000564399 FAM69CQ0P6D2 419 aa13.28□□□□□ -0.28
VPS4A-203ENST00000564399 ILDR1Q86SU0 546 aaPredicted RBP13.28□□□□□ -0.28
VPS4A-203ENST00000564399 PRG4Q92954 1404 aaPredicted RBP13.28□□□□□ -0.28
VPS4A-203ENST00000564399 NPM1P06748 294 aaKnown RBP eCLIP13.27□□□□□ -0.29
VPS4A-203ENST00000564399 JPH4Q96JJ6 628 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms