RNA–Protein interactions for RNA: ENST00000563945.1

HERC2-204, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 2, humanhuman

TSL 1 (best)

Gene HERC2, Length 491 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC2-204ENST00000563945 NISCHQ9Y2I1 1504 aa52.15■■■■■ 5.94
HERC2-204ENST00000563945 ABCC9O60706 1549 aa47.05■■■■■ 5.12
HERC2-204ENST00000563945 CCDC180Q9P1Z9 1646 aa46.8■■■■■ 5.08
HERC2-204ENST00000563945 RB1CC1Q8TDY2 1594 aa44.71■■■■■ 4.75
HERC2-204ENST00000563945 DCAF8L2P0C7V8 631 aa44.39■■■■■ 4.7
HERC2-204ENST00000563945 NACADO15069 1562 aa44.35■■■■■ 4.69
HERC2-204ENST00000563945 DNAJC5BQ9UF47 199 aa44.21■■■■■ 4.67
HERC2-204ENST00000563945 PABPN1Q86U42 306 aaKnown RBP eCLIP43.86■■■■■ 4.61
HERC2-204ENST00000563945 MYO15BQ96JP2 1530 aa43.64■■■■■ 4.58
HERC2-204ENST00000563945 UNC13AQ9UPW8 1703 aa43.53■■■■■ 4.56
HERC2-204ENST00000563945 BICRAQ9NZM4 1560 aa43.28■■■■■ 4.52
HERC2-204ENST00000563945 ZCCHC6Q5VYS8 1495 aaKnown RBP43.15■■■■■ 4.5
HERC2-204ENST00000563945 DCAF1Q9Y4B6 1507 aa43.04■■■■■ 4.48
HERC2-204ENST00000563945 SHROOM4Q9ULL8 1493 aa42.77■■■■■ 4.44
HERC2-204ENST00000563945 SCRIBQ14160 1630 aa42.7■■■■■ 4.43
HERC2-204ENST00000563945 CC2D2AQ9P2K1 1620 aa42.42■■■■■ 4.38
HERC2-204ENST00000563945 CECR2Q9BXF3 1484 aa42.4■■■■■ 4.38
HERC2-204ENST00000563945 EIF4G1Q04637 1599 aaKnown RBP42.31■■■■■ 4.36
HERC2-204ENST00000563945 NCAPD3P42695 1498 aa40.95■■■■■ 4.15
HERC2-204ENST00000563945 ATAD2BQ9ULI0 1458 aa40.8■■■■■ 4.12
HERC2-204ENST00000563945 DNAJC5Q9H3Z4 198 aa40.79■■■■■ 4.12
HERC2-204ENST00000563945 ERCC6Q03468 1493 aa40.72■■■■■ 4.11
HERC2-204ENST00000563945 SMARCA2P51531 1590 aa40.71■■■■■ 4.11
HERC2-204ENST00000563945 SMARCA4P51532 1647 aa40.68■■■■■ 4.1
HERC2-204ENST00000563945 CUX2O14529 1486 aa40.59■■■■■ 4.09
HERC2-204ENST00000563945 HMGXB3Q12766 1538 aa40.59■■■■■ 4.09
HERC2-204ENST00000563945 BAZ1AQ9NRL2 1556 aaPredicted RBP40.52■■■■■ 4.08
HERC2-204ENST00000563945 BAZ1BQ9UIG0 1483 aaKnown RBP40.45■■■■■ 4.07
HERC2-204ENST00000563945 NESP48681 1621 aa40.32■■■■■ 4.05
HERC2-204ENST00000563945 PEG3Q9GZU2 1588 aa40.25■■■■■ 4.03
HERC2-204ENST00000563945 MROH2BQ7Z745 1585 aa40.17■■■■■ 4.02
HERC2-204ENST00000563945 LAMC3Q9Y6N6 1575 aa40.05■■■■■ 4
HERC2-204ENST00000563945 PDS5BQ9NTI5 1447 aa39.92■■■■□ 3.98
HERC2-204ENST00000563945 THOC2Q8NI27 1593 aaKnown RBP39.86■■■■□ 3.97
HERC2-204ENST00000563945 CADPSQ9ULU8 1353 aa39.75■■■■□ 3.95
HERC2-204ENST00000563945 KIF21AQ7Z4S6 1674 aa39.75■■■■□ 3.95
HERC2-204ENST00000563945 WIZO95785 1651 aa39.67■■■■□ 3.94
HERC2-204ENST00000563945 MRC2Q9UBG0 1479 aa39.5■■■■□ 3.91
HERC2-204ENST00000563945 CEP164Q9UPV0 1460 aa39.35■■■■□ 3.89
HERC2-204ENST00000563945 WDR62O43379 1518 aa39.34■■■■□ 3.89
HERC2-204ENST00000563945 RSF1Q96T23 1441 aaPredicted RBP39.32■■■■□ 3.89
HERC2-204ENST00000563945 FANCD2Q9BXW9 1451 aa39.29■■■■□ 3.88
HERC2-204ENST00000563945 CFTRP13569 1480 aa39.21■■■■□ 3.87
HERC2-204ENST00000563945 TOP2AP11388 1531 aaKnown RBP39.18■■■■□ 3.86
HERC2-204ENST00000563945 TRIM41Q8WV44 630 aa39.05■■■■□ 3.84
HERC2-204ENST00000563945 URB2Q14146 1524 aaKnown RBP38.9■■■■□ 3.82
HERC2-204ENST00000563945 OSCARQ8IYS5 282 aa38.88■■■■□ 3.81
HERC2-204ENST00000563945 CCDC88BA6NC98 1476 aa38.77■■■■□ 3.8
HERC2-204ENST00000563945 PRDM2Q13029 1718 aa38.72■■■■□ 3.79
HERC2-204ENST00000563945 IFT140Q96RY7 1462 aa38.57■■■■□ 3.76
HERC2-204ENST00000563945 ABCC8Q09428 1581 aa38.49■■■■□ 3.75
HERC2-204ENST00000563945 TOPBP1Q92547 1522 aa38.49■■■■□ 3.75
HERC2-204ENST00000563945 ZNF608Q9ULD9 1512 aaPredicted RBP38.46■■■■□ 3.75
HERC2-204ENST00000563945 DNMBPQ6XZF7 1577 aa38.33■■■■□ 3.73
HERC2-204ENST00000563945 EIF4G3O43432 1585 aaKnown RBP38.2■■■■□ 3.71
HERC2-204ENST00000563945 RIMBP3CA6NJZ7 1639 aa38.18■■■■□ 3.7
HERC2-204ENST00000563945 RIMBP3BA6NNM3 1639 aa38.18■■■■□ 3.7
HERC2-204ENST00000563945 RIMBP3Q9UFD9 1639 aa38.18■■■■□ 3.7
HERC2-204ENST00000563945 AQRO60306 1485 aaKnown RBP eCLIP38.15■■■■□ 3.7
HERC2-204ENST00000563945 FBLN2P98095 1184 aa38.11■■■■□ 3.69
HERC2-204ENST00000563945 TARBP1Q13395 1621 aaKnown RBP38.09■■■■□ 3.69
HERC2-204ENST00000563945 POLA1P09884 1462 aaPredicted RBP38.08■■■■□ 3.69
HERC2-204ENST00000563945 ARHGEF11O15085 1522 aa38.07■■■■□ 3.69
HERC2-204ENST00000563945 SOGA1O94964 1423 aa38.01■■■■□ 3.68
HERC2-204ENST00000563945 RAD54L2Q9Y4B4 1467 aa37.97■■■■□ 3.67
HERC2-204ENST00000563945 CYB5RLQ6IPT4 315 aa37.97■■■■□ 3.67
HERC2-204ENST00000563945 CHD1O14646 1710 aa37.95■■■■□ 3.67
HERC2-204ENST00000563945 TDRD9Q8NDG6 1382 aaKnown RBP37.94■■■■□ 3.66
HERC2-204ENST00000563945 FGD5Q6ZNL6 1462 aa37.84■■■■□ 3.65
HERC2-204ENST00000563945 CHMP7Q8WUX9 453 aaPredicted RBP37.79■■■■□ 3.64
HERC2-204ENST00000563945 WDR97A6NE52 1622 aa37.74■■■■□ 3.63
HERC2-204ENST00000563945 CUX1P39880 1505 aa37.74■■■■□ 3.63
HERC2-204ENST00000563945 SNAPC4Q5SXM2 1469 aa37.74■■■■□ 3.63
HERC2-204ENST00000563945 SUPT5HO00267 1087 aaKnown RBP37.7■■■■□ 3.63
HERC2-204ENST00000563945 TRHP20396 242 aaPredicted RBP37.68■■■■□ 3.62
HERC2-204ENST00000563945 ARAP1Q96P48 1450 aa37.67■■■■□ 3.62
HERC2-204ENST00000563945 GRIN2BQ13224 1484 aa37.66■■■■□ 3.62
HERC2-204ENST00000563945 MAGI1Q96QZ7 1491 aaPredicted RBP37.64■■■■□ 3.62
HERC2-204ENST00000563945 SYNJ1O43426 1573 aa37.57■■■■□ 3.6
HERC2-204ENST00000563945 SYNJ2O15056 1496 aa37.52■■■■□ 3.6
HERC2-204ENST00000563945 GAPVD1Q14C86 1478 aa37.51■■■■□ 3.59
HERC2-204ENST00000563945 CLASP1Q7Z460 1538 aa37.49■■■■□ 3.59
HERC2-204ENST00000563945 PBRM1Q86U86 1689 aa37.39■■■■□ 3.58
HERC2-204ENST00000563945 ABCA10Q8WWZ4 1543 aa37.39■■■■□ 3.58
HERC2-204ENST00000563945 WRNQ14191 1432 aaPredicted RBP eCLIP37.31■■■■□ 3.56
HERC2-204ENST00000563945 ABCA5Q8WWZ7 1642 aa37.28■■■■□ 3.56
HERC2-204ENST00000563945 GRIN2AQ12879 1464 aa37.13■■■■□ 3.54
HERC2-204ENST00000563945 TOP2BQ02880 1626 aa37.11■■■■□ 3.53
HERC2-204ENST00000563945 BIVM-ERCC5R4GMW8 1640 aa37.08■■■■□ 3.53
HERC2-204ENST00000563945 FHAD1B1AJZ9 1412 aa37.04■■■■□ 3.52
HERC2-204ENST00000563945 ADAMTS12P58397 1594 aa37.03■■■■□ 3.52
HERC2-204ENST00000563945 NUP160Q12769 1436 aa36.98■■■■□ 3.51
HERC2-204ENST00000563945 CEP170Q5SW79 1584 aa36.94■■■■□ 3.5
HERC2-204ENST00000563945 ERICH3Q5RHP9 1530 aa36.94■■■■□ 3.5
HERC2-204ENST00000563945 ERCC6L2Q5T890 1561 aa36.9■■■■□ 3.5
HERC2-204ENST00000563945 SHROOM2Q13796 1616 aa36.77■■■■□ 3.48
HERC2-204ENST00000563945 JPH4Q96JJ6 628 aa36.76■■■■□ 3.48
HERC2-204ENST00000563945 PRG4Q92954 1404 aaPredicted RBP36.74■■■■□ 3.47
HERC2-204ENST00000563945 AEBP2Q6ZN18 517 aaPredicted RBP36.73■■■■□ 3.47
HERC2-204ENST00000563945 NPM1P06748 294 aaKnown RBP eCLIP36.58■■■■□ 3.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms