RNA–Protein interactions for RNA: ENST00000563455.1

SMPD3-205, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-205ENST00000563455 NISCHQ9Y2I1 1504 aa31.31■■■□□ 2.6
SMPD3-205ENST00000563455 ABCC9O60706 1549 aa28.02■■■□□ 2.08
SMPD3-205ENST00000563455 CCDC180Q9P1Z9 1646 aa28.01■■■□□ 2.07
SMPD3-205ENST00000563455 RB1CC1Q8TDY2 1594 aa26.74■■□□□ 1.87
SMPD3-205ENST00000563455 DCAF8L2P0C7V8 631 aa26.6■■□□□ 1.85
SMPD3-205ENST00000563455 NACADO15069 1562 aa26.58■■□□□ 1.85
SMPD3-205ENST00000563455 MYO15BQ96JP2 1530 aa26.27■■□□□ 1.8
SMPD3-205ENST00000563455 DNAJC5BQ9UF47 199 aa26.25■■□□□ 1.79
SMPD3-205ENST00000563455 PABPN1Q86U42 306 aaKnown RBP eCLIP26.17■■□□□ 1.78
SMPD3-205ENST00000563455 ZCCHC6Q5VYS8 1495 aaKnown RBP26.09■■□□□ 1.77
SMPD3-205ENST00000563455 DCAF1Q9Y4B6 1507 aa25.92■■□□□ 1.74
SMPD3-205ENST00000563455 UNC13AQ9UPW8 1703 aa25.83■■□□□ 1.73
SMPD3-205ENST00000563455 BICRAQ9NZM4 1560 aa25.8■■□□□ 1.72
SMPD3-205ENST00000563455 SHROOM4Q9ULL8 1493 aa25.69■■□□□ 1.7
SMPD3-205ENST00000563455 SCRIBQ14160 1630 aa25.48■■□□□ 1.67
SMPD3-205ENST00000563455 CECR2Q9BXF3 1484 aa25.29■■□□□ 1.64
SMPD3-205ENST00000563455 CC2D2AQ9P2K1 1620 aa25.26■■□□□ 1.63
SMPD3-205ENST00000563455 EIF4G1Q04637 1599 aaKnown RBP25.25■■□□□ 1.63
SMPD3-205ENST00000563455 NCAPD3P42695 1498 aa24.58■■□□□ 1.52
SMPD3-205ENST00000563455 ATAD2BQ9ULI0 1458 aa24.45■■□□□ 1.5
SMPD3-205ENST00000563455 SMARCA2P51531 1590 aa24.42■■□□□ 1.5
SMPD3-205ENST00000563455 SMARCA4P51532 1647 aa24.34■■□□□ 1.49
SMPD3-205ENST00000563455 BAZ1AQ9NRL2 1556 aaPredicted RBP24.33■■□□□ 1.49
SMPD3-205ENST00000563455 HMGXB3Q12766 1538 aa24.31■■□□□ 1.48
SMPD3-205ENST00000563455 ERCC6Q03468 1493 aa24.29■■□□□ 1.48
SMPD3-205ENST00000563455 SUPT5HO00267 1087 aaKnown RBP24.27■■□□□ 1.48
SMPD3-205ENST00000563455 DNAJC5Q9H3Z4 198 aa24.24■■□□□ 1.47
SMPD3-205ENST00000563455 BAZ1BQ9UIG0 1483 aaKnown RBP24.24■■□□□ 1.47
SMPD3-205ENST00000563455 CUX2O14529 1486 aa24.23■■□□□ 1.47
SMPD3-205ENST00000563455 PEG3Q9GZU2 1588 aa24.16■■□□□ 1.46
SMPD3-205ENST00000563455 RSF1Q96T23 1441 aaPredicted RBP24.08■■□□□ 1.44
SMPD3-205ENST00000563455 MROH2BQ7Z745 1585 aa24.06■■□□□ 1.44
SMPD3-205ENST00000563455 NESP48681 1621 aa24.02■■□□□ 1.44
SMPD3-205ENST00000563455 LAMC3Q9Y6N6 1575 aa23.96■■□□□ 1.43
SMPD3-205ENST00000563455 PDS5BQ9NTI5 1447 aa23.95■■□□□ 1.42
SMPD3-205ENST00000563455 CADPSQ9ULU8 1353 aa23.86■■□□□ 1.41
SMPD3-205ENST00000563455 WIZO95785 1651 aa23.71■■□□□ 1.39
SMPD3-205ENST00000563455 THOC2Q8NI27 1593 aaKnown RBP23.71■■□□□ 1.39
SMPD3-205ENST00000563455 MRC2Q9UBG0 1479 aa23.62■■□□□ 1.37
SMPD3-205ENST00000563455 KIF21AQ7Z4S6 1674 aa23.61■■□□□ 1.37
SMPD3-205ENST00000563455 TOP2AP11388 1531 aaKnown RBP23.55■■□□□ 1.36
SMPD3-205ENST00000563455 CEP164Q9UPV0 1460 aa23.55■■□□□ 1.36
SMPD3-205ENST00000563455 CFTRP13569 1480 aa23.54■■□□□ 1.36
SMPD3-205ENST00000563455 FANCD2Q9BXW9 1451 aa23.52■■□□□ 1.36
SMPD3-205ENST00000563455 WDR62O43379 1518 aa23.5■■□□□ 1.35
SMPD3-205ENST00000563455 CHIC1Q5VXU3 224 aa23.36■■□□□ 1.33
SMPD3-205ENST00000563455 CCDC88BA6NC98 1476 aa23.28■■□□□ 1.32
SMPD3-205ENST00000563455 OSCARQ8IYS5 282 aa23.27■■□□□ 1.32
SMPD3-205ENST00000563455 URB2Q14146 1524 aaKnown RBP23.23■■□□□ 1.31
SMPD3-205ENST00000563455 ABCC8Q09428 1581 aa23.16■■□□□ 1.3
SMPD3-205ENST00000563455 TRIM41Q8WV44 630 aa23.16■■□□□ 1.3
SMPD3-205ENST00000563455 IFT140Q96RY7 1462 aa23.11■■□□□ 1.29
SMPD3-205ENST00000563455 PRDM2Q13029 1718 aa23.08■■□□□ 1.28
SMPD3-205ENST00000563455 TOPBP1Q92547 1522 aa23.03■■□□□ 1.28
SMPD3-205ENST00000563455 DNMBPQ6XZF7 1577 aa22.95■■□□□ 1.26
SMPD3-205ENST00000563455 ZNF608Q9ULD9 1512 aaPredicted RBP22.93■■□□□ 1.26
SMPD3-205ENST00000563455 SOGA1O94964 1423 aa22.82■■□□□ 1.24
SMPD3-205ENST00000563455 AQRO60306 1485 aaKnown RBP eCLIP22.81■■□□□ 1.24
SMPD3-205ENST00000563455 POLA1P09884 1462 aaPredicted RBP22.8■■□□□ 1.24
SMPD3-205ENST00000563455 FBLN2P98095 1184 aa22.8■■□□□ 1.24
SMPD3-205ENST00000563455 EIF4G3O43432 1585 aaKnown RBP22.77■■□□□ 1.24
SMPD3-205ENST00000563455 TARBP1Q13395 1621 aaKnown RBP22.75■■□□□ 1.23
SMPD3-205ENST00000563455 TDRD9Q8NDG6 1382 aaKnown RBP22.72■■□□□ 1.23
SMPD3-205ENST00000563455 WRNQ14191 1432 aaPredicted RBP eCLIP22.72■■□□□ 1.23
SMPD3-205ENST00000563455 RAD54L2Q9Y4B4 1467 aa22.7■■□□□ 1.22
SMPD3-205ENST00000563455 CHMP7Q8WUX9 453 aaPredicted RBP22.68■■□□□ 1.22
SMPD3-205ENST00000563455 ARHGEF11O15085 1522 aa22.67■■□□□ 1.22
SMPD3-205ENST00000563455 FGD5Q6ZNL6 1462 aa22.66■■□□□ 1.22
SMPD3-205ENST00000563455 CYB5RLQ6IPT4 315 aa22.66■■□□□ 1.22
SMPD3-205ENST00000563455 RIMBP3CA6NJZ7 1639 aa22.66■■□□□ 1.22
SMPD3-205ENST00000563455 RIMBP3BA6NNM3 1639 aa22.66■■□□□ 1.22
SMPD3-205ENST00000563455 RIMBP3Q9UFD9 1639 aa22.66■■□□□ 1.22
SMPD3-205ENST00000563455 WDR97A6NE52 1622 aa22.65■■□□□ 1.22
SMPD3-205ENST00000563455 EEA1Q15075 1411 aa22.62■■□□□ 1.21
SMPD3-205ENST00000563455 CUX1P39880 1505 aa22.59■■□□□ 1.21
SMPD3-205ENST00000563455 GRIN2BQ13224 1484 aa22.59■■□□□ 1.21
SMPD3-205ENST00000563455 MAGI1Q96QZ7 1491 aaPredicted RBP22.57■■□□□ 1.2
SMPD3-205ENST00000563455 SNAPC4Q5SXM2 1469 aa22.54■■□□□ 1.2
SMPD3-205ENST00000563455 CHD1O14646 1710 aa22.53■■□□□ 1.2
SMPD3-205ENST00000563455 SYNJ2O15056 1496 aa22.49■■□□□ 1.19
SMPD3-205ENST00000563455 GAPVD1Q14C86 1478 aa22.49■■□□□ 1.19
SMPD3-205ENST00000563455 TOP2BQ02880 1626 aa22.49■■□□□ 1.19
SMPD3-205ENST00000563455 SYNJ1O43426 1573 aa22.46■■□□□ 1.19
SMPD3-205ENST00000563455 TRHP20396 242 aaPredicted RBP22.45■■□□□ 1.18
SMPD3-205ENST00000563455 ABCA10Q8WWZ4 1543 aa22.45■■□□□ 1.18
SMPD3-205ENST00000563455 BIVM-ERCC5R4GMW8 1640 aa22.43■■□□□ 1.18
SMPD3-205ENST00000563455 ARAP1Q96P48 1450 aa22.41■■□□□ 1.18
SMPD3-205ENST00000563455 CLASP1Q7Z460 1538 aa22.37■■□□□ 1.17
SMPD3-205ENST00000563455 CSRNP3Q8WYN3 585 aa22.34■■□□□ 1.17
SMPD3-205ENST00000563455 FAM9AQ8IZU1 332 aaPredicted RBP22.32■■□□□ 1.16
SMPD3-205ENST00000563455 LOC105371045A0A1W2PR82 267 aa22.29■■□□□ 1.16
SMPD3-205ENST00000563455 ABCA5Q8WWZ7 1642 aa22.28■■□□□ 1.16
SMPD3-205ENST00000563455 PBRM1Q86U86 1689 aa22.27■■□□□ 1.16
SMPD3-205ENST00000563455 FHAD1B1AJZ9 1412 aa22.24■■□□□ 1.15
SMPD3-205ENST00000563455 GRIN2AQ12879 1464 aa22.24■■□□□ 1.15
SMPD3-205ENST00000563455 KIF27Q86VH2 1401 aa22.22■■□□□ 1.15
SMPD3-205ENST00000563455 ERICH3Q5RHP9 1530 aa22.18■■□□□ 1.14
SMPD3-205ENST00000563455 NUP160Q12769 1436 aa22.16■■□□□ 1.14
SMPD3-205ENST00000563455 GOLGA3Q08378 1498 aa22.13■■□□□ 1.13
SMPD3-205ENST00000563455 ADAMTS12P58397 1594 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms