RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 NISCHQ9Y2I1 1504 aa23.68■■□□□ 1.38
SMG1-208ENST00000563448 CCDC180Q9P1Z9 1646 aa20.84■□□□□ 0.93
SMG1-208ENST00000563448 ZCCHC6Q5VYS8 1495 aaKnown RBP19.84■□□□□ 0.77
SMG1-208ENST00000563448 ABCC9O60706 1549 aa19.81■□□□□ 0.76
SMG1-208ENST00000563448 DCAF1Q9Y4B6 1507 aa19.59■□□□□ 0.73
SMG1-208ENST00000563448 DCAF8L2P0C7V8 631 aa19.54■□□□□ 0.72
SMG1-208ENST00000563448 MYO15BQ96JP2 1530 aa19.45■□□□□ 0.7
SMG1-208ENST00000563448 NACADO15069 1562 aa19.4■□□□□ 0.7
SMG1-208ENST00000563448 RB1CC1Q8TDY2 1594 aa19.3■□□□□ 0.68
SMG1-208ENST00000563448 SHROOM4Q9ULL8 1493 aa19.08■□□□□ 0.65
SMG1-208ENST00000563448 SCRIBQ14160 1630 aa19.07■□□□□ 0.64
SMG1-208ENST00000563448 UNC13AQ9UPW8 1703 aa19.04■□□□□ 0.64
SMG1-208ENST00000563448 BICRAQ9NZM4 1560 aa18.75■□□□□ 0.59
SMG1-208ENST00000563448 PABPN1Q86U42 306 aaKnown RBP eCLIP18.6■□□□□ 0.57
SMG1-208ENST00000563448 CECR2Q9BXF3 1484 aa18.41■□□□□ 0.54
SMG1-208ENST00000563448 BAZ1AQ9NRL2 1556 aaPredicted RBP18.3■□□□□ 0.52
SMG1-208ENST00000563448 SMARCA4P51532 1647 aa18.29■□□□□ 0.52
SMG1-208ENST00000563448 MROH2BQ7Z745 1585 aa18.29■□□□□ 0.52
SMG1-208ENST00000563448 RSF1Q96T23 1441 aaPredicted RBP18.25■□□□□ 0.51
SMG1-208ENST00000563448 SUPT5HO00267 1087 aaKnown RBP18.23■□□□□ 0.51
SMG1-208ENST00000563448 WIZO95785 1651 aa18.18■□□□□ 0.5
SMG1-208ENST00000563448 EIF4G1Q04637 1599 aaKnown RBP18.18■□□□□ 0.5
SMG1-208ENST00000563448 PEG3Q9GZU2 1588 aa18.07■□□□□ 0.48
SMG1-208ENST00000563448 ATAD2BQ9ULI0 1458 aa17.99■□□□□ 0.47
SMG1-208ENST00000563448 SMARCA2P51531 1590 aa17.99■□□□□ 0.47
SMG1-208ENST00000563448 CC2D2AQ9P2K1 1620 aa17.98■□□□□ 0.47
SMG1-208ENST00000563448 TOP2AP11388 1531 aaKnown RBP17.94■□□□□ 0.46
SMG1-208ENST00000563448 NCAPD3P42695 1498 aa17.88■□□□□ 0.45
SMG1-208ENST00000563448 BAZ1BQ9UIG0 1483 aaKnown RBP17.88■□□□□ 0.45
SMG1-208ENST00000563448 HMGXB3Q12766 1538 aa17.87■□□□□ 0.45
SMG1-208ENST00000563448 CCDC88BA6NC98 1476 aa17.73■□□□□ 0.43
SMG1-208ENST00000563448 DNAJC5BQ9UF47 199 aa17.67■□□□□ 0.42
SMG1-208ENST00000563448 PRDM2Q13029 1718 aa17.48■□□□□ 0.39
SMG1-208ENST00000563448 CFTRP13569 1480 aa17.42■□□□□ 0.38
SMG1-208ENST00000563448 CADPSQ9ULU8 1353 aa17.38■□□□□ 0.37
SMG1-208ENST00000563448 LAMC3Q9Y6N6 1575 aa17.35■□□□□ 0.37
SMG1-208ENST00000563448 CHIC1Q5VXU3 224 aa17.35■□□□□ 0.37
SMG1-208ENST00000563448 NESP48681 1621 aa17.34■□□□□ 0.37
SMG1-208ENST00000563448 ABCC8Q09428 1581 aa17.31■□□□□ 0.36
SMG1-208ENST00000563448 KIF21AQ7Z4S6 1674 aa17.23■□□□□ 0.35
SMG1-208ENST00000563448 FANCD2Q9BXW9 1451 aa17.2■□□□□ 0.34
SMG1-208ENST00000563448 SYNJ1O43426 1573 aa17.18■□□□□ 0.34
SMG1-208ENST00000563448 WRNQ14191 1432 aaPredicted RBP eCLIP17.18■□□□□ 0.34
SMG1-208ENST00000563448 TRIM41Q8WV44 630 aa17.16■□□□□ 0.34
SMG1-208ENST00000563448 PDS5BQ9NTI5 1447 aa17.15■□□□□ 0.34
SMG1-208ENST00000563448 BIVM-ERCC5R4GMW8 1640 aa17.15■□□□□ 0.34
SMG1-208ENST00000563448 TOP2BQ02880 1626 aa17.13■□□□□ 0.33
SMG1-208ENST00000563448 CEP164Q9UPV0 1460 aa17.12■□□□□ 0.33
SMG1-208ENST00000563448 CUX1P39880 1505 aa17.11■□□□□ 0.33
SMG1-208ENST00000563448 DNMBPQ6XZF7 1577 aa17.05■□□□□ 0.32
SMG1-208ENST00000563448 URB2Q14146 1524 aaKnown RBP17.02■□□□□ 0.32
SMG1-208ENST00000563448 TOPBP1Q92547 1522 aa17.01■□□□□ 0.31
SMG1-208ENST00000563448 ERCC6Q03468 1493 aa16.99■□□□□ 0.31
SMG1-208ENST00000563448 MRC2Q9UBG0 1479 aa16.98■□□□□ 0.31
SMG1-208ENST00000563448 THOC2Q8NI27 1593 aaKnown RBP16.97■□□□□ 0.31
SMG1-208ENST00000563448 FGD5Q6ZNL6 1462 aa16.95■□□□□ 0.3
SMG1-208ENST00000563448 WDR62O43379 1518 aa16.93■□□□□ 0.3
SMG1-208ENST00000563448 POLA1P09884 1462 aaPredicted RBP16.9■□□□□ 0.3
SMG1-208ENST00000563448 SOGA1O94964 1423 aa16.89■□□□□ 0.29
SMG1-208ENST00000563448 RUSC2Q8N2Y8 1516 aa16.87■□□□□ 0.29
SMG1-208ENST00000563448 WDR97A6NE52 1622 aa16.87■□□□□ 0.29
SMG1-208ENST00000563448 RAD54L2Q9Y4B4 1467 aa16.84■□□□□ 0.29
SMG1-208ENST00000563448 FAM9AQ8IZU1 332 aaPredicted RBP16.83■□□□□ 0.28
SMG1-208ENST00000563448 TARBP1Q13395 1621 aaKnown RBP16.82■□□□□ 0.28
SMG1-208ENST00000563448 CUX2O14529 1486 aa16.8■□□□□ 0.28
SMG1-208ENST00000563448 EEA1Q15075 1411 aa16.8■□□□□ 0.28
SMG1-208ENST00000563448 ABCA10Q8WWZ4 1543 aa16.8■□□□□ 0.28
SMG1-208ENST00000563448 KIF27Q86VH2 1401 aa16.75■□□□□ 0.27
SMG1-208ENST00000563448 ABCA5Q8WWZ7 1642 aa16.73■□□□□ 0.27
SMG1-208ENST00000563448 IFT140Q96RY7 1462 aa16.73■□□□□ 0.27
SMG1-208ENST00000563448 CSRNP3Q8WYN3 585 aa16.71■□□□□ 0.27
SMG1-208ENST00000563448 PBRM1Q86U86 1689 aa16.69■□□□□ 0.26
SMG1-208ENST00000563448 TDRD9Q8NDG6 1382 aaKnown RBP16.67■□□□□ 0.26
SMG1-208ENST00000563448 LOC105371045A0A1W2PR82 267 aa16.67■□□□□ 0.26
SMG1-208ENST00000563448 KIF21BO75037 1637 aa16.66■□□□□ 0.26
SMG1-208ENST00000563448 ZNF608Q9ULD9 1512 aaPredicted RBP16.66■□□□□ 0.26
SMG1-208ENST00000563448 GAPVD1Q14C86 1478 aa16.64■□□□□ 0.25
SMG1-208ENST00000563448 EIF4G3O43432 1585 aaKnown RBP16.64■□□□□ 0.25
SMG1-208ENST00000563448 IGF1RP08069 1367 aa16.63■□□□□ 0.25
SMG1-208ENST00000563448 AQRO60306 1485 aaKnown RBP eCLIP16.62■□□□□ 0.252e-6■■■□□ 18.8
SMG1-208ENST00000563448 ERICH3Q5RHP9 1530 aa16.61■□□□□ 0.25
SMG1-208ENST00000563448 CUL7Q14999 1698 aa16.61■□□□□ 0.25
SMG1-208ENST00000563448 PRXQ9BXM0 1461 aa16.61■□□□□ 0.25
SMG1-208ENST00000563448 EHMT2Q96KQ7 1210 aa16.6■□□□□ 0.25
SMG1-208ENST00000563448 GOLGA3Q08378 1498 aa16.57■□□□□ 0.24
SMG1-208ENST00000563448 RAPGEF2Q9Y4G8 1499 aa16.56■□□□□ 0.24
SMG1-208ENST00000563448 GRIN2BQ13224 1484 aa16.55■□□□□ 0.24
SMG1-208ENST00000563448 CARMIL1Q5VZK9 1371 aa16.54■□□□□ 0.24
SMG1-208ENST00000563448 ADAMTS12P58397 1594 aa16.51■□□□□ 0.23
SMG1-208ENST00000563448 SNAPC4Q5SXM2 1469 aa16.47■□□□□ 0.23
SMG1-208ENST00000563448 UBTFP17480 764 aaKnown RBP16.46■□□□□ 0.23
SMG1-208ENST00000563448 TNIKQ9UKE5 1360 aa16.46■□□□□ 0.23
SMG1-208ENST00000563448 FHAD1B1AJZ9 1412 aa16.45■□□□□ 0.22
SMG1-208ENST00000563448 MAGI1Q96QZ7 1491 aaPredicted RBP16.45■□□□□ 0.22
SMG1-208ENST00000563448 CTTNBP2Q8WZ74 1663 aa16.44■□□□□ 0.22
SMG1-208ENST00000563448 SYNJ2O15056 1496 aa16.38■□□□□ 0.21
SMG1-208ENST00000563448 CHD1O14646 1710 aa16.38■□□□□ 0.21
SMG1-208ENST00000563448 GRIN2AQ12879 1464 aa16.35■□□□□ 0.21
SMG1-208ENST00000563448 CEP162Q5TB80 1403 aa16.35■□□□□ 0.21
SMG1-208ENST00000563448 CHMP7Q8WUX9 453 aaPredicted RBP16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms