RNA–Protein interactions for RNA: ENST00000562707.5

CMTM3-205, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

APPRIS P1 TSL 3 BASIC

Gene CMTM3, Length 714 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-205ENST00000562707 NISCHQ9Y2I1 1504 aa41.54■■■■■ 4.24
CMTM3-205ENST00000562707 ABCC9O60706 1549 aa37.53■■■■□ 3.6
CMTM3-205ENST00000562707 CCDC180Q9P1Z9 1646 aa37.23■■■■□ 3.55
CMTM3-205ENST00000562707 RB1CC1Q8TDY2 1594 aa35.62■■■■□ 3.29
CMTM3-205ENST00000562707 DNAJC5BQ9UF47 199 aa35.38■■■■□ 3.25
CMTM3-205ENST00000562707 NACADO15069 1562 aa35.34■■■■□ 3.25
CMTM3-205ENST00000562707 DCAF8L2P0C7V8 631 aa35.33■■■■□ 3.25
CMTM3-205ENST00000562707 PABPN1Q86U42 306 aaKnown RBP eCLIP35■■■■□ 3.19
CMTM3-205ENST00000562707 MYO15BQ96JP2 1530 aa34.81■■■■□ 3.16
CMTM3-205ENST00000562707 UNC13AQ9UPW8 1703 aa34.59■■■■□ 3.13
CMTM3-205ENST00000562707 BICRAQ9NZM4 1560 aa34.52■■■■□ 3.12
CMTM3-205ENST00000562707 ZCCHC6Q5VYS8 1495 aaKnown RBP34.37■■■■□ 3.09
CMTM3-205ENST00000562707 DCAF1Q9Y4B6 1507 aa34.3■■■■□ 3.08
CMTM3-205ENST00000562707 SHROOM4Q9ULL8 1493 aa34.11■■■■□ 3.05
CMTM3-205ENST00000562707 SCRIBQ14160 1630 aa33.97■■■■□ 3.03
CMTM3-205ENST00000562707 CECR2Q9BXF3 1484 aa33.84■■■■□ 3.01
CMTM3-205ENST00000562707 CC2D2AQ9P2K1 1620 aa33.82■■■■□ 3.01
CMTM3-205ENST00000562707 EIF4G1Q04637 1599 aaKnown RBP33.72■■■□□ 2.99
CMTM3-205ENST00000562707 NCAPD3P42695 1498 aa32.67■■■□□ 2.82
CMTM3-205ENST00000562707 DNAJC5Q9H3Z4 198 aa32.65■■■□□ 2.82
CMTM3-205ENST00000562707 ATAD2BQ9ULI0 1458 aa32.54■■■□□ 2.8
CMTM3-205ENST00000562707 ERCC6Q03468 1493 aa32.46■■■□□ 2.79
CMTM3-205ENST00000562707 SMARCA2P51531 1590 aa32.42■■■□□ 2.78
CMTM3-205ENST00000562707 CUX2O14529 1486 aa32.41■■■□□ 2.78
CMTM3-205ENST00000562707 SMARCA4P51532 1647 aa32.38■■■□□ 2.77
CMTM3-205ENST00000562707 HMGXB3Q12766 1538 aa32.34■■■□□ 2.77
CMTM3-205ENST00000562707 BAZ1AQ9NRL2 1556 aaPredicted RBP32.26■■■□□ 2.75
CMTM3-205ENST00000562707 BAZ1BQ9UIG0 1483 aaKnown RBP32.22■■■□□ 2.75
CMTM3-205ENST00000562707 NESP48681 1621 aa32.16■■■□□ 2.74
CMTM3-205ENST00000562707 PEG3Q9GZU2 1588 aa32.07■■■□□ 2.72
CMTM3-205ENST00000562707 MROH2BQ7Z745 1585 aa31.99■■■□□ 2.71
CMTM3-205ENST00000562707 LAMC3Q9Y6N6 1575 aa31.9■■■□□ 2.7
CMTM3-205ENST00000562707 PDS5BQ9NTI5 1447 aa31.83■■■□□ 2.69
CMTM3-205ENST00000562707 THOC2Q8NI27 1593 aaKnown RBP31.78■■■□□ 2.68
CMTM3-205ENST00000562707 CADPSQ9ULU8 1353 aa31.71■■■□□ 2.67
CMTM3-205ENST00000562707 KIF21AQ7Z4S6 1674 aa31.61■■■□□ 2.65
CMTM3-205ENST00000562707 WIZO95785 1651 aa31.54■■■□□ 2.64
CMTM3-205ENST00000562707 MRC2Q9UBG0 1479 aa31.5■■■□□ 2.63
CMTM3-205ENST00000562707 WDR62O43379 1518 aa31.37■■■□□ 2.61
CMTM3-205ENST00000562707 CEP164Q9UPV0 1460 aa31.35■■■□□ 2.61
CMTM3-205ENST00000562707 RSF1Q96T23 1441 aaPredicted RBP31.33■■■□□ 2.61
CMTM3-205ENST00000562707 FANCD2Q9BXW9 1451 aa31.32■■■□□ 2.6
CMTM3-205ENST00000562707 CFTRP13569 1480 aa31.27■■■□□ 2.6
CMTM3-205ENST00000562707 TRIM41Q8WV44 630 aa31.19■■■□□ 2.58
CMTM3-205ENST00000562707 TOP2AP11388 1531 aaKnown RBP31.19■■■□□ 2.58
CMTM3-205ENST00000562707 URB2Q14146 1524 aaKnown RBP31.03■■■□□ 2.56
CMTM3-205ENST00000562707 OSCARQ8IYS5 282 aa31.02■■■□□ 2.56
CMTM3-205ENST00000562707 CCDC88BA6NC98 1476 aa30.89■■■□□ 2.54
CMTM3-205ENST00000562707 IFT140Q96RY7 1462 aa30.75■■■□□ 2.51
CMTM3-205ENST00000562707 PRDM2Q13029 1718 aa30.71■■■□□ 2.51
CMTM3-205ENST00000562707 TOPBP1Q92547 1522 aa30.68■■■□□ 2.5
CMTM3-205ENST00000562707 ZNF608Q9ULD9 1512 aaPredicted RBP30.68■■■□□ 2.5
CMTM3-205ENST00000562707 ABCC8Q09428 1581 aa30.66■■■□□ 2.5
CMTM3-205ENST00000562707 DNMBPQ6XZF7 1577 aa30.52■■■□□ 2.48
CMTM3-205ENST00000562707 RIMBP3CA6NJZ7 1639 aa30.44■■■□□ 2.46
CMTM3-205ENST00000562707 RIMBP3BA6NNM3 1639 aa30.44■■■□□ 2.46
CMTM3-205ENST00000562707 RIMBP3Q9UFD9 1639 aa30.44■■■□□ 2.46
CMTM3-205ENST00000562707 EIF4G3O43432 1585 aaKnown RBP30.43■■■□□ 2.46
CMTM3-205ENST00000562707 AQRO60306 1485 aaKnown RBP eCLIP30.43■■■□□ 2.46
CMTM3-205ENST00000562707 ARHGEF11O15085 1522 aa30.38■■■□□ 2.45
CMTM3-205ENST00000562707 FBLN2P98095 1184 aa30.37■■■□□ 2.45
CMTM3-205ENST00000562707 POLA1P09884 1462 aaPredicted RBP30.35■■■□□ 2.45
CMTM3-205ENST00000562707 TARBP1Q13395 1621 aaKnown RBP30.34■■■□□ 2.45
CMTM3-205ENST00000562707 CYB5RLQ6IPT4 315 aa30.31■■■□□ 2.44
CMTM3-205ENST00000562707 SOGA1O94964 1423 aa30.3■■■□□ 2.44
CMTM3-205ENST00000562707 RAD54L2Q9Y4B4 1467 aa30.26■■■□□ 2.44
CMTM3-205ENST00000562707 TDRD9Q8NDG6 1382 aaKnown RBP30.25■■■□□ 2.43
CMTM3-205ENST00000562707 CHD1O14646 1710 aa30.16■■■□□ 2.42
CMTM3-205ENST00000562707 FGD5Q6ZNL6 1462 aa30.14■■■□□ 2.42
CMTM3-205ENST00000562707 CHMP7Q8WUX9 453 aaPredicted RBP30.11■■■□□ 2.41
CMTM3-205ENST00000562707 SNAPC4Q5SXM2 1469 aa30.08■■■□□ 2.41
CMTM3-205ENST00000562707 ARAP1Q96P48 1450 aa30.07■■■□□ 2.4
CMTM3-205ENST00000562707 CUX1P39880 1505 aa30.06■■■□□ 2.4
CMTM3-205ENST00000562707 WDR97A6NE52 1622 aa30.05■■■□□ 2.4
CMTM3-205ENST00000562707 TRHP20396 242 aaPredicted RBP30.05■■■□□ 2.4
CMTM3-205ENST00000562707 GRIN2BQ13224 1484 aa30.01■■■□□ 2.4
CMTM3-205ENST00000562707 MAGI1Q96QZ7 1491 aaPredicted RBP30■■■□□ 2.39
CMTM3-205ENST00000562707 SUPT5HO00267 1087 aaKnown RBP29.95■■■□□ 2.39
CMTM3-205ENST00000562707 SYNJ1O43426 1573 aa29.92■■■□□ 2.38
CMTM3-205ENST00000562707 SYNJ2O15056 1496 aa29.92■■■□□ 2.38
CMTM3-205ENST00000562707 CLASP1Q7Z460 1538 aa29.91■■■□□ 2.38
CMTM3-205ENST00000562707 GAPVD1Q14C86 1478 aa29.87■■■□□ 2.37
CMTM3-205ENST00000562707 ABCA10Q8WWZ4 1543 aa29.8■■■□□ 2.36
CMTM3-205ENST00000562707 WRNQ14191 1432 aaPredicted RBP eCLIP29.71■■■□□ 2.35
CMTM3-205ENST00000562707 PBRM1Q86U86 1689 aa29.7■■■□□ 2.35
CMTM3-205ENST00000562707 ABCA5Q8WWZ7 1642 aa29.68■■■□□ 2.34
CMTM3-205ENST00000562707 GRIN2AQ12879 1464 aa29.59■■■□□ 2.33
CMTM3-205ENST00000562707 FHAD1B1AJZ9 1412 aa29.52■■■□□ 2.32
CMTM3-205ENST00000562707 TOP2BQ02880 1626 aa29.52■■■□□ 2.32
CMTM3-205ENST00000562707 NUP160Q12769 1436 aa29.5■■■□□ 2.31
CMTM3-205ENST00000562707 ADAMTS12P58397 1594 aa29.48■■■□□ 2.31
CMTM3-205ENST00000562707 BIVM-ERCC5R4GMW8 1640 aa29.48■■■□□ 2.31
CMTM3-205ENST00000562707 CEP170Q5SW79 1584 aa29.43■■■□□ 2.3
CMTM3-205ENST00000562707 ERCC6L2Q5T890 1561 aa29.42■■■□□ 2.3
CMTM3-205ENST00000562707 ERICH3Q5RHP9 1530 aa29.41■■■□□ 2.3
CMTM3-205ENST00000562707 JPH4Q96JJ6 628 aa29.32■■■□□ 2.28
CMTM3-205ENST00000562707 AEBP2Q6ZN18 517 aaPredicted RBP29.31■■■□□ 2.28
CMTM3-205ENST00000562707 SHROOM2Q13796 1616 aa29.29■■■□□ 2.28
CMTM3-205ENST00000562707 PRG4Q92954 1404 aaPredicted RBP29.28■■■□□ 2.28
CMTM3-205ENST00000562707 NPM1P06748 294 aaKnown RBP eCLIP29.13■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms