RNA–Protein interactions for RNA: ENST00000561298.1

PKNOX2-213, Transcript of PBX/knotted 1 homeobox 2, humanhuman

TSL 4

Gene PKNOX2, Length 591 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX2-213ENST00000561298 NISCHQ9Y2I1 1504 aa23.03■■□□□ 1.28
PKNOX2-213ENST00000561298 CCDC180Q9P1Z9 1646 aa20.45■□□□□ 0.87
PKNOX2-213ENST00000561298 ABCC9O60706 1549 aa19.76■□□□□ 0.75
PKNOX2-213ENST00000561298 ZCCHC6Q5VYS8 1495 aaKnown RBP19.24■□□□□ 0.67
PKNOX2-213ENST00000561298 NACADO15069 1562 aa19.12■□□□□ 0.65
PKNOX2-213ENST00000561298 RB1CC1Q8TDY2 1594 aa19.1■□□□□ 0.65
PKNOX2-213ENST00000561298 MYO15BQ96JP2 1530 aa19.07■□□□□ 0.64
PKNOX2-213ENST00000561298 DCAF1Q9Y4B6 1507 aa19.07■□□□□ 0.64
PKNOX2-213ENST00000561298 DCAF8L2P0C7V8 631 aa18.99■□□□□ 0.63
PKNOX2-213ENST00000561298 UNC13AQ9UPW8 1703 aa18.87■□□□□ 0.61
PKNOX2-213ENST00000561298 SCRIBQ14160 1630 aa18.65■□□□□ 0.58
PKNOX2-213ENST00000561298 BICRAQ9NZM4 1560 aa18.61■□□□□ 0.57
PKNOX2-213ENST00000561298 PABPN1Q86U42 306 aaKnown RBP eCLIP18.44■□□□□ 0.54
PKNOX2-213ENST00000561298 SHROOM4Q9ULL8 1493 aa18.32■□□□□ 0.52
PKNOX2-213ENST00000561298 EIF4G1Q04637 1599 aaKnown RBP18.04■□□□□ 0.48
PKNOX2-213ENST00000561298 DNAJC5BQ9UF47 199 aa18■□□□□ 0.47
PKNOX2-213ENST00000561298 CC2D2AQ9P2K1 1620 aa17.94■□□□□ 0.46
PKNOX2-213ENST00000561298 CECR2Q9BXF3 1484 aa17.94■□□□□ 0.46
PKNOX2-213ENST00000561298 SMARCA4P51532 1647 aa17.87■□□□□ 0.45
PKNOX2-213ENST00000561298 BAZ1AQ9NRL2 1556 aaPredicted RBP17.81■□□□□ 0.44
PKNOX2-213ENST00000561298 MROH2BQ7Z745 1585 aa17.78■□□□□ 0.44
PKNOX2-213ENST00000561298 PEG3Q9GZU2 1588 aa17.7■□□□□ 0.42
PKNOX2-213ENST00000561298 ATAD2BQ9ULI0 1458 aa17.68■□□□□ 0.42
PKNOX2-213ENST00000561298 SMARCA2P51531 1590 aa17.66■□□□□ 0.42
PKNOX2-213ENST00000561298 WIZO95785 1651 aa17.63■□□□□ 0.41
PKNOX2-213ENST00000561298 NCAPD3P42695 1498 aa17.63■□□□□ 0.41
PKNOX2-213ENST00000561298 HMGXB3Q12766 1538 aa17.59■□□□□ 0.41
PKNOX2-213ENST00000561298 RSF1Q96T23 1441 aaPredicted RBP17.59■□□□□ 0.41
PKNOX2-213ENST00000561298 BAZ1BQ9UIG0 1483 aaKnown RBP17.5■□□□□ 0.39
PKNOX2-213ENST00000561298 TOP2AP11388 1531 aaKnown RBP17.4■□□□□ 0.38
PKNOX2-213ENST00000561298 NESP48681 1621 aa17.2■□□□□ 0.34
PKNOX2-213ENST00000561298 CCDC88BA6NC98 1476 aa17.18■□□□□ 0.34
PKNOX2-213ENST00000561298 SUPT5HO00267 1087 aaKnown RBP17.17■□□□□ 0.34
PKNOX2-213ENST00000561298 LAMC3Q9Y6N6 1575 aa17.15■□□□□ 0.34
PKNOX2-213ENST00000561298 PRDM2Q13029 1718 aa17.11■□□□□ 0.33
PKNOX2-213ENST00000561298 CADPSQ9ULU8 1353 aa17.09■□□□□ 0.33
PKNOX2-213ENST00000561298 KIF21AQ7Z4S6 1674 aa17.07■□□□□ 0.32
PKNOX2-213ENST00000561298 CFTRP13569 1480 aa17.06■□□□□ 0.32
PKNOX2-213ENST00000561298 ERCC6Q03468 1493 aa16.96■□□□□ 0.31
PKNOX2-213ENST00000561298 THOC2Q8NI27 1593 aaKnown RBP16.95■□□□□ 0.3
PKNOX2-213ENST00000561298 PDS5BQ9NTI5 1447 aa16.95■□□□□ 0.3
PKNOX2-213ENST00000561298 FANCD2Q9BXW9 1451 aa16.92■□□□□ 0.3
PKNOX2-213ENST00000561298 CEP164Q9UPV0 1460 aa16.87■□□□□ 0.29
PKNOX2-213ENST00000561298 MRC2Q9UBG0 1479 aa16.82■□□□□ 0.28
PKNOX2-213ENST00000561298 WDR62O43379 1518 aa16.8■□□□□ 0.28
PKNOX2-213ENST00000561298 URB2Q14146 1524 aaKnown RBP16.79■□□□□ 0.28
PKNOX2-213ENST00000561298 CUX2O14529 1486 aa16.76■□□□□ 0.27
PKNOX2-213ENST00000561298 TOPBP1Q92547 1522 aa16.7■□□□□ 0.26
PKNOX2-213ENST00000561298 DNMBPQ6XZF7 1577 aa16.7■□□□□ 0.26
PKNOX2-213ENST00000561298 CUX1P39880 1505 aa16.67■□□□□ 0.26
PKNOX2-213ENST00000561298 ABCC8Q09428 1581 aa16.64■□□□□ 0.25
PKNOX2-213ENST00000561298 BIVM-ERCC5R4GMW8 1640 aa16.6■□□□□ 0.25
PKNOX2-213ENST00000561298 SYNJ1O43426 1573 aa16.6■□□□□ 0.25
PKNOX2-213ENST00000561298 POLA1P09884 1462 aaPredicted RBP16.57■□□□□ 0.24
PKNOX2-213ENST00000561298 TOP2BQ02880 1626 aa16.56■□□□□ 0.24
PKNOX2-213ENST00000561298 TARBP1Q13395 1621 aaKnown RBP16.56■□□□□ 0.24
PKNOX2-213ENST00000561298 FGD5Q6ZNL6 1462 aa16.54■□□□□ 0.24
PKNOX2-213ENST00000561298 WRNQ14191 1432 aaPredicted RBP eCLIP16.54■□□□□ 0.24
PKNOX2-213ENST00000561298 WDR97A6NE52 1622 aa16.52■□□□□ 0.24
PKNOX2-213ENST00000561298 IFT140Q96RY7 1462 aa16.5■□□□□ 0.23
PKNOX2-213ENST00000561298 RAD54L2Q9Y4B4 1467 aa16.48■□□□□ 0.23
PKNOX2-213ENST00000561298 ZNF608Q9ULD9 1512 aaPredicted RBP16.47■□□□□ 0.23
PKNOX2-213ENST00000561298 EIF4G3O43432 1585 aaKnown RBP16.44■□□□□ 0.22
PKNOX2-213ENST00000561298 SOGA1O94964 1423 aa16.44■□□□□ 0.22
PKNOX2-213ENST00000561298 ABCA10Q8WWZ4 1543 aa16.4■□□□□ 0.22
PKNOX2-213ENST00000561298 ABCA5Q8WWZ7 1642 aa16.38■□□□□ 0.21
PKNOX2-213ENST00000561298 AQRO60306 1485 aaKnown RBP eCLIP16.36■□□□□ 0.21
PKNOX2-213ENST00000561298 PBRM1Q86U86 1689 aa16.36■□□□□ 0.21
PKNOX2-213ENST00000561298 TDRD9Q8NDG6 1382 aaKnown RBP16.33■□□□□ 0.2
PKNOX2-213ENST00000561298 GAPVD1Q14C86 1478 aa16.28■□□□□ 0.2
PKNOX2-213ENST00000561298 CHD1O14646 1710 aa16.26■□□□□ 0.19
PKNOX2-213ENST00000561298 GRIN2BQ13224 1484 aa16.24■□□□□ 0.19
PKNOX2-213ENST00000561298 SNAPC4Q5SXM2 1469 aa16.22■□□□□ 0.19
PKNOX2-213ENST00000561298 MAGI1Q96QZ7 1491 aaPredicted RBP16.2■□□□□ 0.18
PKNOX2-213ENST00000561298 ERICH3Q5RHP9 1530 aa16.19■□□□□ 0.18
PKNOX2-213ENST00000561298 ADAMTS12P58397 1594 aa16.19■□□□□ 0.18
PKNOX2-213ENST00000561298 CHIC1Q5VXU3 224 aa16.18■□□□□ 0.18
PKNOX2-213ENST00000561298 TRIM41Q8WV44 630 aa16.18■□□□□ 0.18
PKNOX2-213ENST00000561298 RUSC2Q8N2Y8 1516 aa16.17■□□□□ 0.18
PKNOX2-213ENST00000561298 KIF27Q86VH2 1401 aa16.16■□□□□ 0.18
PKNOX2-213ENST00000561298 SYNJ2O15056 1496 aa16.12■□□□□ 0.17
PKNOX2-213ENST00000561298 CUL7Q14999 1698 aa16.11■□□□□ 0.17
PKNOX2-213ENST00000561298 IGF1RP08069 1367 aa16.11■□□□□ 0.17
PKNOX2-213ENST00000561298 FHAD1B1AJZ9 1412 aa16.09■□□□□ 0.17
PKNOX2-213ENST00000561298 GRIN2AQ12879 1464 aa16.06■□□□□ 0.16
PKNOX2-213ENST00000561298 CEP170Q5SW79 1584 aa16.04■□□□□ 0.16
PKNOX2-213ENST00000561298 CLASP1Q7Z460 1538 aa16.03■□□□□ 0.16
PKNOX2-213ENST00000561298 FBLN2P98095 1184 aa16.02■□□□□ 0.16
PKNOX2-213ENST00000561298 OSCARQ8IYS5 282 aa16.01■□□□□ 0.15
PKNOX2-213ENST00000561298 CHMP7Q8WUX9 453 aaPredicted RBP16.01■□□□□ 0.15
PKNOX2-213ENST00000561298 DNAJC5Q9H3Z4 198 aa16■□□□□ 0.15
PKNOX2-213ENST00000561298 NUP160Q12769 1436 aa16■□□□□ 0.15
PKNOX2-213ENST00000561298 CARMIL1Q5VZK9 1371 aa15.99■□□□□ 0.15
PKNOX2-213ENST00000561298 EEA1Q15075 1411 aa15.96■□□□□ 0.15
PKNOX2-213ENST00000561298 PRXQ9BXM0 1461 aa15.96■□□□□ 0.14
PKNOX2-213ENST00000561298 RAPGEF2Q9Y4G8 1499 aa15.93■□□□□ 0.14
PKNOX2-213ENST00000561298 SHROOM2Q13796 1616 aa15.92■□□□□ 0.14
PKNOX2-213ENST00000561298 CTTNBP2Q8WZ74 1663 aa15.9■□□□□ 0.14
PKNOX2-213ENST00000561298 RIMBP3CA6NJZ7 1639 aa15.9■□□□□ 0.14
PKNOX2-213ENST00000561298 RIMBP3BA6NNM3 1639 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 101.8 ms