RNA–Protein interactions for RNA: ENST00000561268.5

SPG11-224, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 4

Gene SPG11, Length 530 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-224ENST00000561268 AEBP2Q6ZN18 517 aaPredicted RBP18.37■□□□□ 0.53
SPG11-224ENST00000561268 NISCHQ9Y2I1 1504 aa17.47■□□□□ 0.39
SPG11-224ENST00000561268 CHIC1Q5VXU3 224 aa17.16■□□□□ 0.34
SPG11-224ENST00000561268 CCDC180Q9P1Z9 1646 aa15.83■□□□□ 0.12
SPG11-224ENST00000561268 SENP3Q9H4L4 574 aaPredicted RBP15.72■□□□□ 0.11
SPG11-224ENST00000561268 PHF23Q9BUL5 403 aaPredicted RBP15.46■□□□□ 0.07
SPG11-224ENST00000561268 ABCC9O60706 1549 aa15.33■□□□□ 0.04
SPG11-224ENST00000561268 RB1CC1Q8TDY2 1594 aa14.82□□□□□ -0.04
SPG11-224ENST00000561268 NACADO15069 1562 aa14.78□□□□□ -0.04
SPG11-224ENST00000561268 MYO15BQ96JP2 1530 aa14.71□□□□□ -0.05
SPG11-224ENST00000561268 FOXD1Q16676 465 aa14.69□□□□□ -0.06
SPG11-224ENST00000561268 UNC13AQ9UPW8 1703 aa14.69□□□□□ -0.06
SPG11-224ENST00000561268 ZCCHC6Q5VYS8 1495 aaKnown RBP14.58□□□□□ -0.08
SPG11-224ENST00000561268 DCAF1Q9Y4B6 1507 aa14.56□□□□□ -0.08
SPG11-224ENST00000561268 BICRAQ9NZM4 1560 aa14.45□□□□□ -0.1
SPG11-224ENST00000561268 SHROOM4Q9ULL8 1493 aa14.32□□□□□ -0.12
SPG11-224ENST00000561268 SCRIBQ14160 1630 aa14.22□□□□□ -0.13
SPG11-224ENST00000561268 DCAF8L2P0C7V8 631 aa14.21□□□□□ -0.13
SPG11-224ENST00000561268 POTEDQ86YR6 584 aa14.19□□□□□ -0.14
SPG11-224ENST00000561268 DNAJC5BQ9UF47 199 aa14.15□□□□□ -0.14
SPG11-224ENST00000561268 PABPN1Q86U42 306 aaKnown RBP eCLIP14.12□□□□□ -0.15
SPG11-224ENST00000561268 EIF4G1Q04637 1599 aaKnown RBP14.02□□□□□ -0.16
SPG11-224ENST00000561268 CC2D2AQ9P2K1 1620 aa14□□□□□ -0.17
SPG11-224ENST00000561268 MSH5O43196 834 aa13.89□□□□□ -0.19
SPG11-224ENST00000561268 CECR2Q9BXF3 1484 aa13.82□□□□□ -0.2
SPG11-224ENST00000561268 PIAS4Q8N2W9 510 aaPredicted RBP13.69□□□□□ -0.22
SPG11-224ENST00000561268 SMARCA4P51532 1647 aa13.67□□□□□ -0.22
SPG11-224ENST00000561268 HMGXB3Q12766 1538 aa13.61□□□□□ -0.23
SPG11-224ENST00000561268 PEG3Q9GZU2 1588 aa13.61□□□□□ -0.23
SPG11-224ENST00000561268 SMARCA2P51531 1590 aa13.58□□□□□ -0.24
SPG11-224ENST00000561268 BAZ1AQ9NRL2 1556 aaPredicted RBP13.58□□□□□ -0.24
SPG11-224ENST00000561268 NCAPD3P42695 1498 aa13.57□□□□□ -0.24
SPG11-224ENST00000561268 ATAD2BQ9ULI0 1458 aa13.54□□□□□ -0.24
SPG11-224ENST00000561268 PLPPR3Q6T4P5 718 aa13.48□□□□□ -0.25
SPG11-224ENST00000561268 PPP6R1Q9UPN7 881 aa13.46□□□□□ -0.25
SPG11-224ENST00000561268 MROH2BQ7Z745 1585 aa13.44□□□□□ -0.26
SPG11-224ENST00000561268 ADRA2BP18089 450 aa13.41□□□□□ -0.26
SPG11-224ENST00000561268 BAZ1BQ9UIG0 1483 aaKnown RBP13.39□□□□□ -0.27
SPG11-224ENST00000561268 WIZO95785 1651 aa13.33□□□□□ -0.28
SPG11-224ENST00000561268 LAMC3Q9Y6N6 1575 aa13.32□□□□□ -0.28
SPG11-224ENST00000561268 THOC2Q8NI27 1593 aaKnown RBP13.29□□□□□ -0.28
SPG11-224ENST00000561268 CUX2O14529 1486 aa13.28□□□□□ -0.28
SPG11-224ENST00000561268 KIF21AQ7Z4S6 1674 aa13.28□□□□□ -0.28
SPG11-224ENST00000561268 NESP48681 1621 aa13.25□□□□□ -0.29
SPG11-224ENST00000561268 PRDM2Q13029 1718 aa13.22□□□□□ -0.29
SPG11-224ENST00000561268 TOP2AP11388 1531 aaKnown RBP13.2□□□□□ -0.3
SPG11-224ENST00000561268 ERCC6Q03468 1493 aa13.2□□□□□ -0.3
SPG11-224ENST00000561268 RSF1Q96T23 1441 aaPredicted RBP13.16□□□□□ -0.3
SPG11-224ENST00000561268 WDR62O43379 1518 aa13.08□□□□□ -0.31
SPG11-224ENST00000561268 PDS5BQ9NTI5 1447 aa13.08□□□□□ -0.32
SPG11-224ENST00000561268 CADPSQ9ULU8 1353 aa13.07□□□□□ -0.32
SPG11-224ENST00000561268 CFTRP13569 1480 aa13.05□□□□□ -0.32
SPG11-224ENST00000561268 MRC2Q9UBG0 1479 aa13.04□□□□□ -0.32
SPG11-224ENST00000561268 CEP164Q9UPV0 1460 aa13□□□□□ -0.33
SPG11-224ENST00000561268 FANCD2Q9BXW9 1451 aa12.97□□□□□ -0.33
SPG11-224ENST00000561268 CCDC88BA6NC98 1476 aa12.92□□□□□ -0.34
SPG11-224ENST00000561268 URB2Q14146 1524 aaKnown RBP12.9□□□□□ -0.34
SPG11-224ENST00000561268 DNAJC5Q9H3Z4 198 aa12.9□□□□□ -0.34
SPG11-224ENST00000561268 DNMBPQ6XZF7 1577 aa12.81□□□□□ -0.36
SPG11-224ENST00000561268 TOPBP1Q92547 1522 aa12.79□□□□□ -0.36
SPG11-224ENST00000561268 ABCC8Q09428 1581 aa12.77□□□□□ -0.37
SPG11-224ENST00000561268 TARBP1Q13395 1621 aaKnown RBP12.77□□□□□ -0.37
SPG11-224ENST00000561268 EIF4G3O43432 1585 aaKnown RBP12.74□□□□□ -0.37
SPG11-224ENST00000561268 WDR97A6NE52 1622 aa12.73□□□□□ -0.37
SPG11-224ENST00000561268 IFT140Q96RY7 1462 aa12.72□□□□□ -0.37
SPG11-224ENST00000561268 ZNF608Q9ULD9 1512 aaPredicted RBP12.67□□□□□ -0.38
SPG11-224ENST00000561268 POLA1P09884 1462 aaPredicted RBP12.66□□□□□ -0.38
SPG11-224ENST00000561268 CHD1O14646 1710 aa12.66□□□□□ -0.38
SPG11-224ENST00000561268 CUX1P39880 1505 aa12.64□□□□□ -0.39
SPG11-224ENST00000561268 BIVM-ERCC5R4GMW8 1640 aa12.61□□□□□ -0.39
SPG11-224ENST00000561268 PBRM1Q86U86 1689 aa12.6□□□□□ -0.39
SPG11-224ENST00000561268 FGD5Q6ZNL6 1462 aa12.59□□□□□ -0.39
SPG11-224ENST00000561268 ABCA5Q8WWZ7 1642 aa12.57□□□□□ -0.4
SPG11-224ENST00000561268 RIMBP3CA6NJZ7 1639 aa12.54□□□□□ -0.4
SPG11-224ENST00000561268 RIMBP3BA6NNM3 1639 aa12.54□□□□□ -0.4
SPG11-224ENST00000561268 TOP2BQ02880 1626 aa12.54□□□□□ -0.4
SPG11-224ENST00000561268 RIMBP3Q9UFD9 1639 aa12.54□□□□□ -0.4
SPG11-224ENST00000561268 RAD54L2Q9Y4B4 1467 aa12.53□□□□□ -0.4
SPG11-224ENST00000561268 ABCA10Q8WWZ4 1543 aa12.5□□□□□ -0.41
SPG11-224ENST00000561268 SYNJ1O43426 1573 aa12.5□□□□□ -0.41
SPG11-224ENST00000561268 AQRO60306 1485 aaKnown RBP eCLIP12.49□□□□□ -0.412e-7■■■■□ 22.7
SPG11-224ENST00000561268 MAGI1Q96QZ7 1491 aaPredicted RBP12.49□□□□□ -0.41
SPG11-224ENST00000561268 CLASP1Q7Z460 1538 aa12.48□□□□□ -0.41
SPG11-224ENST00000561268 SOGA1O94964 1423 aa12.48□□□□□ -0.41
SPG11-224ENST00000561268 ARHGEF11O15085 1522 aa12.47□□□□□ -0.41
SPG11-224ENST00000561268 SNAPC4Q5SXM2 1469 aa12.46□□□□□ -0.42
SPG11-224ENST00000561268 OSCARQ8IYS5 282 aa12.45□□□□□ -0.42
SPG11-224ENST00000561268 GRIN2BQ13224 1484 aa12.45□□□□□ -0.42
SPG11-224ENST00000561268 ADAMTS12P58397 1594 aa12.43□□□□□ -0.42
SPG11-224ENST00000561268 MAPK8IP2Q13387 824 aaPredicted RBP12.43□□□□□ -0.42
SPG11-224ENST00000561268 SYNJ2O15056 1496 aa12.41□□□□□ -0.42
SPG11-224ENST00000561268 GAPVD1Q14C86 1478 aa12.4□□□□□ -0.42
SPG11-224ENST00000561268 WRNQ14191 1432 aaPredicted RBP eCLIP12.4□□□□□ -0.42
SPG11-224ENST00000561268 DMRT2Q9Y5R5 561 aa12.4□□□□□ -0.42
SPG11-224ENST00000561268 TDRD9Q8NDG6 1382 aaKnown RBP12.4□□□□□ -0.42
SPG11-224ENST00000561268 SUPT5HO00267 1087 aaKnown RBP12.39□□□□□ -0.43
SPG11-224ENST00000561268 ERICH3Q5RHP9 1530 aa12.37□□□□□ -0.43
SPG11-224ENST00000561268 ARAP1Q96P48 1450 aa12.35□□□□□ -0.43
SPG11-224ENST00000561268 SHROOM2Q13796 1616 aa12.35□□□□□ -0.43
SPG11-224ENST00000561268 CEP170Q5SW79 1584 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms