RNA–Protein interactions for RNA: ENST00000560856.5

SNRPA1-213, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 4

Gene SNRPA1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-213ENST00000560856 NISCHQ9Y2I1 1504 aa37.26■■■■□ 3.56
SNRPA1-213ENST00000560856 CCDC180Q9P1Z9 1646 aa33.06■■■□□ 2.88
SNRPA1-213ENST00000560856 ABCC9O60706 1549 aa32.41■■■□□ 2.78
SNRPA1-213ENST00000560856 RB1CC1Q8TDY2 1594 aa31.13■■■□□ 2.57
SNRPA1-213ENST00000560856 NACADO15069 1562 aa31.12■■■□□ 2.57
SNRPA1-213ENST00000560856 DCAF8L2P0C7V8 631 aa31.09■■■□□ 2.57
SNRPA1-213ENST00000560856 ZCCHC6Q5VYS8 1495 aaKnown RBP31.03■■■□□ 2.56
SNRPA1-213ENST00000560856 MYO15BQ96JP2 1530 aa30.97■■■□□ 2.55
SNRPA1-213ENST00000560856 DCAF1Q9Y4B6 1507 aa30.83■■■□□ 2.53
SNRPA1-213ENST00000560856 UNC13AQ9UPW8 1703 aa30.43■■■□□ 2.46
SNRPA1-213ENST00000560856 PABPN1Q86U42 306 aaKnown RBP eCLIP30.33■■■□□ 2.45
SNRPA1-213ENST00000560856 BICRAQ9NZM4 1560 aa30.28■■■□□ 2.44
SNRPA1-213ENST00000560856 SCRIBQ14160 1630 aa30.17■■■□□ 2.42
SNRPA1-213ENST00000560856 DNAJC5BQ9UF47 199 aa29.9■■■□□ 2.38
SNRPA1-213ENST00000560856 SHROOM4Q9ULL8 1493 aa29.88■■■□□ 2.37
SNRPA1-213ENST00000560856 EIF4G1Q04637 1599 aaKnown RBP29.43■■■□□ 2.3
SNRPA1-213ENST00000560856 CC2D2AQ9P2K1 1620 aa29.31■■■□□ 2.28
SNRPA1-213ENST00000560856 CECR2Q9BXF3 1484 aa29.12■■■□□ 2.25
SNRPA1-213ENST00000560856 SMARCA4P51532 1647 aa28.88■■■□□ 2.21
SNRPA1-213ENST00000560856 BAZ1AQ9NRL2 1556 aaPredicted RBP28.84■■■□□ 2.21
SNRPA1-213ENST00000560856 NCAPD3P42695 1498 aa28.78■■■□□ 2.2
SNRPA1-213ENST00000560856 ATAD2BQ9ULI0 1458 aa28.78■■■□□ 2.2
SNRPA1-213ENST00000560856 MROH2BQ7Z745 1585 aa28.73■■■□□ 2.19
SNRPA1-213ENST00000560856 SMARCA2P51531 1590 aa28.67■■■□□ 2.18
SNRPA1-213ENST00000560856 PEG3Q9GZU2 1588 aa28.63■■■□□ 2.17
SNRPA1-213ENST00000560856 HMGXB3Q12766 1538 aa28.58■■■□□ 2.17
SNRPA1-213ENST00000560856 BAZ1BQ9UIG0 1483 aaKnown RBP28.48■■■□□ 2.15
SNRPA1-213ENST00000560856 RSF1Q96T23 1441 aaPredicted RBP28.42■■■□□ 2.14
SNRPA1-213ENST00000560856 WIZO95785 1651 aa28.38■■■□□ 2.13
SNRPA1-213ENST00000560856 NESP48681 1621 aa28.07■■■□□ 2.08
SNRPA1-213ENST00000560856 TOP2AP11388 1531 aaKnown RBP28.07■■■□□ 2.08
SNRPA1-213ENST00000560856 LAMC3Q9Y6N6 1575 aa27.94■■■□□ 2.06
SNRPA1-213ENST00000560856 CADPSQ9ULU8 1353 aa27.92■■■□□ 2.06
SNRPA1-213ENST00000560856 ERCC6Q03468 1493 aa27.88■■■□□ 2.05
SNRPA1-213ENST00000560856 CCDC88BA6NC98 1476 aa27.79■■■□□ 2.04
SNRPA1-213ENST00000560856 PDS5BQ9NTI5 1447 aa27.77■■■□□ 2.04
SNRPA1-213ENST00000560856 CFTRP13569 1480 aa27.76■■■□□ 2.03
SNRPA1-213ENST00000560856 KIF21AQ7Z4S6 1674 aa27.67■■■□□ 2.02
SNRPA1-213ENST00000560856 CUX2O14529 1486 aa27.64■■■□□ 2.01
SNRPA1-213ENST00000560856 SUPT5HO00267 1087 aaKnown RBP27.63■■■□□ 2.01
SNRPA1-213ENST00000560856 THOC2Q8NI27 1593 aaKnown RBP27.61■■■□□ 2.01
SNRPA1-213ENST00000560856 FANCD2Q9BXW9 1451 aa27.57■■■□□ 2
SNRPA1-213ENST00000560856 CEP164Q9UPV0 1460 aa27.51■■□□□ 1.99
SNRPA1-213ENST00000560856 MRC2Q9UBG0 1479 aa27.49■■□□□ 1.99
SNRPA1-213ENST00000560856 PRDM2Q13029 1718 aa27.42■■□□□ 1.98
SNRPA1-213ENST00000560856 WDR62O43379 1518 aa27.41■■□□□ 1.98
SNRPA1-213ENST00000560856 URB2Q14146 1524 aaKnown RBP27.32■■□□□ 1.96
SNRPA1-213ENST00000560856 TOPBP1Q92547 1522 aa27.14■■□□□ 1.94
SNRPA1-213ENST00000560856 ABCC8Q09428 1581 aa27.09■■□□□ 1.93
SNRPA1-213ENST00000560856 DNMBPQ6XZF7 1577 aa27.07■■□□□ 1.92
SNRPA1-213ENST00000560856 IFT140Q96RY7 1462 aa26.95■■□□□ 1.91
SNRPA1-213ENST00000560856 CUX1P39880 1505 aa26.95■■□□□ 1.9
SNRPA1-213ENST00000560856 POLA1P09884 1462 aaPredicted RBP26.91■■□□□ 1.9
SNRPA1-213ENST00000560856 DNAJC5Q9H3Z4 198 aa26.88■■□□□ 1.89
SNRPA1-213ENST00000560856 ZNF608Q9ULD9 1512 aaPredicted RBP26.87■■□□□ 1.89
SNRPA1-213ENST00000560856 TARBP1Q13395 1621 aaKnown RBP26.84■■□□□ 1.89
SNRPA1-213ENST00000560856 FGD5Q6ZNL6 1462 aa26.83■■□□□ 1.89
SNRPA1-213ENST00000560856 RAD54L2Q9Y4B4 1467 aa26.81■■□□□ 1.88
SNRPA1-213ENST00000560856 SOGA1O94964 1423 aa26.81■■□□□ 1.88
SNRPA1-213ENST00000560856 WRNQ14191 1432 aaPredicted RBP eCLIP26.74■■□□□ 1.87
SNRPA1-213ENST00000560856 AQRO60306 1485 aaKnown RBP eCLIP26.72■■□□□ 1.872e-6■■■□□ 18.3
SNRPA1-213ENST00000560856 EIF4G3O43432 1585 aaKnown RBP26.69■■□□□ 1.86
SNRPA1-213ENST00000560856 SYNJ1O43426 1573 aa26.67■■□□□ 1.86
SNRPA1-213ENST00000560856 TOP2BQ02880 1626 aa26.67■■□□□ 1.86
SNRPA1-213ENST00000560856 TDRD9Q8NDG6 1382 aaKnown RBP26.67■■□□□ 1.86
SNRPA1-213ENST00000560856 BIVM-ERCC5R4GMW8 1640 aa26.65■■□□□ 1.86
SNRPA1-213ENST00000560856 ABCA10Q8WWZ4 1543 aa26.59■■□□□ 1.85
SNRPA1-213ENST00000560856 WDR97A6NE52 1622 aa26.58■■□□□ 1.85
SNRPA1-213ENST00000560856 OSCARQ8IYS5 282 aa26.51■■□□□ 1.83
SNRPA1-213ENST00000560856 GAPVD1Q14C86 1478 aa26.48■■□□□ 1.83
SNRPA1-213ENST00000560856 GRIN2BQ13224 1484 aa26.47■■□□□ 1.83
SNRPA1-213ENST00000560856 ABCA5Q8WWZ7 1642 aa26.45■■□□□ 1.82
SNRPA1-213ENST00000560856 SNAPC4Q5SXM2 1469 aa26.43■■□□□ 1.82
SNRPA1-213ENST00000560856 MAGI1Q96QZ7 1491 aaPredicted RBP26.39■■□□□ 1.82
SNRPA1-213ENST00000560856 PBRM1Q86U86 1689 aa26.35■■□□□ 1.81
SNRPA1-213ENST00000560856 CHD1O14646 1710 aa26.34■■□□□ 1.81
SNRPA1-213ENST00000560856 FBLN2P98095 1184 aa26.34■■□□□ 1.81
SNRPA1-213ENST00000560856 SYNJ2O15056 1496 aa26.3■■□□□ 1.8
SNRPA1-213ENST00000560856 CHMP7Q8WUX9 453 aaPredicted RBP26.28■■□□□ 1.8
SNRPA1-213ENST00000560856 ERICH3Q5RHP9 1530 aa26.24■■□□□ 1.79
SNRPA1-213ENST00000560856 ADAMTS12P58397 1594 aa26.19■■□□□ 1.78
SNRPA1-213ENST00000560856 FHAD1B1AJZ9 1412 aa26.17■■□□□ 1.78
SNRPA1-213ENST00000560856 KIF27Q86VH2 1401 aa26.17■■□□□ 1.78
SNRPA1-213ENST00000560856 IGF1RP08069 1367 aa26.15■■□□□ 1.78
SNRPA1-213ENST00000560856 GRIN2AQ12879 1464 aa26.13■■□□□ 1.77
SNRPA1-213ENST00000560856 CLASP1Q7Z460 1538 aa26.13■■□□□ 1.77
SNRPA1-213ENST00000560856 TRIM41Q8WV44 630 aa26.08■■□□□ 1.77
SNRPA1-213ENST00000560856 ARHGEF11O15085 1522 aa26.07■■□□□ 1.76
SNRPA1-213ENST00000560856 NUP160Q12769 1436 aa26.05■■□□□ 1.76
SNRPA1-213ENST00000560856 RIMBP3CA6NJZ7 1639 aa26.05■■□□□ 1.76
SNRPA1-213ENST00000560856 RIMBP3BA6NNM3 1639 aa26.05■■□□□ 1.76
SNRPA1-213ENST00000560856 RIMBP3Q9UFD9 1639 aa26.05■■□□□ 1.76
SNRPA1-213ENST00000560856 CEP170Q5SW79 1584 aa26.01■■□□□ 1.75
SNRPA1-213ENST00000560856 RUSC2Q8N2Y8 1516 aa26■■□□□ 1.75
SNRPA1-213ENST00000560856 CUL7Q14999 1698 aa25.95■■□□□ 1.74
SNRPA1-213ENST00000560856 CARMIL1Q5VZK9 1371 aa25.95■■□□□ 1.74
SNRPA1-213ENST00000560856 ARAP1Q96P48 1450 aa25.89■■□□□ 1.73
SNRPA1-213ENST00000560856 CYB5RLQ6IPT4 315 aa25.85■■□□□ 1.73
SNRPA1-213ENST00000560856 CHIC1Q5VXU3 224 aa25.84■■□□□ 1.73
SNRPA1-213ENST00000560856 SHROOM2Q13796 1616 aa25.82■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms