RNA–Protein interactions for RNA: ENST00000560673.1

KNSTRN-211, Transcript of kinetochore localized astrin (SPAG5) binding protein, humanhuman

TSL 2

Gene KNSTRN, Length 623 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KNSTRN-211ENST00000560673 NISCHQ9Y2I1 1504 aa29.65■■■□□ 2.34
KNSTRN-211ENST00000560673 ABCC9O60706 1549 aa28.12■■■□□ 2.09
KNSTRN-211ENST00000560673 DNAJC5BQ9UF47 199 aa27.31■■□□□ 1.96
KNSTRN-211ENST00000560673 CCDC180Q9P1Z9 1646 aa27.03■■□□□ 1.92
KNSTRN-211ENST00000560673 RB1CC1Q8TDY2 1594 aa26.29■■□□□ 1.8
KNSTRN-211ENST00000560673 PABPN1Q86U42 306 aaKnown RBP eCLIP26.04■■□□□ 1.76
KNSTRN-211ENST00000560673 DNAJC5Q9H3Z4 198 aa25.89■■□□□ 1.74
KNSTRN-211ENST00000560673 NACADO15069 1562 aa25.85■■□□□ 1.73
KNSTRN-211ENST00000560673 UNC13AQ9UPW8 1703 aa25.6■■□□□ 1.69
KNSTRN-211ENST00000560673 DCAF8L2P0C7V8 631 aa25.58■■□□□ 1.69
KNSTRN-211ENST00000560673 BICRAQ9NZM4 1560 aa25.52■■□□□ 1.68
KNSTRN-211ENST00000560673 CECR2Q9BXF3 1484 aa25.45■■□□□ 1.66
KNSTRN-211ENST00000560673 CC2D2AQ9P2K1 1620 aa25.32■■□□□ 1.64
KNSTRN-211ENST00000560673 MYO15BQ96JP2 1530 aa25.14■■□□□ 1.62
KNSTRN-211ENST00000560673 SHROOM4Q9ULL8 1493 aa25.12■■□□□ 1.61
KNSTRN-211ENST00000560673 EIF4G1Q04637 1599 aaKnown RBP25.01■■□□□ 1.59
KNSTRN-211ENST00000560673 CUX2O14529 1486 aa24.68■■□□□ 1.54
KNSTRN-211ENST00000560673 SCRIBQ14160 1630 aa24.58■■□□□ 1.53
KNSTRN-211ENST00000560673 DCAF1Q9Y4B6 1507 aa24.42■■□□□ 1.5
KNSTRN-211ENST00000560673 ERCC6Q03468 1493 aa24.39■■□□□ 1.5
KNSTRN-211ENST00000560673 TRIM41Q8WV44 630 aa24.34■■□□□ 1.49
KNSTRN-211ENST00000560673 ZCCHC6Q5VYS8 1495 aaKnown RBP24.33■■□□□ 1.49
KNSTRN-211ENST00000560673 NCAPD3P42695 1498 aa23.88■■□□□ 1.41
KNSTRN-211ENST00000560673 NESP48681 1621 aa23.83■■□□□ 1.41
KNSTRN-211ENST00000560673 THOC2Q8NI27 1593 aaKnown RBP23.78■■□□□ 1.4
KNSTRN-211ENST00000560673 ATAD2BQ9ULI0 1458 aa23.66■■□□□ 1.38
KNSTRN-211ENST00000560673 HMGXB3Q12766 1538 aa23.59■■□□□ 1.37
KNSTRN-211ENST00000560673 SMARCA2P51531 1590 aa23.59■■□□□ 1.37
KNSTRN-211ENST00000560673 LAMC3Q9Y6N6 1575 aa23.51■■□□□ 1.35
KNSTRN-211ENST00000560673 PDS5BQ9NTI5 1447 aa23.46■■□□□ 1.35
KNSTRN-211ENST00000560673 KIF21AQ7Z4S6 1674 aa23.45■■□□□ 1.34
KNSTRN-211ENST00000560673 OSCARQ8IYS5 282 aa23.42■■□□□ 1.34
KNSTRN-211ENST00000560673 BAZ1AQ9NRL2 1556 aaPredicted RBP23.4■■□□□ 1.34
KNSTRN-211ENST00000560673 BAZ1BQ9UIG0 1483 aaKnown RBP23.39■■□□□ 1.34
KNSTRN-211ENST00000560673 SMARCA4P51532 1647 aa23.33■■□□□ 1.33
KNSTRN-211ENST00000560673 MRC2Q9UBG0 1479 aa23.29■■□□□ 1.32
KNSTRN-211ENST00000560673 WDR62O43379 1518 aa23.23■■□□□ 1.31
KNSTRN-211ENST00000560673 AEBP2Q6ZN18 517 aaPredicted RBP23.19■■□□□ 1.3
KNSTRN-211ENST00000560673 RIMBP3CA6NJZ7 1639 aa23.15■■□□□ 1.3
KNSTRN-211ENST00000560673 RIMBP3BA6NNM3 1639 aa23.15■■□□□ 1.3
KNSTRN-211ENST00000560673 RIMBP3Q9UFD9 1639 aa23.15■■□□□ 1.3
KNSTRN-211ENST00000560673 CADPSQ9ULU8 1353 aa23.13■■□□□ 1.29
KNSTRN-211ENST00000560673 PEG3Q9GZU2 1588 aa23.12■■□□□ 1.29
KNSTRN-211ENST00000560673 TRHP20396 242 aaPredicted RBP23.06■■□□□ 1.28
KNSTRN-211ENST00000560673 ARHGEF11O15085 1522 aa22.99■■□□□ 1.27
KNSTRN-211ENST00000560673 CEP164Q9UPV0 1460 aa22.98■■□□□ 1.27
KNSTRN-211ENST00000560673 CYB5RLQ6IPT4 315 aa22.94■■□□□ 1.26
KNSTRN-211ENST00000560673 FANCD2Q9BXW9 1451 aa22.85■■□□□ 1.25
KNSTRN-211ENST00000560673 MROH2BQ7Z745 1585 aa22.82■■□□□ 1.24
KNSTRN-211ENST00000560673 URB2Q14146 1524 aaKnown RBP22.72■■□□□ 1.23
KNSTRN-211ENST00000560673 ARAP1Q96P48 1450 aa22.68■■□□□ 1.22
KNSTRN-211ENST00000560673 CFTRP13569 1480 aa22.63■■□□□ 1.21
KNSTRN-211ENST00000560673 ZNF608Q9ULD9 1512 aaPredicted RBP22.62■■□□□ 1.21
KNSTRN-211ENST00000560673 IFT140Q96RY7 1462 aa22.57■■□□□ 1.2
KNSTRN-211ENST00000560673 RSF1Q96T23 1441 aaPredicted RBP22.53■■□□□ 1.2
KNSTRN-211ENST00000560673 WIZO95785 1651 aa22.48■■□□□ 1.19
KNSTRN-211ENST00000560673 FBLN2P98095 1184 aa22.42■■□□□ 1.18
KNSTRN-211ENST00000560673 CHD1O14646 1710 aa22.42■■□□□ 1.18
KNSTRN-211ENST00000560673 EIF4G3O43432 1585 aaKnown RBP22.42■■□□□ 1.18
KNSTRN-211ENST00000560673 ILDR1Q86SU0 546 aaPredicted RBP22.31■■□□□ 1.16
KNSTRN-211ENST00000560673 AQRO60306 1485 aaKnown RBP eCLIP22.29■■□□□ 1.162e-8■■■■□ 23.5
KNSTRN-211ENST00000560673 TOPBP1Q92547 1522 aa22.29■■□□□ 1.16
KNSTRN-211ENST00000560673 PRDM2Q13029 1718 aa22.23■■□□□ 1.15
KNSTRN-211ENST00000560673 ABCC8Q09428 1581 aa22.21■■□□□ 1.15
KNSTRN-211ENST00000560673 CLASP1Q7Z460 1538 aa22.16■■□□□ 1.14
KNSTRN-211ENST00000560673 TARBP1Q13395 1621 aaKnown RBP22.15■■□□□ 1.14
KNSTRN-211ENST00000560673 TOP2AP11388 1531 aaKnown RBP22.14■■□□□ 1.13
KNSTRN-211ENST00000560673 DNMBPQ6XZF7 1577 aa22.11■■□□□ 1.13
KNSTRN-211ENST00000560673 SYNJ1O43426 1573 aa22.09■■□□□ 1.13
KNSTRN-211ENST00000560673 CHMP7Q8WUX9 453 aaPredicted RBP22.08■■□□□ 1.13
KNSTRN-211ENST00000560673 GAPVD1Q14C86 1478 aa22.06■■□□□ 1.12
KNSTRN-211ENST00000560673 SNAPC4Q5SXM2 1469 aa22.03■■□□□ 1.12
KNSTRN-211ENST00000560673 TDRD9Q8NDG6 1382 aaKnown RBP22■■□□□ 1.11
KNSTRN-211ENST00000560673 POLA1P09884 1462 aaPredicted RBP22■■□□□ 1.11
KNSTRN-211ENST00000560673 MAGI1Q96QZ7 1491 aaPredicted RBP21.94■■□□□ 1.1
KNSTRN-211ENST00000560673 RAD54L2Q9Y4B4 1467 aa21.94■■□□□ 1.1
KNSTRN-211ENST00000560673 CCDC88BA6NC98 1476 aa21.92■■□□□ 1.1
KNSTRN-211ENST00000560673 SOGA1O94964 1423 aa21.9■■□□□ 1.1
KNSTRN-211ENST00000560673 CHIC1Q5VXU3 224 aa21.88■■□□□ 1.09
KNSTRN-211ENST00000560673 SYNJ2O15056 1496 aa21.88■■□□□ 1.09
KNSTRN-211ENST00000560673 KDM4FA0A1W2PPD8 638 aa21.87■■□□□ 1.09
KNSTRN-211ENST00000560673 WDR97A6NE52 1622 aa21.87■■□□□ 1.09
KNSTRN-211ENST00000560673 GRIN2BQ13224 1484 aa21.83■■□□□ 1.09
KNSTRN-211ENST00000560673 KIF13AQ9H1H9 1805 aa21.78■■□□□ 1.08
KNSTRN-211ENST00000560673 ERCC6L2Q5T890 1561 aa21.74■■□□□ 1.07
KNSTRN-211ENST00000560673 FGD5Q6ZNL6 1462 aa21.71■■□□□ 1.07
KNSTRN-211ENST00000560673 FAM69CQ0P6D2 419 aa21.67■■□□□ 1.06
KNSTRN-211ENST00000560673 CEP170Q5SW79 1584 aa21.62■■□□□ 1.05
KNSTRN-211ENST00000560673 PBRM1Q86U86 1689 aa21.6■■□□□ 1.05
KNSTRN-211ENST00000560673 ABCC10Q5T3U5 1492 aa21.6■■□□□ 1.05
KNSTRN-211ENST00000560673 KDM6BO15054 1643 aa21.58■■□□□ 1.05
KNSTRN-211ENST00000560673 GRIN2AQ12879 1464 aa21.54■■□□□ 1.04
KNSTRN-211ENST00000560673 NPM1P06748 294 aaKnown RBP eCLIP21.51■■□□□ 1.03
KNSTRN-211ENST00000560673 CUX1P39880 1505 aa21.5■■□□□ 1.03
KNSTRN-211ENST00000560673 NUP160Q12769 1436 aa21.5■■□□□ 1.03
KNSTRN-211ENST00000560673 SHROOM2Q13796 1616 aa21.49■■□□□ 1.03
KNSTRN-211ENST00000560673 DIP2BQ9P265 1576 aa21.48■■□□□ 1.03
KNSTRN-211ENST00000560673 HECW2Q9P2P5 1572 aa21.46■■□□□ 1.03
KNSTRN-211ENST00000560673 MAPKBP1O60336 1514 aa21.45■■□□□ 1.02
KNSTRN-211ENST00000560673 FBXO41Q8TF61 875 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms