RNA–Protein interactions for RNA: ENST00000560424.1

SMAD3-215, Transcript of SMAD family member 3, humanhuman

TSL 3

Gene SMAD3, Length 775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-215ENST00000560424 NISCHQ9Y2I1 1504 aa23.59■■□□□ 1.37
SMAD3-215ENST00000560424 ABCC9O60706 1549 aa21.91■■□□□ 1.1
SMAD3-215ENST00000560424 CCDC180Q9P1Z9 1646 aa21.4■■□□□ 1.02
SMAD3-215ENST00000560424 DNAJC5BQ9UF47 199 aa20.88■□□□□ 0.93
SMAD3-215ENST00000560424 RB1CC1Q8TDY2 1594 aa20.66■□□□□ 0.9
SMAD3-215ENST00000560424 NACADO15069 1562 aa20.37■□□□□ 0.85
SMAD3-215ENST00000560424 PABPN1Q86U42 306 aaKnown RBP eCLIP20.32■□□□□ 0.84
SMAD3-215ENST00000560424 DCAF8L2P0C7V8 631 aa20.27■□□□□ 0.84
SMAD3-215ENST00000560424 UNC13AQ9UPW8 1703 aa20.11■□□□□ 0.81
SMAD3-215ENST00000560424 BICRAQ9NZM4 1560 aa19.96■□□□□ 0.79
SMAD3-215ENST00000560424 MYO15BQ96JP2 1530 aa19.87■□□□□ 0.77
SMAD3-215ENST00000560424 CECR2Q9BXF3 1484 aa19.79■□□□□ 0.76
SMAD3-215ENST00000560424 CC2D2AQ9P2K1 1620 aa19.75■□□□□ 0.75
SMAD3-215ENST00000560424 SHROOM4Q9ULL8 1493 aa19.73■□□□□ 0.75
SMAD3-215ENST00000560424 DNAJC5Q9H3Z4 198 aa19.61■□□□□ 0.73
SMAD3-215ENST00000560424 EIF4G1Q04637 1599 aaKnown RBP19.58■□□□□ 0.73
SMAD3-215ENST00000560424 SCRIBQ14160 1630 aa19.51■□□□□ 0.71
SMAD3-215ENST00000560424 ZCCHC6Q5VYS8 1495 aaKnown RBP19.44■□□□□ 0.7
SMAD3-215ENST00000560424 DCAF1Q9Y4B6 1507 aa19.44■□□□□ 0.7
SMAD3-215ENST00000560424 CUX2O14529 1486 aa19.09■□□□□ 0.65
SMAD3-215ENST00000560424 ERCC6Q03468 1493 aa19.03■□□□□ 0.64
SMAD3-215ENST00000560424 NCAPD3P42695 1498 aa18.77■□□□□ 0.59
SMAD3-215ENST00000560424 ATAD2BQ9ULI0 1458 aa18.65■□□□□ 0.58
SMAD3-215ENST00000560424 TRIM41Q8WV44 630 aa18.65■□□□□ 0.58
SMAD3-215ENST00000560424 NESP48681 1621 aa18.64■□□□□ 0.57
SMAD3-215ENST00000560424 SMARCA2P51531 1590 aa18.62■□□□□ 0.57
SMAD3-215ENST00000560424 HMGXB3Q12766 1538 aa18.61■□□□□ 0.57
SMAD3-215ENST00000560424 THOC2Q8NI27 1593 aaKnown RBP18.55■□□□□ 0.56
SMAD3-215ENST00000560424 SMARCA4P51532 1647 aa18.52■□□□□ 0.56
SMAD3-215ENST00000560424 BAZ1BQ9UIG0 1483 aaKnown RBP18.51■□□□□ 0.55
SMAD3-215ENST00000560424 LAMC3Q9Y6N6 1575 aa18.47■□□□□ 0.55
SMAD3-215ENST00000560424 PDS5BQ9NTI5 1447 aa18.41■□□□□ 0.54
SMAD3-215ENST00000560424 KIF21AQ7Z4S6 1674 aa18.41■□□□□ 0.54
SMAD3-215ENST00000560424 BAZ1AQ9NRL2 1556 aaPredicted RBP18.39■□□□□ 0.53
SMAD3-215ENST00000560424 PEG3Q9GZU2 1588 aa18.31■□□□□ 0.52
SMAD3-215ENST00000560424 MRC2Q9UBG0 1479 aa18.26■□□□□ 0.51
SMAD3-215ENST00000560424 CADPSQ9ULU8 1353 aa18.2■□□□□ 0.5
SMAD3-215ENST00000560424 WDR62O43379 1518 aa18.2■□□□□ 0.5
SMAD3-215ENST00000560424 OSCARQ8IYS5 282 aa18.17■□□□□ 0.5
SMAD3-215ENST00000560424 MROH2BQ7Z745 1585 aa18.16■□□□□ 0.5
SMAD3-215ENST00000560424 CEP164Q9UPV0 1460 aa18.11■□□□□ 0.49
SMAD3-215ENST00000560424 FANCD2Q9BXW9 1451 aa18.02■□□□□ 0.48
SMAD3-215ENST00000560424 RIMBP3CA6NJZ7 1639 aa17.94■□□□□ 0.46
SMAD3-215ENST00000560424 RIMBP3BA6NNM3 1639 aa17.94■□□□□ 0.46
SMAD3-215ENST00000560424 RIMBP3Q9UFD9 1639 aa17.94■□□□□ 0.46
SMAD3-215ENST00000560424 WIZO95785 1651 aa17.94■□□□□ 0.46
SMAD3-215ENST00000560424 CFTRP13569 1480 aa17.88■□□□□ 0.45
SMAD3-215ENST00000560424 URB2Q14146 1524 aaKnown RBP17.86■□□□□ 0.45
SMAD3-215ENST00000560424 ARHGEF11O15085 1522 aa17.84■□□□□ 0.45
SMAD3-215ENST00000560424 TRHP20396 242 aaPredicted RBP17.82■□□□□ 0.44
SMAD3-215ENST00000560424 CYB5RLQ6IPT4 315 aa17.78■□□□□ 0.44
SMAD3-215ENST00000560424 IFT140Q96RY7 1462 aa17.75■□□□□ 0.43
SMAD3-215ENST00000560424 ZNF608Q9ULD9 1512 aaPredicted RBP17.72■□□□□ 0.43
SMAD3-215ENST00000560424 AEBP2Q6ZN18 517 aaPredicted RBP17.71■□□□□ 0.43
SMAD3-215ENST00000560424 TOP2AP11388 1531 aaKnown RBP17.7■□□□□ 0.42
SMAD3-215ENST00000560424 PRDM2Q13029 1718 aa17.69■□□□□ 0.42
SMAD3-215ENST00000560424 EIF4G3O43432 1585 aaKnown RBP17.64■□□□□ 0.41
SMAD3-215ENST00000560424 FBLN2P98095 1184 aa17.62■□□□□ 0.41
SMAD3-215ENST00000560424 ARAP1Q96P48 1450 aa17.61■□□□□ 0.41
SMAD3-215ENST00000560424 TOPBP1Q92547 1522 aa17.61■□□□□ 0.41
SMAD3-215ENST00000560424 RSF1Q96T23 1441 aaPredicted RBP17.6■□□□□ 0.41
SMAD3-215ENST00000560424 CHD1O14646 1710 aa17.6■□□□□ 0.41
SMAD3-215ENST00000560424 ABCC8Q09428 1581 aa17.57■□□□□ 0.4
SMAD3-215ENST00000560424 AQRO60306 1485 aaKnown RBP eCLIP17.52■□□□□ 0.42e-6■■■■□ 21.5
SMAD3-215ENST00000560424 DNMBPQ6XZF7 1577 aa17.51■□□□□ 0.39
SMAD3-215ENST00000560424 CCDC88BA6NC98 1476 aa17.48■□□□□ 0.39
SMAD3-215ENST00000560424 TARBP1Q13395 1621 aaKnown RBP17.45■□□□□ 0.38
SMAD3-215ENST00000560424 POLA1P09884 1462 aaPredicted RBP17.39■□□□□ 0.37
SMAD3-215ENST00000560424 CHMP7Q8WUX9 453 aaPredicted RBP17.38■□□□□ 0.37
SMAD3-215ENST00000560424 SYNJ1O43426 1573 aa17.37■□□□□ 0.37
SMAD3-215ENST00000560424 SNAPC4Q5SXM2 1469 aa17.36■□□□□ 0.37
SMAD3-215ENST00000560424 TDRD9Q8NDG6 1382 aaKnown RBP17.35■□□□□ 0.37
SMAD3-215ENST00000560424 CLASP1Q7Z460 1538 aa17.34■□□□□ 0.37
SMAD3-215ENST00000560424 RAD54L2Q9Y4B4 1467 aa17.33■□□□□ 0.37
SMAD3-215ENST00000560424 SOGA1O94964 1423 aa17.33■□□□□ 0.36
SMAD3-215ENST00000560424 WDR97A6NE52 1622 aa17.29■□□□□ 0.36
SMAD3-215ENST00000560424 MAGI1Q96QZ7 1491 aaPredicted RBP17.29■□□□□ 0.36
SMAD3-215ENST00000560424 GAPVD1Q14C86 1478 aa17.25■□□□□ 0.35
SMAD3-215ENST00000560424 GRIN2BQ13224 1484 aa17.24■□□□□ 0.35
SMAD3-215ENST00000560424 SYNJ2O15056 1496 aa17.24■□□□□ 0.35
SMAD3-215ENST00000560424 FGD5Q6ZNL6 1462 aa17.23■□□□□ 0.35
SMAD3-215ENST00000560424 PBRM1Q86U86 1689 aa17.13■□□□□ 0.33
SMAD3-215ENST00000560424 CUX1P39880 1505 aa17.1■□□□□ 0.33
SMAD3-215ENST00000560424 ERCC6L2Q5T890 1561 aa17.02■□□□□ 0.32
SMAD3-215ENST00000560424 GRIN2AQ12879 1464 aa17■□□□□ 0.31
SMAD3-215ENST00000560424 ABCA5Q8WWZ7 1642 aa16.99■□□□□ 0.31
SMAD3-215ENST00000560424 CEP170Q5SW79 1584 aa16.99■□□□□ 0.31
SMAD3-215ENST00000560424 ABCA10Q8WWZ4 1543 aa16.99■□□□□ 0.31
SMAD3-215ENST00000560424 KIF13AQ9H1H9 1805 aa16.97■□□□□ 0.31
SMAD3-215ENST00000560424 NUP160Q12769 1436 aa16.93■□□□□ 0.3
SMAD3-215ENST00000560424 ADAMTS12P58397 1594 aa16.92■□□□□ 0.3
SMAD3-215ENST00000560424 NPM1P06748 294 aaKnown RBP eCLIP16.91■□□□□ 0.3
SMAD3-215ENST00000560424 FAM69CQ0P6D2 419 aa16.91■□□□□ 0.3
SMAD3-215ENST00000560424 SHROOM2Q13796 1616 aa16.9■□□□□ 0.3
SMAD3-215ENST00000560424 FHAD1B1AJZ9 1412 aa16.87■□□□□ 0.29
SMAD3-215ENST00000560424 WRNQ14191 1432 aaPredicted RBP eCLIP16.87■□□□□ 0.29
SMAD3-215ENST00000560424 ILDR1Q86SU0 546 aaPredicted RBP16.86■□□□□ 0.29
SMAD3-215ENST00000560424 PRG4Q92954 1404 aaPredicted RBP16.86■□□□□ 0.29
SMAD3-215ENST00000560424 ABCC10Q5T3U5 1492 aa16.85■□□□□ 0.29
SMAD3-215ENST00000560424 KDM6BO15054 1643 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 772.8 ms