RNA–Protein interactions for RNA: ENST00000560414.1

IDH3A-219, Transcript of isocitrate dehydrogenase 3 (NAD(+)) alpha, humanhuman

TSL 2

Gene IDH3A, Length 559 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IDH3A-219ENST00000560414 AEBP2Q6ZN18 517 aaPredicted RBP36.69■■■■□ 3.46
IDH3A-219ENST00000560414 CHIC1Q5VXU3 224 aa36.18■■■■□ 3.38
IDH3A-219ENST00000560414 NISCHQ9Y2I1 1504 aa36.12■■■■□ 3.37
IDH3A-219ENST00000560414 CCDC180Q9P1Z9 1646 aa32.15■■■□□ 2.74
IDH3A-219ENST00000560414 ABCC9O60706 1549 aa31.89■■■□□ 2.7
IDH3A-219ENST00000560414 PHF23Q9BUL5 403 aaPredicted RBP31.85■■■□□ 2.69
IDH3A-219ENST00000560414 SENP3Q9H4L4 574 aaPredicted RBP31.13■■■□□ 2.57
IDH3A-219ENST00000560414 RB1CC1Q8TDY2 1594 aa30.45■■■□□ 2.46
IDH3A-219ENST00000560414 DCAF8L2P0C7V8 631 aa30.44■■■□□ 2.46
IDH3A-219ENST00000560414 NACADO15069 1562 aa30.33■■■□□ 2.45
IDH3A-219ENST00000560414 MYO15BQ96JP2 1530 aa30.02■■■□□ 2.4
IDH3A-219ENST00000560414 ZCCHC6Q5VYS8 1495 aaKnown RBP30■■■□□ 2.39
IDH3A-219ENST00000560414 PABPN1Q86U42 306 aaKnown RBP eCLIP29.81■■■□□ 2.36
IDH3A-219ENST00000560414 DCAF1Q9Y4B6 1507 aa29.8■■■□□ 2.36
IDH3A-219ENST00000560414 UNC13AQ9UPW8 1703 aa29.76■■■□□ 2.35
IDH3A-219ENST00000560414 DNAJC5BQ9UF47 199 aa29.61■■■□□ 2.33
IDH3A-219ENST00000560414 BICRAQ9NZM4 1560 aa29.57■■■□□ 2.32
IDH3A-219ENST00000560414 PLPPR3Q6T4P5 718 aa29.57■■■□□ 2.32
IDH3A-219ENST00000560414 SCRIBQ14160 1630 aa29.42■■■□□ 2.3
IDH3A-219ENST00000560414 SHROOM4Q9ULL8 1493 aa29.13■■■□□ 2.25
IDH3A-219ENST00000560414 FOXD1Q16676 465 aa28.83■■■□□ 2.21
IDH3A-219ENST00000560414 EIF4G1Q04637 1599 aaKnown RBP28.81■■■□□ 2.2
IDH3A-219ENST00000560414 CC2D2AQ9P2K1 1620 aa28.78■■■□□ 2.2
IDH3A-219ENST00000560414 CECR2Q9BXF3 1484 aa28.66■■■□□ 2.18
IDH3A-219ENST00000560414 SMARCA4P51532 1647 aa28.07■■■□□ 2.08
IDH3A-219ENST00000560414 NCAPD3P42695 1498 aa28.03■■■□□ 2.08
IDH3A-219ENST00000560414 ATAD2BQ9ULI0 1458 aa28.02■■■□□ 2.08
IDH3A-219ENST00000560414 ADRA2BP18089 450 aa28.02■■■□□ 2.08
IDH3A-219ENST00000560414 PPP6R1Q9UPN7 881 aa28■■■□□ 2.07
IDH3A-219ENST00000560414 BAZ1AQ9NRL2 1556 aaPredicted RBP27.99■■■□□ 2.07
IDH3A-219ENST00000560414 SMARCA2P51531 1590 aa27.92■■■□□ 2.06
IDH3A-219ENST00000560414 MROH2BQ7Z745 1585 aa27.86■■■□□ 2.05
IDH3A-219ENST00000560414 HMGXB3Q12766 1538 aa27.82■■■□□ 2.04
IDH3A-219ENST00000560414 BAZ1BQ9UIG0 1483 aaKnown RBP27.76■■■□□ 2.04
IDH3A-219ENST00000560414 PEG3Q9GZU2 1588 aa27.76■■■□□ 2.03
IDH3A-219ENST00000560414 WIZO95785 1651 aa27.54■■■□□ 2
IDH3A-219ENST00000560414 NESP48681 1621 aa27.52■■■□□ 2
IDH3A-219ENST00000560414 ERCC6Q03468 1493 aa27.47■■□□□ 1.99
IDH3A-219ENST00000560414 RSF1Q96T23 1441 aaPredicted RBP27.44■■□□□ 1.98
IDH3A-219ENST00000560414 PIAS4Q8N2W9 510 aaPredicted RBP27.3■■□□□ 1.96
IDH3A-219ENST00000560414 LAMC3Q9Y6N6 1575 aa27.3■■□□□ 1.96
IDH3A-219ENST00000560414 CUX2O14529 1486 aa27.24■■□□□ 1.95
IDH3A-219ENST00000560414 CADPSQ9ULU8 1353 aa27.22■■□□□ 1.95
IDH3A-219ENST00000560414 TOP2AP11388 1531 aaKnown RBP27.19■■□□□ 1.94
IDH3A-219ENST00000560414 PDS5BQ9NTI5 1447 aa27.16■■□□□ 1.94
IDH3A-219ENST00000560414 KIF21AQ7Z4S6 1674 aa27.11■■□□□ 1.93
IDH3A-219ENST00000560414 THOC2Q8NI27 1593 aaKnown RBP27.08■■□□□ 1.93
IDH3A-219ENST00000560414 CFTRP13569 1480 aa26.98■■□□□ 1.91
IDH3A-219ENST00000560414 CCDC88BA6NC98 1476 aa26.93■■□□□ 1.9
IDH3A-219ENST00000560414 FANCD2Q9BXW9 1451 aa26.91■■□□□ 1.9
IDH3A-219ENST00000560414 MRC2Q9UBG0 1479 aa26.9■■□□□ 1.9
IDH3A-219ENST00000560414 CEP164Q9UPV0 1460 aa26.88■■□□□ 1.89
IDH3A-219ENST00000560414 DNAJC5Q9H3Z4 198 aa26.83■■□□□ 1.89
IDH3A-219ENST00000560414 WDR62O43379 1518 aa26.8■■□□□ 1.88
IDH3A-219ENST00000560414 URB2Q14146 1524 aaKnown RBP26.67■■□□□ 1.86
IDH3A-219ENST00000560414 PRDM2Q13029 1718 aa26.66■■□□□ 1.86
IDH3A-219ENST00000560414 SUPT5HO00267 1087 aaKnown RBP26.62■■□□□ 1.85
IDH3A-219ENST00000560414 MSH5O43196 834 aa26.48■■□□□ 1.83
IDH3A-219ENST00000560414 TOPBP1Q92547 1522 aa26.44■■□□□ 1.82
IDH3A-219ENST00000560414 ABCC8Q09428 1581 aa26.37■■□□□ 1.81
IDH3A-219ENST00000560414 DNMBPQ6XZF7 1577 aa26.35■■□□□ 1.81
IDH3A-219ENST00000560414 IFT140Q96RY7 1462 aa26.33■■□□□ 1.81
IDH3A-219ENST00000560414 ZNF608Q9ULD9 1512 aaPredicted RBP26.29■■□□□ 1.8
IDH3A-219ENST00000560414 POLA1P09884 1462 aaPredicted RBP26.2■■□□□ 1.78
IDH3A-219ENST00000560414 TARBP1Q13395 1621 aaKnown RBP26.15■■□□□ 1.78
IDH3A-219ENST00000560414 CUX1P39880 1505 aa26.14■■□□□ 1.78
IDH3A-219ENST00000560414 RAD54L2Q9Y4B4 1467 aa26.14■■□□□ 1.78
IDH3A-219ENST00000560414 OSCARQ8IYS5 282 aa26.13■■□□□ 1.77
IDH3A-219ENST00000560414 AQRO60306 1485 aaKnown RBP eCLIP26.12■■□□□ 1.77
IDH3A-219ENST00000560414 SOGA1O94964 1423 aa26.11■■□□□ 1.77
IDH3A-219ENST00000560414 EIF4G3O43432 1585 aaKnown RBP26.11■■□□□ 1.77
IDH3A-219ENST00000560414 FGD5Q6ZNL6 1462 aa26.11■■□□□ 1.77
IDH3A-219ENST00000560414 PPP4R3CPQ6ZMV5 832 aa26.09■■□□□ 1.77
IDH3A-219ENST00000560414 TDRD9Q8NDG6 1382 aaKnown RBP26.04■■□□□ 1.76
IDH3A-219ENST00000560414 FBLN2P98095 1184 aa25.9■■□□□ 1.74
IDH3A-219ENST00000560414 TRIM41Q8WV44 630 aa25.88■■□□□ 1.73
IDH3A-219ENST00000560414 WRNQ14191 1432 aaPredicted RBP eCLIP25.87■■□□□ 1.73
IDH3A-219ENST00000560414 KCNA4P22459 653 aa25.86■■□□□ 1.73
IDH3A-219ENST00000560414 WDR97A6NE52 1622 aa25.85■■□□□ 1.73
IDH3A-219ENST00000560414 SNAPC4Q5SXM2 1469 aa25.84■■□□□ 1.73
IDH3A-219ENST00000560414 CHD1O14646 1710 aa25.83■■□□□ 1.73
IDH3A-219ENST00000560414 SYNJ1O43426 1573 aa25.82■■□□□ 1.72
IDH3A-219ENST00000560414 ABCA10Q8WWZ4 1543 aa25.81■■□□□ 1.72
IDH3A-219ENST00000560414 GRIN2BQ13224 1484 aa25.8■■□□□ 1.72
IDH3A-219ENST00000560414 TOP2BQ02880 1626 aa25.8■■□□□ 1.72
IDH3A-219ENST00000560414 GAPVD1Q14C86 1478 aa25.79■■□□□ 1.72
IDH3A-219ENST00000560414 BIVM-ERCC5R4GMW8 1640 aa25.78■■□□□ 1.72
IDH3A-219ENST00000560414 CHMP7Q8WUX9 453 aaPredicted RBP25.75■■□□□ 1.71
IDH3A-219ENST00000560414 MAGI1Q96QZ7 1491 aaPredicted RBP25.74■■□□□ 1.71
IDH3A-219ENST00000560414 ABCA5Q8WWZ7 1642 aa25.71■■□□□ 1.71
IDH3A-219ENST00000560414 RIMBP3CA6NJZ7 1639 aa25.7■■□□□ 1.71
IDH3A-219ENST00000560414 RIMBP3BA6NNM3 1639 aa25.7■■□□□ 1.71
IDH3A-219ENST00000560414 RIMBP3Q9UFD9 1639 aa25.7■■□□□ 1.71
IDH3A-219ENST00000560414 PBRM1Q86U86 1689 aa25.7■■□□□ 1.7
IDH3A-219ENST00000560414 ARHGEF11O15085 1522 aa25.68■■□□□ 1.7
IDH3A-219ENST00000560414 SCAF1Q9H7N4 1312 aaKnown RBP25.67■■□□□ 1.7
IDH3A-219ENST00000560414 SYNJ2O15056 1496 aa25.66■■□□□ 1.7
IDH3A-219ENST00000560414 CLASP1Q7Z460 1538 aa25.55■■□□□ 1.68
IDH3A-219ENST00000560414 NCBP3Q53F19 620 aaKnown RBP25.54■■□□□ 1.68
IDH3A-219ENST00000560414 CYB5RLQ6IPT4 315 aa25.54■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 216.8 ms