RNA–Protein interactions for RNA: ENST00000560383.5

SNRPA1-210, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 4

Gene SNRPA1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-210ENST00000560383 NISCHQ9Y2I1 1504 aa37.58■■■■□ 3.61
SNRPA1-210ENST00000560383 CCDC180Q9P1Z9 1646 aa33.77■■■■□ 3
SNRPA1-210ENST00000560383 ABCC9O60706 1549 aa33.39■■■□□ 2.94
SNRPA1-210ENST00000560383 RB1CC1Q8TDY2 1594 aa31.99■■■□□ 2.71
SNRPA1-210ENST00000560383 NACADO15069 1562 aa31.83■■■□□ 2.69
SNRPA1-210ENST00000560383 MYO15BQ96JP2 1530 aa31.52■■■□□ 2.64
SNRPA1-210ENST00000560383 DCAF8L2P0C7V8 631 aa31.39■■■□□ 2.62
SNRPA1-210ENST00000560383 UNC13AQ9UPW8 1703 aa31.29■■■□□ 2.6
SNRPA1-210ENST00000560383 ZCCHC6Q5VYS8 1495 aaKnown RBP31.21■■■□□ 2.59
SNRPA1-210ENST00000560383 DCAF1Q9Y4B6 1507 aa31.15■■■□□ 2.58
SNRPA1-210ENST00000560383 DNAJC5BQ9UF47 199 aa31.1■■■□□ 2.57
SNRPA1-210ENST00000560383 PABPN1Q86U42 306 aaKnown RBP eCLIP31.03■■■□□ 2.56
SNRPA1-210ENST00000560383 BICRAQ9NZM4 1560 aa31.03■■■□□ 2.56
SNRPA1-210ENST00000560383 SHROOM4Q9ULL8 1493 aa30.77■■■□□ 2.52
SNRPA1-210ENST00000560383 SCRIBQ14160 1630 aa30.64■■■□□ 2.5
SNRPA1-210ENST00000560383 EIF4G1Q04637 1599 aaKnown RBP30.26■■■□□ 2.43
SNRPA1-210ENST00000560383 CC2D2AQ9P2K1 1620 aa30.25■■■□□ 2.43
SNRPA1-210ENST00000560383 CECR2Q9BXF3 1484 aa30.12■■■□□ 2.41
SNRPA1-210ENST00000560383 NCAPD3P42695 1498 aa29.35■■■□□ 2.29
SNRPA1-210ENST00000560383 SMARCA4P51532 1647 aa29.31■■■□□ 2.28
SNRPA1-210ENST00000560383 ATAD2BQ9ULI0 1458 aa29.24■■■□□ 2.27
SNRPA1-210ENST00000560383 SMARCA2P51531 1590 aa29.24■■■□□ 2.27
SNRPA1-210ENST00000560383 HMGXB3Q12766 1538 aa29.2■■■□□ 2.27
SNRPA1-210ENST00000560383 BAZ1AQ9NRL2 1556 aaPredicted RBP29.2■■■□□ 2.26
SNRPA1-210ENST00000560383 PEG3Q9GZU2 1588 aa29.09■■■□□ 2.25
SNRPA1-210ENST00000560383 BAZ1BQ9UIG0 1483 aaKnown RBP28.98■■■□□ 2.23
SNRPA1-210ENST00000560383 MROH2BQ7Z745 1585 aa28.92■■■□□ 2.22
SNRPA1-210ENST00000560383 ERCC6Q03468 1493 aa28.86■■■□□ 2.21
SNRPA1-210ENST00000560383 CUX2O14529 1486 aa28.85■■■□□ 2.21
SNRPA1-210ENST00000560383 NESP48681 1621 aa28.74■■■□□ 2.19
SNRPA1-210ENST00000560383 LAMC3Q9Y6N6 1575 aa28.71■■■□□ 2.19
SNRPA1-210ENST00000560383 WIZO95785 1651 aa28.58■■■□□ 2.17
SNRPA1-210ENST00000560383 THOC2Q8NI27 1593 aaKnown RBP28.54■■■□□ 2.16
SNRPA1-210ENST00000560383 DNAJC5Q9H3Z4 198 aa28.5■■■□□ 2.15
SNRPA1-210ENST00000560383 PDS5BQ9NTI5 1447 aa28.47■■■□□ 2.15
SNRPA1-210ENST00000560383 KIF21AQ7Z4S6 1674 aa28.47■■■□□ 2.15
SNRPA1-210ENST00000560383 CADPSQ9ULU8 1353 aa28.41■■■□□ 2.14
SNRPA1-210ENST00000560383 RSF1Q96T23 1441 aaPredicted RBP28.37■■■□□ 2.13
SNRPA1-210ENST00000560383 TOP2AP11388 1531 aaKnown RBP28.3■■■□□ 2.12
SNRPA1-210ENST00000560383 MRC2Q9UBG0 1479 aa28.22■■■□□ 2.11
SNRPA1-210ENST00000560383 WDR62O43379 1518 aa28.18■■■□□ 2.1
SNRPA1-210ENST00000560383 CFTRP13569 1480 aa28.16■■■□□ 2.1
SNRPA1-210ENST00000560383 CEP164Q9UPV0 1460 aa28.15■■■□□ 2.1
SNRPA1-210ENST00000560383 FANCD2Q9BXW9 1451 aa28.1■■■□□ 2.09
SNRPA1-210ENST00000560383 PRDM2Q13029 1718 aa28.01■■■□□ 2.07
SNRPA1-210ENST00000560383 AEBP2Q6ZN18 517 aaPredicted RBP27.98■■■□□ 2.07
SNRPA1-210ENST00000560383 CCDC88BA6NC98 1476 aa27.89■■■□□ 2.06
SNRPA1-210ENST00000560383 URB2Q14146 1524 aaKnown RBP27.86■■■□□ 2.05
SNRPA1-210ENST00000560383 ABCC8Q09428 1581 aa27.6■■■□□ 2.01
SNRPA1-210ENST00000560383 TOPBP1Q92547 1522 aa27.6■■■□□ 2.01
SNRPA1-210ENST00000560383 IFT140Q96RY7 1462 aa27.57■■■□□ 2
SNRPA1-210ENST00000560383 DNMBPQ6XZF7 1577 aa27.56■■■□□ 2
SNRPA1-210ENST00000560383 ZNF608Q9ULD9 1512 aaPredicted RBP27.45■■□□□ 1.98
SNRPA1-210ENST00000560383 OSCARQ8IYS5 282 aa27.42■■□□□ 1.98
SNRPA1-210ENST00000560383 EIF4G3O43432 1585 aaKnown RBP27.4■■□□□ 1.98
SNRPA1-210ENST00000560383 TARBP1Q13395 1621 aaKnown RBP27.38■■□□□ 1.97
SNRPA1-210ENST00000560383 SUPT5HO00267 1087 aaKnown RBP27.36■■□□□ 1.97
SNRPA1-210ENST00000560383 POLA1P09884 1462 aaPredicted RBP27.33■■□□□ 1.97
SNRPA1-210ENST00000560383 TRIM41Q8WV44 630 aa27.22■■□□□ 1.95
SNRPA1-210ENST00000560383 WDR97A6NE52 1622 aa27.22■■□□□ 1.95
SNRPA1-210ENST00000560383 AQRO60306 1485 aaKnown RBP eCLIP27.2■■□□□ 1.958e-7■■□□□ 14.1
SNRPA1-210ENST00000560383 CUX1P39880 1505 aa27.18■■□□□ 1.94
SNRPA1-210ENST00000560383 FGD5Q6ZNL6 1462 aa27.17■■□□□ 1.94
SNRPA1-210ENST00000560383 CHD1O14646 1710 aa27.16■■□□□ 1.94
SNRPA1-210ENST00000560383 SOGA1O94964 1423 aa27.16■■□□□ 1.94
SNRPA1-210ENST00000560383 RAD54L2Q9Y4B4 1467 aa27.15■■□□□ 1.94
SNRPA1-210ENST00000560383 CHIC1Q5VXU3 224 aa27.14■■□□□ 1.94
SNRPA1-210ENST00000560383 RIMBP3CA6NJZ7 1639 aa27.14■■□□□ 1.94
SNRPA1-210ENST00000560383 RIMBP3BA6NNM3 1639 aa27.14■■□□□ 1.94
SNRPA1-210ENST00000560383 RIMBP3Q9UFD9 1639 aa27.14■■□□□ 1.94
SNRPA1-210ENST00000560383 ARHGEF11O15085 1522 aa27.06■■□□□ 1.92
SNRPA1-210ENST00000560383 TDRD9Q8NDG6 1382 aaKnown RBP27.04■■□□□ 1.92
SNRPA1-210ENST00000560383 SNAPC4Q5SXM2 1469 aa26.99■■□□□ 1.91
SNRPA1-210ENST00000560383 MAGI1Q96QZ7 1491 aaPredicted RBP26.99■■□□□ 1.91
SNRPA1-210ENST00000560383 GRIN2BQ13224 1484 aa26.96■■□□□ 1.91
SNRPA1-210ENST00000560383 PBRM1Q86U86 1689 aa26.92■■□□□ 1.9
SNRPA1-210ENST00000560383 ABCA10Q8WWZ4 1543 aa26.91■■□□□ 1.9
SNRPA1-210ENST00000560383 FBLN2P98095 1184 aa26.9■■□□□ 1.9
SNRPA1-210ENST00000560383 ABCA5Q8WWZ7 1642 aa26.89■■□□□ 1.9
SNRPA1-210ENST00000560383 SYNJ2O15056 1496 aa26.87■■□□□ 1.89
SNRPA1-210ENST00000560383 GAPVD1Q14C86 1478 aa26.87■■□□□ 1.89
SNRPA1-210ENST00000560383 BIVM-ERCC5R4GMW8 1640 aa26.87■■□□□ 1.89
SNRPA1-210ENST00000560383 CLASP1Q7Z460 1538 aa26.86■■□□□ 1.89
SNRPA1-210ENST00000560383 SYNJ1O43426 1573 aa26.86■■□□□ 1.89
SNRPA1-210ENST00000560383 TOP2BQ02880 1626 aa26.84■■□□□ 1.89
SNRPA1-210ENST00000560383 CHMP7Q8WUX9 453 aaPredicted RBP26.8■■□□□ 1.88
SNRPA1-210ENST00000560383 WRNQ14191 1432 aaPredicted RBP eCLIP26.8■■□□□ 1.88
SNRPA1-210ENST00000560383 ARAP1Q96P48 1450 aa26.8■■□□□ 1.88
SNRPA1-210ENST00000560383 CYB5RLQ6IPT4 315 aa26.71■■□□□ 1.87
SNRPA1-210ENST00000560383 ADAMTS12P58397 1594 aa26.67■■□□□ 1.86
SNRPA1-210ENST00000560383 GRIN2AQ12879 1464 aa26.62■■□□□ 1.85
SNRPA1-210ENST00000560383 ERICH3Q5RHP9 1530 aa26.6■■□□□ 1.85
SNRPA1-210ENST00000560383 FHAD1B1AJZ9 1412 aa26.55■■□□□ 1.84
SNRPA1-210ENST00000560383 NUP160Q12769 1436 aa26.54■■□□□ 1.84
SNRPA1-210ENST00000560383 CEP170Q5SW79 1584 aa26.52■■□□□ 1.84
SNRPA1-210ENST00000560383 SHROOM2Q13796 1616 aa26.45■■□□□ 1.82
SNRPA1-210ENST00000560383 ERCC6L2Q5T890 1561 aa26.37■■□□□ 1.81
SNRPA1-210ENST00000560383 TRHP20396 242 aaPredicted RBP26.35■■□□□ 1.81
SNRPA1-210ENST00000560383 RUSC2Q8N2Y8 1516 aa26.29■■□□□ 1.8
SNRPA1-210ENST00000560383 CUL7Q14999 1698 aa26.28■■□□□ 1.8
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms