RNA–Protein interactions for RNA: ENST00000560314.1

LINC02253-202, Transcript of long intergenic non-protein coding RNA 2253, humanhuman

TSL 5 BASIC

Gene LINC02253, Length 565 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02253-202ENST00000560314 NISCHQ9Y2I1 1504 aa28.22■■■□□ 2.11
LINC02253-202ENST00000560314 CCDC180Q9P1Z9 1646 aa25.46■■□□□ 1.67
LINC02253-202ENST00000560314 ABCC9O60706 1549 aa25.37■■□□□ 1.65
LINC02253-202ENST00000560314 RB1CC1Q8TDY2 1594 aa24.23■■□□□ 1.47
LINC02253-202ENST00000560314 NACADO15069 1562 aa24.06■■□□□ 1.44
LINC02253-202ENST00000560314 DNAJC5BQ9UF47 199 aa23.77■■□□□ 1.4
LINC02253-202ENST00000560314 MYO15BQ96JP2 1530 aa23.74■■□□□ 1.39
LINC02253-202ENST00000560314 UNC13AQ9UPW8 1703 aa23.67■■□□□ 1.38
LINC02253-202ENST00000560314 DCAF8L2P0C7V8 631 aa23.67■■□□□ 1.38
LINC02253-202ENST00000560314 PABPN1Q86U42 306 aaKnown RBP eCLIP23.52■■□□□ 1.36
LINC02253-202ENST00000560314 BICRAQ9NZM4 1560 aa23.48■■□□□ 1.35
LINC02253-202ENST00000560314 ZCCHC6Q5VYS8 1495 aaKnown RBP23.4■■□□□ 1.34
LINC02253-202ENST00000560314 DCAF1Q9Y4B6 1507 aa23.38■■□□□ 1.33
LINC02253-202ENST00000560314 SHROOM4Q9ULL8 1493 aa23.3■■□□□ 1.32
LINC02253-202ENST00000560314 SCRIBQ14160 1630 aa23.08■■□□□ 1.28
LINC02253-202ENST00000560314 CC2D2AQ9P2K1 1620 aa22.98■■□□□ 1.27
LINC02253-202ENST00000560314 EIF4G1Q04637 1599 aaKnown RBP22.93■■□□□ 1.26
LINC02253-202ENST00000560314 CECR2Q9BXF3 1484 aa22.91■■□□□ 1.26
LINC02253-202ENST00000560314 NCAPD3P42695 1498 aa22.16■■□□□ 1.14
LINC02253-202ENST00000560314 ATAD2BQ9ULI0 1458 aa22.07■■□□□ 1.12
LINC02253-202ENST00000560314 SMARCA2P51531 1590 aa22.06■■□□□ 1.12
LINC02253-202ENST00000560314 SMARCA4P51532 1647 aa22.06■■□□□ 1.12
LINC02253-202ENST00000560314 HMGXB3Q12766 1538 aa22.06■■□□□ 1.12
LINC02253-202ENST00000560314 CUX2O14529 1486 aa22.02■■□□□ 1.12
LINC02253-202ENST00000560314 DNAJC5Q9H3Z4 198 aa21.97■■□□□ 1.11
LINC02253-202ENST00000560314 ERCC6Q03468 1493 aa21.96■■□□□ 1.11
LINC02253-202ENST00000560314 BAZ1AQ9NRL2 1556 aaPredicted RBP21.95■■□□□ 1.11
LINC02253-202ENST00000560314 PEG3Q9GZU2 1588 aa21.89■■□□□ 1.09
LINC02253-202ENST00000560314 BAZ1BQ9UIG0 1483 aaKnown RBP21.86■■□□□ 1.09
LINC02253-202ENST00000560314 AEBP2Q6ZN18 517 aaPredicted RBP21.82■■□□□ 1.08
LINC02253-202ENST00000560314 NESP48681 1621 aa21.76■■□□□ 1.07
LINC02253-202ENST00000560314 LAMC3Q9Y6N6 1575 aa21.72■■□□□ 1.07
LINC02253-202ENST00000560314 MROH2BQ7Z745 1585 aa21.7■■□□□ 1.06
LINC02253-202ENST00000560314 THOC2Q8NI27 1593 aaKnown RBP21.66■■□□□ 1.06
LINC02253-202ENST00000560314 KIF21AQ7Z4S6 1674 aa21.56■■□□□ 1.04
LINC02253-202ENST00000560314 PDS5BQ9NTI5 1447 aa21.55■■□□□ 1.04
LINC02253-202ENST00000560314 CADPSQ9ULU8 1353 aa21.46■■□□□ 1.03
LINC02253-202ENST00000560314 WIZO95785 1651 aa21.44■■□□□ 1.02
LINC02253-202ENST00000560314 MRC2Q9UBG0 1479 aa21.38■■□□□ 1.01
LINC02253-202ENST00000560314 WDR62O43379 1518 aa21.35■■□□□ 1.01
LINC02253-202ENST00000560314 CEP164Q9UPV0 1460 aa21.28■■□□□ 1
LINC02253-202ENST00000560314 TOP2AP11388 1531 aaKnown RBP21.23■□□□□ 0.99
LINC02253-202ENST00000560314 CFTRP13569 1480 aa21.22■□□□□ 0.99
LINC02253-202ENST00000560314 FANCD2Q9BXW9 1451 aa21.22■□□□□ 0.99
LINC02253-202ENST00000560314 RSF1Q96T23 1441 aaPredicted RBP21.21■□□□□ 0.99
LINC02253-202ENST00000560314 PRDM2Q13029 1718 aa21.11■□□□□ 0.97
LINC02253-202ENST00000560314 URB2Q14146 1524 aaKnown RBP21.04■□□□□ 0.96
LINC02253-202ENST00000560314 CCDC88BA6NC98 1476 aa20.91■□□□□ 0.94
LINC02253-202ENST00000560314 TRIM41Q8WV44 630 aa20.91■□□□□ 0.94
LINC02253-202ENST00000560314 OSCARQ8IYS5 282 aa20.88■□□□□ 0.93
LINC02253-202ENST00000560314 IFT140Q96RY7 1462 aa20.86■□□□□ 0.93
LINC02253-202ENST00000560314 ABCC8Q09428 1581 aa20.82■□□□□ 0.92
LINC02253-202ENST00000560314 TOPBP1Q92547 1522 aa20.82■□□□□ 0.92
LINC02253-202ENST00000560314 DNMBPQ6XZF7 1577 aa20.77■□□□□ 0.92
LINC02253-202ENST00000560314 ZNF608Q9ULD9 1512 aaPredicted RBP20.77■□□□□ 0.92
LINC02253-202ENST00000560314 EIF4G3O43432 1585 aaKnown RBP20.72■□□□□ 0.91
LINC02253-202ENST00000560314 RIMBP3CA6NJZ7 1639 aa20.68■□□□□ 0.9
LINC02253-202ENST00000560314 RIMBP3BA6NNM3 1639 aa20.68■□□□□ 0.9
LINC02253-202ENST00000560314 RIMBP3Q9UFD9 1639 aa20.68■□□□□ 0.9
LINC02253-202ENST00000560314 TARBP1Q13395 1621 aaKnown RBP20.66■□□□□ 0.9
LINC02253-202ENST00000560314 ARHGEF11O15085 1522 aa20.62■□□□□ 0.89
LINC02253-202ENST00000560314 POLA1P09884 1462 aaPredicted RBP20.6■□□□□ 0.89
LINC02253-202ENST00000560314 CHD1O14646 1710 aa20.58■□□□□ 0.88
LINC02253-202ENST00000560314 WDR97A6NE52 1622 aa20.55■□□□□ 0.88
LINC02253-202ENST00000560314 AQRO60306 1485 aaKnown RBP eCLIP20.55■□□□□ 0.88
LINC02253-202ENST00000560314 SOGA1O94964 1423 aa20.46■□□□□ 0.87
LINC02253-202ENST00000560314 RAD54L2Q9Y4B4 1467 aa20.46■□□□□ 0.87
LINC02253-202ENST00000560314 FGD5Q6ZNL6 1462 aa20.44■□□□□ 0.86
LINC02253-202ENST00000560314 CUX1P39880 1505 aa20.42■□□□□ 0.86
LINC02253-202ENST00000560314 SNAPC4Q5SXM2 1469 aa20.39■□□□□ 0.85
LINC02253-202ENST00000560314 MAGI1Q96QZ7 1491 aaPredicted RBP20.39■□□□□ 0.85
LINC02253-202ENST00000560314 TDRD9Q8NDG6 1382 aaKnown RBP20.39■□□□□ 0.85
LINC02253-202ENST00000560314 ARAP1Q96P48 1450 aa20.38■□□□□ 0.85
LINC02253-202ENST00000560314 FBLN2P98095 1184 aa20.38■□□□□ 0.85
LINC02253-202ENST00000560314 SYNJ1O43426 1573 aa20.35■□□□□ 0.85
LINC02253-202ENST00000560314 CYB5RLQ6IPT4 315 aa20.35■□□□□ 0.85
LINC02253-202ENST00000560314 CLASP1Q7Z460 1538 aa20.35■□□□□ 0.85
LINC02253-202ENST00000560314 GRIN2BQ13224 1484 aa20.35■□□□□ 0.85
LINC02253-202ENST00000560314 PBRM1Q86U86 1689 aa20.3■□□□□ 0.84
LINC02253-202ENST00000560314 SYNJ2O15056 1496 aa20.3■□□□□ 0.84
LINC02253-202ENST00000560314 CHMP7Q8WUX9 453 aaPredicted RBP20.26■□□□□ 0.83
LINC02253-202ENST00000560314 ABCA5Q8WWZ7 1642 aa20.25■□□□□ 0.83
LINC02253-202ENST00000560314 ABCA10Q8WWZ4 1543 aa20.25■□□□□ 0.83
LINC02253-202ENST00000560314 GAPVD1Q14C86 1478 aa20.24■□□□□ 0.83
LINC02253-202ENST00000560314 CHIC1Q5VXU3 224 aa20.19■□□□□ 0.82
LINC02253-202ENST00000560314 TRHP20396 242 aaPredicted RBP20.14■□□□□ 0.81
LINC02253-202ENST00000560314 BIVM-ERCC5R4GMW8 1640 aa20.13■□□□□ 0.81
LINC02253-202ENST00000560314 WRNQ14191 1432 aaPredicted RBP eCLIP20.12■□□□□ 0.81
LINC02253-202ENST00000560314 TOP2BQ02880 1626 aa20.11■□□□□ 0.81
LINC02253-202ENST00000560314 ADAMTS12P58397 1594 aa20.09■□□□□ 0.81
LINC02253-202ENST00000560314 SUPT5HO00267 1087 aaKnown RBP20.09■□□□□ 0.81
LINC02253-202ENST00000560314 GRIN2AQ12879 1464 aa20.09■□□□□ 0.81
LINC02253-202ENST00000560314 NUP160Q12769 1436 aa20.03■□□□□ 0.8
LINC02253-202ENST00000560314 ERICH3Q5RHP9 1530 aa20.02■□□□□ 0.79
LINC02253-202ENST00000560314 CEP170Q5SW79 1584 aa20■□□□□ 0.79
LINC02253-202ENST00000560314 FHAD1B1AJZ9 1412 aa20■□□□□ 0.79
LINC02253-202ENST00000560314 SHROOM2Q13796 1616 aa19.98■□□□□ 0.79
LINC02253-202ENST00000560314 ERCC6L2Q5T890 1561 aa19.94■□□□□ 0.78
LINC02253-202ENST00000560314 RUSC2Q8N2Y8 1516 aa19.82■□□□□ 0.76
LINC02253-202ENST00000560314 PRG4Q92954 1404 aaPredicted RBP19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms