RNA–Protein interactions for RNA: ENST00000559715.1

HERC1-204, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 2

Gene HERC1, Length 495 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-204ENST00000559715 NISCHQ9Y2I1 1504 aa28.31■■■□□ 2.12
HERC1-204ENST00000559715 ABCC9O60706 1549 aa25.49■■□□□ 1.67
HERC1-204ENST00000559715 CCDC180Q9P1Z9 1646 aa25.44■■□□□ 1.66
HERC1-204ENST00000559715 RB1CC1Q8TDY2 1594 aa24.2■■□□□ 1.47
HERC1-204ENST00000559715 DNAJC5BQ9UF47 199 aa24.15■■□□□ 1.46
HERC1-204ENST00000559715 NACADO15069 1562 aa24.04■■□□□ 1.44
HERC1-204ENST00000559715 UNC13AQ9UPW8 1703 aa23.82■■□□□ 1.4
HERC1-204ENST00000559715 DCAF8L2P0C7V8 631 aa23.76■■□□□ 1.39
HERC1-204ENST00000559715 MYO15BQ96JP2 1530 aa23.74■■□□□ 1.39
HERC1-204ENST00000559715 PABPN1Q86U42 306 aaKnown RBP eCLIP23.71■■□□□ 1.39
HERC1-204ENST00000559715 BICRAQ9NZM4 1560 aa23.66■■□□□ 1.38
HERC1-204ENST00000559715 ZCCHC6Q5VYS8 1495 aaKnown RBP23.44■■□□□ 1.34
HERC1-204ENST00000559715 DCAF1Q9Y4B6 1507 aa23.39■■□□□ 1.34
HERC1-204ENST00000559715 SHROOM4Q9ULL8 1493 aa23.18■■□□□ 1.3
HERC1-204ENST00000559715 SCRIBQ14160 1630 aa23.13■■□□□ 1.29
HERC1-204ENST00000559715 CC2D2AQ9P2K1 1620 aa23.07■■□□□ 1.28
HERC1-204ENST00000559715 EIF4G1Q04637 1599 aaKnown RBP22.99■■□□□ 1.27
HERC1-204ENST00000559715 CECR2Q9BXF3 1484 aa22.97■■□□□ 1.27
HERC1-204ENST00000559715 NCAPD3P42695 1498 aa22.24■■□□□ 1.15
HERC1-204ENST00000559715 DNAJC5Q9H3Z4 198 aa22.15■■□□□ 1.14
HERC1-204ENST00000559715 ATAD2BQ9ULI0 1458 aa22.15■■□□□ 1.14
HERC1-204ENST00000559715 SMARCA4P51532 1647 aa22.1■■□□□ 1.13
HERC1-204ENST00000559715 HMGXB3Q12766 1538 aa22.04■■□□□ 1.12
HERC1-204ENST00000559715 SMARCA2P51531 1590 aa22.02■■□□□ 1.12
HERC1-204ENST00000559715 CUX2O14529 1486 aa22■■□□□ 1.11
HERC1-204ENST00000559715 NESP48681 1621 aa21.93■■□□□ 1.1
HERC1-204ENST00000559715 PEG3Q9GZU2 1588 aa21.93■■□□□ 1.1
HERC1-204ENST00000559715 BAZ1AQ9NRL2 1556 aaPredicted RBP21.92■■□□□ 1.1
HERC1-204ENST00000559715 ERCC6Q03468 1493 aa21.91■■□□□ 1.1
HERC1-204ENST00000559715 BAZ1BQ9UIG0 1483 aaKnown RBP21.85■■□□□ 1.09
HERC1-204ENST00000559715 MROH2BQ7Z745 1585 aa21.83■■□□□ 1.09
HERC1-204ENST00000559715 THOC2Q8NI27 1593 aaKnown RBP21.74■■□□□ 1.07
HERC1-204ENST00000559715 LAMC3Q9Y6N6 1575 aa21.71■■□□□ 1.07
HERC1-204ENST00000559715 KIF21AQ7Z4S6 1674 aa21.65■■□□□ 1.06
HERC1-204ENST00000559715 WIZO95785 1651 aa21.56■■□□□ 1.04
HERC1-204ENST00000559715 PDS5BQ9NTI5 1447 aa21.54■■□□□ 1.04
HERC1-204ENST00000559715 CADPSQ9ULU8 1353 aa21.52■■□□□ 1.04
HERC1-204ENST00000559715 AEBP2Q6ZN18 517 aaPredicted RBP21.39■■□□□ 1.01
HERC1-204ENST00000559715 WDR62O43379 1518 aa21.39■■□□□ 1.01
HERC1-204ENST00000559715 MRC2Q9UBG0 1479 aa21.39■■□□□ 1.01
HERC1-204ENST00000559715 RSF1Q96T23 1441 aaPredicted RBP21.33■■□□□ 1.01
HERC1-204ENST00000559715 CFTRP13569 1480 aa21.28■■□□□ 1
HERC1-204ENST00000559715 FANCD2Q9BXW9 1451 aa21.26■□□□□ 0.99
HERC1-204ENST00000559715 CEP164Q9UPV0 1460 aa21.26■□□□□ 0.99
HERC1-204ENST00000559715 TOP2AP11388 1531 aaKnown RBP21.24■□□□□ 0.99
HERC1-204ENST00000559715 URB2Q14146 1524 aaKnown RBP21.15■□□□□ 0.98
HERC1-204ENST00000559715 PRDM2Q13029 1718 aa21.08■□□□□ 0.97
HERC1-204ENST00000559715 CHIC1Q5VXU3 224 aa21.04■□□□□ 0.96
HERC1-204ENST00000559715 CCDC88BA6NC98 1476 aa21.03■□□□□ 0.96
HERC1-204ENST00000559715 TRIM41Q8WV44 630 aa21.01■□□□□ 0.95
HERC1-204ENST00000559715 OSCARQ8IYS5 282 aa20.94■□□□□ 0.94
HERC1-204ENST00000559715 ZNF608Q9ULD9 1512 aaPredicted RBP20.9■□□□□ 0.94
HERC1-204ENST00000559715 TOPBP1Q92547 1522 aa20.88■□□□□ 0.93
HERC1-204ENST00000559715 IFT140Q96RY7 1462 aa20.85■□□□□ 0.93
HERC1-204ENST00000559715 DNMBPQ6XZF7 1577 aa20.77■□□□□ 0.92
HERC1-204ENST00000559715 RIMBP3CA6NJZ7 1639 aa20.76■□□□□ 0.91
HERC1-204ENST00000559715 RIMBP3BA6NNM3 1639 aa20.76■□□□□ 0.91
HERC1-204ENST00000559715 TARBP1Q13395 1621 aaKnown RBP20.76■□□□□ 0.91
HERC1-204ENST00000559715 RIMBP3Q9UFD9 1639 aa20.76■□□□□ 0.91
HERC1-204ENST00000559715 ABCC8Q09428 1581 aa20.76■□□□□ 0.91
HERC1-204ENST00000559715 EIF4G3O43432 1585 aaKnown RBP20.75■□□□□ 0.91
HERC1-204ENST00000559715 AQRO60306 1485 aaKnown RBP eCLIP20.68■□□□□ 0.9
HERC1-204ENST00000559715 ARHGEF11O15085 1522 aa20.67■□□□□ 0.9
HERC1-204ENST00000559715 POLA1P09884 1462 aaPredicted RBP20.66■□□□□ 0.9
HERC1-204ENST00000559715 CHD1O14646 1710 aa20.64■□□□□ 0.9
HERC1-204ENST00000559715 RAD54L2Q9Y4B4 1467 aa20.59■□□□□ 0.89
HERC1-204ENST00000559715 SOGA1O94964 1423 aa20.53■□□□□ 0.88
HERC1-204ENST00000559715 TDRD9Q8NDG6 1382 aaKnown RBP20.51■□□□□ 0.87
HERC1-204ENST00000559715 CUX1P39880 1505 aa20.51■□□□□ 0.87
HERC1-204ENST00000559715 FGD5Q6ZNL6 1462 aa20.5■□□□□ 0.87
HERC1-204ENST00000559715 ARAP1Q96P48 1450 aa20.48■□□□□ 0.87
HERC1-204ENST00000559715 CYB5RLQ6IPT4 315 aa20.47■□□□□ 0.87
HERC1-204ENST00000559715 WDR97A6NE52 1622 aa20.45■□□□□ 0.86
HERC1-204ENST00000559715 SNAPC4Q5SXM2 1469 aa20.43■□□□□ 0.86
HERC1-204ENST00000559715 FBLN2P98095 1184 aa20.42■□□□□ 0.86
HERC1-204ENST00000559715 CLASP1Q7Z460 1538 aa20.42■□□□□ 0.86
HERC1-204ENST00000559715 MAGI1Q96QZ7 1491 aaPredicted RBP20.37■□□□□ 0.85
HERC1-204ENST00000559715 GRIN2BQ13224 1484 aa20.34■□□□□ 0.85
HERC1-204ENST00000559715 PBRM1Q86U86 1689 aa20.31■□□□□ 0.84
HERC1-204ENST00000559715 SYNJ2O15056 1496 aa20.3■□□□□ 0.84
HERC1-204ENST00000559715 SYNJ1O43426 1573 aa20.29■□□□□ 0.84
HERC1-204ENST00000559715 ABCA5Q8WWZ7 1642 aa20.28■□□□□ 0.84
HERC1-204ENST00000559715 CHMP7Q8WUX9 453 aaPredicted RBP20.28■□□□□ 0.84
HERC1-204ENST00000559715 ABCA10Q8WWZ4 1543 aa20.27■□□□□ 0.84
HERC1-204ENST00000559715 GAPVD1Q14C86 1478 aa20.27■□□□□ 0.84
HERC1-204ENST00000559715 TRHP20396 242 aaPredicted RBP20.18■□□□□ 0.82
HERC1-204ENST00000559715 SUPT5HO00267 1087 aaKnown RBP20.17■□□□□ 0.82
HERC1-204ENST00000559715 BIVM-ERCC5R4GMW8 1640 aa20.16■□□□□ 0.82
HERC1-204ENST00000559715 TOP2BQ02880 1626 aa20.13■□□□□ 0.81
HERC1-204ENST00000559715 ERCC6L2Q5T890 1561 aa20.12■□□□□ 0.81
HERC1-204ENST00000559715 GRIN2AQ12879 1464 aa20.11■□□□□ 0.81
HERC1-204ENST00000559715 WRNQ14191 1432 aaPredicted RBP eCLIP20.1■□□□□ 0.81
HERC1-204ENST00000559715 ADAMTS12P58397 1594 aa20.1■□□□□ 0.81
HERC1-204ENST00000559715 CEP170Q5SW79 1584 aa20.08■□□□□ 0.81
HERC1-204ENST00000559715 NUP160Q12769 1436 aa20.08■□□□□ 0.8
HERC1-204ENST00000559715 SHROOM2Q13796 1616 aa20.04■□□□□ 0.8
HERC1-204ENST00000559715 ERICH3Q5RHP9 1530 aa20■□□□□ 0.79
HERC1-204ENST00000559715 FHAD1B1AJZ9 1412 aa20■□□□□ 0.79
HERC1-204ENST00000559715 KIF13AQ9H1H9 1805 aa19.84■□□□□ 0.77
HERC1-204ENST00000559715 PRG4Q92954 1404 aaPredicted RBP19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms