RNA–Protein interactions for RNA: ENST00000559347.1

SPG11-216, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 716 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-216ENST00000559347 NISCHQ9Y2I1 1504 aa27.13■■□□□ 1.93
SPG11-216ENST00000559347 CCDC180Q9P1Z9 1646 aa24.33■■□□□ 1.49
SPG11-216ENST00000559347 ABCC9O60706 1549 aa23.79■■□□□ 1.4
SPG11-216ENST00000559347 RB1CC1Q8TDY2 1594 aa22.89■■□□□ 1.25
SPG11-216ENST00000559347 NACADO15069 1562 aa22.8■■□□□ 1.24
SPG11-216ENST00000559347 MYO15BQ96JP2 1530 aa22.63■■□□□ 1.21
SPG11-216ENST00000559347 ZCCHC6Q5VYS8 1495 aaKnown RBP22.61■■□□□ 1.21
SPG11-216ENST00000559347 DCAF8L2P0C7V8 631 aa22.51■■□□□ 1.19
SPG11-216ENST00000559347 UNC13AQ9UPW8 1703 aa22.51■■□□□ 1.19
SPG11-216ENST00000559347 DCAF1Q9Y4B6 1507 aa22.48■■□□□ 1.19
SPG11-216ENST00000559347 BICRAQ9NZM4 1560 aa22.23■■□□□ 1.15
SPG11-216ENST00000559347 AEBP2Q6ZN18 517 aaPredicted RBP22.17■■□□□ 1.14
SPG11-216ENST00000559347 SCRIBQ14160 1630 aa22.12■■□□□ 1.13
SPG11-216ENST00000559347 PABPN1Q86U42 306 aaKnown RBP eCLIP22.09■■□□□ 1.13
SPG11-216ENST00000559347 SHROOM4Q9ULL8 1493 aa21.98■■□□□ 1.11
SPG11-216ENST00000559347 DNAJC5BQ9UF47 199 aa21.88■■□□□ 1.09
SPG11-216ENST00000559347 EIF4G1Q04637 1599 aaKnown RBP21.64■■□□□ 1.05
SPG11-216ENST00000559347 CC2D2AQ9P2K1 1620 aa21.58■■□□□ 1.05
SPG11-216ENST00000559347 CECR2Q9BXF3 1484 aa21.39■■□□□ 1.02
SPG11-216ENST00000559347 CHIC1Q5VXU3 224 aa21.38■■□□□ 1.01
SPG11-216ENST00000559347 SMARCA4P51532 1647 aa21.15■□□□□ 0.98
SPG11-216ENST00000559347 BAZ1AQ9NRL2 1556 aaPredicted RBP21.06■□□□□ 0.96
SPG11-216ENST00000559347 SMARCA2P51531 1590 aa21■□□□□ 0.95
SPG11-216ENST00000559347 NCAPD3P42695 1498 aa20.99■□□□□ 0.95
SPG11-216ENST00000559347 ATAD2BQ9ULI0 1458 aa20.99■□□□□ 0.95
SPG11-216ENST00000559347 HMGXB3Q12766 1538 aa20.98■□□□□ 0.95
SPG11-216ENST00000559347 PEG3Q9GZU2 1588 aa20.95■□□□□ 0.94
SPG11-216ENST00000559347 MROH2BQ7Z745 1585 aa20.91■□□□□ 0.94
SPG11-216ENST00000559347 BAZ1BQ9UIG0 1483 aaKnown RBP20.83■□□□□ 0.93
SPG11-216ENST00000559347 WIZO95785 1651 aa20.73■□□□□ 0.91
SPG11-216ENST00000559347 NESP48681 1621 aa20.56■□□□□ 0.88
SPG11-216ENST00000559347 RSF1Q96T23 1441 aaPredicted RBP20.56■□□□□ 0.88
SPG11-216ENST00000559347 LAMC3Q9Y6N6 1575 aa20.55■□□□□ 0.88
SPG11-216ENST00000559347 ERCC6Q03468 1493 aa20.51■□□□□ 0.87
SPG11-216ENST00000559347 TOP2AP11388 1531 aaKnown RBP20.48■□□□□ 0.87
SPG11-216ENST00000559347 KIF21AQ7Z4S6 1674 aa20.44■□□□□ 0.86
SPG11-216ENST00000559347 THOC2Q8NI27 1593 aaKnown RBP20.41■□□□□ 0.86
SPG11-216ENST00000559347 CUX2O14529 1486 aa20.4■□□□□ 0.86
SPG11-216ENST00000559347 CADPSQ9ULU8 1353 aa20.34■□□□□ 0.85
SPG11-216ENST00000559347 PDS5BQ9NTI5 1447 aa20.3■□□□□ 0.84
SPG11-216ENST00000559347 PRDM2Q13029 1718 aa20.27■□□□□ 0.84
SPG11-216ENST00000559347 CFTRP13569 1480 aa20.24■□□□□ 0.83
SPG11-216ENST00000559347 CCDC88BA6NC98 1476 aa20.17■□□□□ 0.82
SPG11-216ENST00000559347 MRC2Q9UBG0 1479 aa20.17■□□□□ 0.82
SPG11-216ENST00000559347 CEP164Q9UPV0 1460 aa20.17■□□□□ 0.82
SPG11-216ENST00000559347 WDR62O43379 1518 aa20.16■□□□□ 0.82
SPG11-216ENST00000559347 FANCD2Q9BXW9 1451 aa20.15■□□□□ 0.82
SPG11-216ENST00000559347 URB2Q14146 1524 aaKnown RBP19.99■□□□□ 0.79
SPG11-216ENST00000559347 DNMBPQ6XZF7 1577 aa19.84■□□□□ 0.77
SPG11-216ENST00000559347 TOPBP1Q92547 1522 aa19.83■□□□□ 0.77
SPG11-216ENST00000559347 DNAJC5Q9H3Z4 198 aa19.81■□□□□ 0.76
SPG11-216ENST00000559347 SUPT5HO00267 1087 aaKnown RBP19.79■□□□□ 0.76
SPG11-216ENST00000559347 ABCC8Q09428 1581 aa19.78■□□□□ 0.76
SPG11-216ENST00000559347 IFT140Q96RY7 1462 aa19.73■□□□□ 0.75
SPG11-216ENST00000559347 TARBP1Q13395 1621 aaKnown RBP19.69■□□□□ 0.74
SPG11-216ENST00000559347 EIF4G3O43432 1585 aaKnown RBP19.67■□□□□ 0.74
SPG11-216ENST00000559347 POLA1P09884 1462 aaPredicted RBP19.66■□□□□ 0.74
SPG11-216ENST00000559347 ZNF608Q9ULD9 1512 aaPredicted RBP19.66■□□□□ 0.74
SPG11-216ENST00000559347 CUX1P39880 1505 aa19.64■□□□□ 0.73
SPG11-216ENST00000559347 FGD5Q6ZNL6 1462 aa19.59■□□□□ 0.73
SPG11-216ENST00000559347 WDR97A6NE52 1622 aa19.58■□□□□ 0.72
SPG11-216ENST00000559347 RAD54L2Q9Y4B4 1467 aa19.54■□□□□ 0.72
SPG11-216ENST00000559347 BIVM-ERCC5R4GMW8 1640 aa19.51■□□□□ 0.71
SPG11-216ENST00000559347 SOGA1O94964 1423 aa19.49■□□□□ 0.71
SPG11-216ENST00000559347 CHD1O14646 1710 aa19.48■□□□□ 0.71
SPG11-216ENST00000559347 AQRO60306 1485 aaKnown RBP eCLIP19.48■□□□□ 0.711e-7■■■□□ 18.8
SPG11-216ENST00000559347 TOP2BQ02880 1626 aa19.47■□□□□ 0.71
SPG11-216ENST00000559347 SYNJ1O43426 1573 aa19.45■□□□□ 0.7
SPG11-216ENST00000559347 PBRM1Q86U86 1689 aa19.44■□□□□ 0.7
SPG11-216ENST00000559347 ABCA5Q8WWZ7 1642 aa19.41■□□□□ 0.7
SPG11-216ENST00000559347 WRNQ14191 1432 aaPredicted RBP eCLIP19.4■□□□□ 0.7
SPG11-216ENST00000559347 TDRD9Q8NDG6 1382 aaKnown RBP19.39■□□□□ 0.69
SPG11-216ENST00000559347 ABCA10Q8WWZ4 1543 aa19.39■□□□□ 0.69
SPG11-216ENST00000559347 OSCARQ8IYS5 282 aa19.36■□□□□ 0.69
SPG11-216ENST00000559347 SNAPC4Q5SXM2 1469 aa19.35■□□□□ 0.69
SPG11-216ENST00000559347 GRIN2BQ13224 1484 aa19.33■□□□□ 0.68
SPG11-216ENST00000559347 MAGI1Q96QZ7 1491 aaPredicted RBP19.33■□□□□ 0.68
SPG11-216ENST00000559347 GAPVD1Q14C86 1478 aa19.31■□□□□ 0.68
SPG11-216ENST00000559347 RIMBP3CA6NJZ7 1639 aa19.28■□□□□ 0.68
SPG11-216ENST00000559347 RIMBP3BA6NNM3 1639 aa19.28■□□□□ 0.68
SPG11-216ENST00000559347 RIMBP3Q9UFD9 1639 aa19.28■□□□□ 0.68
SPG11-216ENST00000559347 SYNJ2O15056 1496 aa19.24■□□□□ 0.67
SPG11-216ENST00000559347 ADAMTS12P58397 1594 aa19.23■□□□□ 0.67
SPG11-216ENST00000559347 ARHGEF11O15085 1522 aa19.22■□□□□ 0.67
SPG11-216ENST00000559347 CLASP1Q7Z460 1538 aa19.22■□□□□ 0.67
SPG11-216ENST00000559347 FBLN2P98095 1184 aa19.18■□□□□ 0.66
SPG11-216ENST00000559347 ERICH3Q5RHP9 1530 aa19.17■□□□□ 0.66
SPG11-216ENST00000559347 GRIN2AQ12879 1464 aa19.11■□□□□ 0.65
SPG11-216ENST00000559347 CHMP7Q8WUX9 453 aaPredicted RBP19.11■□□□□ 0.65
SPG11-216ENST00000559347 TRIM41Q8WV44 630 aa19.08■□□□□ 0.64
SPG11-216ENST00000559347 CEP170Q5SW79 1584 aa19.07■□□□□ 0.64
SPG11-216ENST00000559347 FHAD1B1AJZ9 1412 aa19.07■□□□□ 0.64
SPG11-216ENST00000559347 ARAP1Q96P48 1450 aa19.05■□□□□ 0.64
SPG11-216ENST00000559347 CUL7Q14999 1698 aa19.03■□□□□ 0.64
SPG11-216ENST00000559347 NUP160Q12769 1436 aa19.02■□□□□ 0.64
SPG11-216ENST00000559347 SHROOM2Q13796 1616 aa19■□□□□ 0.63
SPG11-216ENST00000559347 KIF27Q86VH2 1401 aa18.98■□□□□ 0.63
SPG11-216ENST00000559347 RUSC2Q8N2Y8 1516 aa18.96■□□□□ 0.63
SPG11-216ENST00000559347 ERCC6L2Q5T890 1561 aa18.91■□□□□ 0.62
SPG11-216ENST00000559347 IGF1RP08069 1367 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 142.9 ms