RNA–Protein interactions for RNA: ENST00000558700.5

TRAF3-205, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-205ENST00000558700 NISCHQ9Y2I1 1504 aa20.11■□□□□ 0.81
TRAF3-205ENST00000558700 CHIC1Q5VXU3 224 aa19.67■□□□□ 0.74
TRAF3-205ENST00000558700 AEBP2Q6ZN18 517 aaPredicted RBP19.29■□□□□ 0.68
TRAF3-205ENST00000558700 CCDC180Q9P1Z9 1646 aa18.12■□□□□ 0.49
TRAF3-205ENST00000558700 ABCC9O60706 1549 aa17.87■□□□□ 0.45
TRAF3-205ENST00000558700 PHF23Q9BUL5 403 aaPredicted RBP17.29■□□□□ 0.36
TRAF3-205ENST00000558700 RB1CC1Q8TDY2 1594 aa17.15■□□□□ 0.34
TRAF3-205ENST00000558700 NACADO15069 1562 aa17.04■□□□□ 0.32
TRAF3-205ENST00000558700 MYO15BQ96JP2 1530 aa16.86■□□□□ 0.29
TRAF3-205ENST00000558700 DCAF8L2P0C7V8 631 aa16.78■□□□□ 0.28
TRAF3-205ENST00000558700 UNC13AQ9UPW8 1703 aa16.77■□□□□ 0.28
TRAF3-205ENST00000558700 ZCCHC6Q5VYS8 1495 aaKnown RBP16.73■□□□□ 0.27
TRAF3-205ENST00000558700 DCAF1Q9Y4B6 1507 aa16.66■□□□□ 0.26
TRAF3-205ENST00000558700 BICRAQ9NZM4 1560 aa16.59■□□□□ 0.25
TRAF3-205ENST00000558700 PABPN1Q86U42 306 aaKnown RBP eCLIP16.56■□□□□ 0.24
TRAF3-205ENST00000558700 DNAJC5BQ9UF47 199 aa16.52■□□□□ 0.24
TRAF3-205ENST00000558700 SHROOM4Q9ULL8 1493 aa16.49■□□□□ 0.23
TRAF3-205ENST00000558700 SCRIBQ14160 1630 aa16.45■□□□□ 0.22
TRAF3-205ENST00000558700 SENP3Q9H4L4 574 aaPredicted RBP16.4■□□□□ 0.22
TRAF3-205ENST00000558700 PLPPR3Q6T4P5 718 aa16.37■□□□□ 0.21
TRAF3-205ENST00000558700 CC2D2AQ9P2K1 1620 aa16.19■□□□□ 0.18
TRAF3-205ENST00000558700 EIF4G1Q04637 1599 aaKnown RBP16.19■□□□□ 0.18
TRAF3-205ENST00000558700 CECR2Q9BXF3 1484 aa16.1■□□□□ 0.17
TRAF3-205ENST00000558700 SMARCA4P51532 1647 aa15.72■□□□□ 0.11
TRAF3-205ENST00000558700 SMARCA2P51531 1590 aa15.67■□□□□ 0.1
TRAF3-205ENST00000558700 NCAPD3P42695 1498 aa15.66■□□□□ 0.1
TRAF3-205ENST00000558700 HMGXB3Q12766 1538 aa15.65■□□□□ 0.1
TRAF3-205ENST00000558700 BAZ1AQ9NRL2 1556 aaPredicted RBP15.65■□□□□ 0.1
TRAF3-205ENST00000558700 ATAD2BQ9ULI0 1458 aa15.64■□□□□ 0.09
TRAF3-205ENST00000558700 PEG3Q9GZU2 1588 aa15.56■□□□□ 0.08
TRAF3-205ENST00000558700 BAZ1BQ9UIG0 1483 aaKnown RBP15.53■□□□□ 0.08
TRAF3-205ENST00000558700 MROH2BQ7Z745 1585 aa15.48■□□□□ 0.07
TRAF3-205ENST00000558700 ERCC6Q03468 1493 aa15.47■□□□□ 0.07
TRAF3-205ENST00000558700 CUX2O14529 1486 aa15.43■□□□□ 0.06
TRAF3-205ENST00000558700 LAMC3Q9Y6N6 1575 aa15.37■□□□□ 0.05
TRAF3-205ENST00000558700 NESP48681 1621 aa15.37■□□□□ 0.05
TRAF3-205ENST00000558700 WIZO95785 1651 aa15.32■□□□□ 0.04
TRAF3-205ENST00000558700 THOC2Q8NI27 1593 aaKnown RBP15.29■□□□□ 0.04
TRAF3-205ENST00000558700 KIF21AQ7Z4S6 1674 aa15.27■□□□□ 0.03
TRAF3-205ENST00000558700 PDS5BQ9NTI5 1447 aa15.22■□□□□ 0.03
TRAF3-205ENST00000558700 ADRA2BP18089 450 aa15.18■□□□□ 0.02
TRAF3-205ENST00000558700 CADPSQ9ULU8 1353 aa15.18■□□□□ 0.02
TRAF3-205ENST00000558700 RSF1Q96T23 1441 aaPredicted RBP15.17■□□□□ 0.02
TRAF3-205ENST00000558700 TOP2AP11388 1531 aaKnown RBP15.17■□□□□ 0.02
TRAF3-205ENST00000558700 DNAJC5Q9H3Z4 198 aa15.15■□□□□ 0.02
TRAF3-205ENST00000558700 MRC2Q9UBG0 1479 aa15.12■□□□□ 0.01
TRAF3-205ENST00000558700 WDR62O43379 1518 aa15.1■□□□□ 0.01
TRAF3-205ENST00000558700 CEP164Q9UPV0 1460 aa15.08■□□□□ 0.01
TRAF3-205ENST00000558700 CFTRP13569 1480 aa15.06■□□□□ 0
TRAF3-205ENST00000558700 PRDM2Q13029 1718 aa15.06■□□□□ 0
TRAF3-205ENST00000558700 FANCD2Q9BXW9 1451 aa15.05■□□□□ -0
TRAF3-205ENST00000558700 FOXD1Q16676 465 aa15.04■□□□□ -0
TRAF3-205ENST00000558700 PPP6R1Q9UPN7 881 aa15.01□□□□□ -0.01
TRAF3-205ENST00000558700 KCNA4P22459 653 aa14.96□□□□□ -0.01
TRAF3-205ENST00000558700 CCDC88BA6NC98 1476 aa14.91□□□□□ -0.02
TRAF3-205ENST00000558700 URB2Q14146 1524 aaKnown RBP14.91□□□□□ -0.02
TRAF3-205ENST00000558700 EHMT2Q96KQ7 1210 aa14.9□□□□□ -0.02
TRAF3-205ENST00000558700 DNMBPQ6XZF7 1577 aa14.78□□□□□ -0.04
TRAF3-205ENST00000558700 TOPBP1Q92547 1522 aa14.78□□□□□ -0.04
TRAF3-205ENST00000558700 ABCC8Q09428 1581 aa14.77□□□□□ -0.04
TRAF3-205ENST00000558700 IFT140Q96RY7 1462 aa14.77□□□□□ -0.04
TRAF3-205ENST00000558700 EIF4G3O43432 1585 aaKnown RBP14.7□□□□□ -0.06
TRAF3-205ENST00000558700 ZNF608Q9ULD9 1512 aaPredicted RBP14.68□□□□□ -0.06
TRAF3-205ENST00000558700 TARBP1Q13395 1621 aaKnown RBP14.66□□□□□ -0.06
TRAF3-205ENST00000558700 POLA1P09884 1462 aaPredicted RBP14.63□□□□□ -0.07
TRAF3-205ENST00000558700 OSCARQ8IYS5 282 aa14.62□□□□□ -0.07
TRAF3-205ENST00000558700 WDR97A6NE52 1622 aa14.59□□□□□ -0.07
TRAF3-205ENST00000558700 CHD1O14646 1710 aa14.58□□□□□ -0.08
TRAF3-205ENST00000558700 FGD5Q6ZNL6 1462 aa14.56□□□□□ -0.08
TRAF3-205ENST00000558700 CUX1P39880 1505 aa14.56□□□□□ -0.08
TRAF3-205ENST00000558700 RIMBP3CA6NJZ7 1639 aa14.53□□□□□ -0.08
TRAF3-205ENST00000558700 RIMBP3BA6NNM3 1639 aa14.53□□□□□ -0.08
TRAF3-205ENST00000558700 RIMBP3Q9UFD9 1639 aa14.53□□□□□ -0.08
TRAF3-205ENST00000558700 AQRO60306 1485 aaKnown RBP eCLIP14.53□□□□□ -0.084e-6■■■■■ 31
TRAF3-205ENST00000558700 TRIM41Q8WV44 630 aa14.53□□□□□ -0.08
TRAF3-205ENST00000558700 RAD54L2Q9Y4B4 1467 aa14.52□□□□□ -0.08
TRAF3-205ENST00000558700 SOGA1O94964 1423 aa14.51□□□□□ -0.09
TRAF3-205ENST00000558700 SUPT5HO00267 1087 aaKnown RBP14.5□□□□□ -0.09
TRAF3-205ENST00000558700 PPP4R3CPQ6ZMV5 832 aa14.49□□□□□ -0.09
TRAF3-205ENST00000558700 ARHGEF11O15085 1522 aa14.48□□□□□ -0.09
TRAF3-205ENST00000558700 PBRM1Q86U86 1689 aa14.46□□□□□ -0.09
TRAF3-205ENST00000558700 SNAPC4Q5SXM2 1469 aa14.46□□□□□ -0.09
TRAF3-205ENST00000558700 SLC4A1APQ9BWU0 796 aaKnown RBP14.46□□□□□ -0.09
TRAF3-205ENST00000558700 MAGI1Q96QZ7 1491 aaPredicted RBP14.45□□□□□ -0.1
TRAF3-205ENST00000558700 TDRD9Q8NDG6 1382 aaKnown RBP14.45□□□□□ -0.1
TRAF3-205ENST00000558700 PIAS4Q8N2W9 510 aaPredicted RBP14.44□□□□□ -0.1
TRAF3-205ENST00000558700 GRIN2BQ13224 1484 aa14.44□□□□□ -0.1
TRAF3-205ENST00000558700 NCBP3Q53F19 620 aaKnown RBP14.43□□□□□ -0.1
TRAF3-205ENST00000558700 ABCA5Q8WWZ7 1642 aa14.42□□□□□ -0.1
TRAF3-205ENST00000558700 BIVM-ERCC5R4GMW8 1640 aa14.42□□□□□ -0.1
TRAF3-205ENST00000558700 ABCA10Q8WWZ4 1543 aa14.41□□□□□ -0.1
TRAF3-205ENST00000558700 SYNJ1O43426 1573 aa14.41□□□□□ -0.1
TRAF3-205ENST00000558700 FBLN2P98095 1184 aa14.39□□□□□ -0.11
TRAF3-205ENST00000558700 TOP2BQ02880 1626 aa14.39□□□□□ -0.11
TRAF3-205ENST00000558700 SYNJ2O15056 1496 aa14.38□□□□□ -0.11
TRAF3-205ENST00000558700 GAPVD1Q14C86 1478 aa14.38□□□□□ -0.11
TRAF3-205ENST00000558700 CLASP1Q7Z460 1538 aa14.38□□□□□ -0.11
TRAF3-205ENST00000558700 WRNQ14191 1432 aaPredicted RBP eCLIP14.35□□□□□ -0.11
TRAF3-205ENST00000558700 ARAP1Q96P48 1450 aa14.33□□□□□ -0.12
TRAF3-205ENST00000558700 CHMP7Q8WUX9 453 aaPredicted RBP14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms