RNA–Protein interactions for RNA: ENST00000558500.5

LRRC28-207, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-207ENST00000558500 NISCHQ9Y2I1 1504 aa17.4■□□□□ 0.38
LRRC28-207ENST00000558500 AEBP2Q6ZN18 517 aaPredicted RBP17.21■□□□□ 0.35
LRRC28-207ENST00000558500 CHIC1Q5VXU3 224 aa16.72■□□□□ 0.27
LRRC28-207ENST00000558500 ABCC9O60706 1549 aa16.13■□□□□ 0.17
LRRC28-207ENST00000558500 CCDC180Q9P1Z9 1646 aa15.69■□□□□ 0.1
LRRC28-207ENST00000558500 DNAJC5BQ9UF47 199 aa15.5■□□□□ 0.07
LRRC28-207ENST00000558500 RB1CC1Q8TDY2 1594 aa15.16■□□□□ 0.02
LRRC28-207ENST00000558500 PABPN1Q86U42 306 aaKnown RBP eCLIP14.99□□□□□ -0.01
LRRC28-207ENST00000558500 NACADO15069 1562 aa14.98□□□□□ -0.01
LRRC28-207ENST00000558500 DCAF8L2P0C7V8 631 aa14.87□□□□□ -0.03
LRRC28-207ENST00000558500 BICRAQ9NZM4 1560 aa14.73□□□□□ -0.05
LRRC28-207ENST00000558500 UNC13AQ9UPW8 1703 aa14.69□□□□□ -0.06
LRRC28-207ENST00000558500 MYO15BQ96JP2 1530 aa14.68□□□□□ -0.06
LRRC28-207ENST00000558500 SENP3Q9H4L4 574 aaPredicted RBP14.68□□□□□ -0.06
LRRC28-207ENST00000558500 PHF23Q9BUL5 403 aaPredicted RBP14.65□□□□□ -0.06
LRRC28-207ENST00000558500 CECR2Q9BXF3 1484 aa14.58□□□□□ -0.08
LRRC28-207ENST00000558500 SHROOM4Q9ULL8 1493 aa14.53□□□□□ -0.08
LRRC28-207ENST00000558500 CC2D2AQ9P2K1 1620 aa14.51□□□□□ -0.09
LRRC28-207ENST00000558500 DNAJC5Q9H3Z4 198 aa14.5□□□□□ -0.09
LRRC28-207ENST00000558500 EIF4G1Q04637 1599 aaKnown RBP14.41□□□□□ -0.1
LRRC28-207ENST00000558500 DCAF1Q9Y4B6 1507 aa14.36□□□□□ -0.11
LRRC28-207ENST00000558500 ZCCHC6Q5VYS8 1495 aaKnown RBP14.34□□□□□ -0.11
LRRC28-207ENST00000558500 SCRIBQ14160 1630 aa14.3□□□□□ -0.12
LRRC28-207ENST00000558500 CUX2O14529 1486 aa14.06□□□□□ -0.16
LRRC28-207ENST00000558500 ERCC6Q03468 1493 aa13.95□□□□□ -0.18
LRRC28-207ENST00000558500 NCAPD3P42695 1498 aa13.88□□□□□ -0.19
LRRC28-207ENST00000558500 ATAD2BQ9ULI0 1458 aa13.77□□□□□ -0.21
LRRC28-207ENST00000558500 NESP48681 1621 aa13.75□□□□□ -0.21
LRRC28-207ENST00000558500 HMGXB3Q12766 1538 aa13.7□□□□□ -0.22
LRRC28-207ENST00000558500 TRIM41Q8WV44 630 aa13.69□□□□□ -0.22
LRRC28-207ENST00000558500 SMARCA2P51531 1590 aa13.68□□□□□ -0.22
LRRC28-207ENST00000558500 THOC2Q8NI27 1593 aaKnown RBP13.64□□□□□ -0.23
LRRC28-207ENST00000558500 SMARCA4P51532 1647 aa13.61□□□□□ -0.23
LRRC28-207ENST00000558500 BAZ1BQ9UIG0 1483 aaKnown RBP13.61□□□□□ -0.23
LRRC28-207ENST00000558500 FOXD1Q16676 465 aa13.59□□□□□ -0.23
LRRC28-207ENST00000558500 LAMC3Q9Y6N6 1575 aa13.57□□□□□ -0.24
LRRC28-207ENST00000558500 PDS5BQ9NTI5 1447 aa13.55□□□□□ -0.24
LRRC28-207ENST00000558500 PLPPR3Q6T4P5 718 aa13.54□□□□□ -0.24
LRRC28-207ENST00000558500 BAZ1AQ9NRL2 1556 aaPredicted RBP13.52□□□□□ -0.25
LRRC28-207ENST00000558500 PEG3Q9GZU2 1588 aa13.5□□□□□ -0.25
LRRC28-207ENST00000558500 KIF21AQ7Z4S6 1674 aa13.47□□□□□ -0.25
LRRC28-207ENST00000558500 CADPSQ9ULU8 1353 aa13.45□□□□□ -0.26
LRRC28-207ENST00000558500 MRC2Q9UBG0 1479 aa13.44□□□□□ -0.26
LRRC28-207ENST00000558500 WDR62O43379 1518 aa13.4□□□□□ -0.26
LRRC28-207ENST00000558500 MROH2BQ7Z745 1585 aa13.4□□□□□ -0.26
LRRC28-207ENST00000558500 OSCARQ8IYS5 282 aa13.38□□□□□ -0.27
LRRC28-207ENST00000558500 CEP164Q9UPV0 1460 aa13.3□□□□□ -0.28
LRRC28-207ENST00000558500 FANCD2Q9BXW9 1451 aa13.27□□□□□ -0.29
LRRC28-207ENST00000558500 CFTRP13569 1480 aa13.2□□□□□ -0.3
LRRC28-207ENST00000558500 URB2Q14146 1524 aaKnown RBP13.18□□□□□ -0.3
LRRC28-207ENST00000558500 WIZO95785 1651 aa13.17□□□□□ -0.3
LRRC28-207ENST00000558500 RIMBP3CA6NJZ7 1639 aa13.17□□□□□ -0.3
LRRC28-207ENST00000558500 RIMBP3BA6NNM3 1639 aa13.17□□□□□ -0.3
LRRC28-207ENST00000558500 RIMBP3Q9UFD9 1639 aa13.17□□□□□ -0.3
LRRC28-207ENST00000558500 ARHGEF11O15085 1522 aa13.13□□□□□ -0.31
LRRC28-207ENST00000558500 CYB5RLQ6IPT4 315 aa13.08□□□□□ -0.32
LRRC28-207ENST00000558500 ZNF608Q9ULD9 1512 aaPredicted RBP13.08□□□□□ -0.32
LRRC28-207ENST00000558500 IFT140Q96RY7 1462 aa13.07□□□□□ -0.32
LRRC28-207ENST00000558500 TRHP20396 242 aaPredicted RBP13.05□□□□□ -0.32
LRRC28-207ENST00000558500 RSF1Q96T23 1441 aaPredicted RBP13.02□□□□□ -0.33
LRRC28-207ENST00000558500 TOP2AP11388 1531 aaKnown RBP13.02□□□□□ -0.33
LRRC28-207ENST00000558500 ARAP1Q96P48 1450 aa12.98□□□□□ -0.33
LRRC28-207ENST00000558500 PPP6R1Q9UPN7 881 aa12.96□□□□□ -0.33
LRRC28-207ENST00000558500 TOPBP1Q92547 1522 aa12.96□□□□□ -0.33
LRRC28-207ENST00000558500 ADRA2BP18089 450 aa12.95□□□□□ -0.34
LRRC28-207ENST00000558500 EIF4G3O43432 1585 aaKnown RBP12.94□□□□□ -0.34
LRRC28-207ENST00000558500 AQRO60306 1485 aaKnown RBP eCLIP12.92□□□□□ -0.34
LRRC28-207ENST00000558500 FBLN2P98095 1184 aa12.92□□□□□ -0.34
LRRC28-207ENST00000558500 ABCC8Q09428 1581 aa12.91□□□□□ -0.34
LRRC28-207ENST00000558500 CCDC88BA6NC98 1476 aa12.9□□□□□ -0.34
LRRC28-207ENST00000558500 DNMBPQ6XZF7 1577 aa12.86□□□□□ -0.35
LRRC28-207ENST00000558500 PRDM2Q13029 1718 aa12.86□□□□□ -0.35
LRRC28-207ENST00000558500 CHD1O14646 1710 aa12.85□□□□□ -0.35
LRRC28-207ENST00000558500 TARBP1Q13395 1621 aaKnown RBP12.85□□□□□ -0.35
LRRC28-207ENST00000558500 PIAS4Q8N2W9 510 aaPredicted RBP12.82□□□□□ -0.36
LRRC28-207ENST00000558500 POLA1P09884 1462 aaPredicted RBP12.82□□□□□ -0.36
LRRC28-207ENST00000558500 TDRD9Q8NDG6 1382 aaKnown RBP12.81□□□□□ -0.36
LRRC28-207ENST00000558500 RAD54L2Q9Y4B4 1467 aa12.78□□□□□ -0.36
LRRC28-207ENST00000558500 CLASP1Q7Z460 1538 aa12.78□□□□□ -0.36
LRRC28-207ENST00000558500 CHMP7Q8WUX9 453 aaPredicted RBP12.77□□□□□ -0.37
LRRC28-207ENST00000558500 SOGA1O94964 1423 aa12.77□□□□□ -0.37
LRRC28-207ENST00000558500 SNAPC4Q5SXM2 1469 aa12.76□□□□□ -0.37
LRRC28-207ENST00000558500 SYNJ1O43426 1573 aa12.73□□□□□ -0.37
LRRC28-207ENST00000558500 MAGI1Q96QZ7 1491 aaPredicted RBP12.72□□□□□ -0.37
LRRC28-207ENST00000558500 GAPVD1Q14C86 1478 aa12.71□□□□□ -0.38
LRRC28-207ENST00000558500 WDR97A6NE52 1622 aa12.7□□□□□ -0.38
LRRC28-207ENST00000558500 SYNJ2O15056 1496 aa12.69□□□□□ -0.38
LRRC28-207ENST00000558500 GRIN2BQ13224 1484 aa12.69□□□□□ -0.38
LRRC28-207ENST00000558500 FGD5Q6ZNL6 1462 aa12.68□□□□□ -0.38
LRRC28-207ENST00000558500 MSH5O43196 834 aa12.64□□□□□ -0.39
LRRC28-207ENST00000558500 CUX1P39880 1505 aa12.6□□□□□ -0.39
LRRC28-207ENST00000558500 ERCC6L2Q5T890 1561 aa12.56□□□□□ -0.4
LRRC28-207ENST00000558500 GRIN2AQ12879 1464 aa12.53□□□□□ -0.4
LRRC28-207ENST00000558500 ABCA10Q8WWZ4 1543 aa12.52□□□□□ -0.41
LRRC28-207ENST00000558500 NUP160Q12769 1436 aa12.51□□□□□ -0.41
LRRC28-207ENST00000558500 CEP170Q5SW79 1584 aa12.51□□□□□ -0.41
LRRC28-207ENST00000558500 PBRM1Q86U86 1689 aa12.51□□□□□ -0.41
LRRC28-207ENST00000558500 ABCA5Q8WWZ7 1642 aa12.49□□□□□ -0.41
LRRC28-207ENST00000558500 FAM69CQ0P6D2 419 aa12.44□□□□□ -0.42
LRRC28-207ENST00000558500 SHROOM2Q13796 1616 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms