RNA–Protein interactions for RNA: ENST00000558400.1

TPM1-213, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-213ENST00000558400 NISCHQ9Y2I1 1504 aa20.42■□□□□ 0.86
TPM1-213ENST00000558400 AEBP2Q6ZN18 517 aaPredicted RBP19.14■□□□□ 0.65
TPM1-213ENST00000558400 ABCC9O60706 1549 aa18.32■□□□□ 0.52
TPM1-213ENST00000558400 CHIC1Q5VXU3 224 aa18.1■□□□□ 0.49
TPM1-213ENST00000558400 CCDC180Q9P1Z9 1646 aa18.09■□□□□ 0.49
TPM1-213ENST00000558400 DNAJC5BQ9UF47 199 aa17.64■□□□□ 0.41
TPM1-213ENST00000558400 RB1CC1Q8TDY2 1594 aa17.25■□□□□ 0.35
TPM1-213ENST00000558400 DCAF8L2P0C7V8 631 aa17.22■□□□□ 0.35
TPM1-213ENST00000558400 NACADO15069 1562 aa17.11■□□□□ 0.33
TPM1-213ENST00000558400 MYO15BQ96JP2 1530 aa17.02■□□□□ 0.32
TPM1-213ENST00000558400 UNC13AQ9UPW8 1703 aa16.97■□□□□ 0.31
TPM1-213ENST00000558400 ZCCHC6Q5VYS8 1495 aaKnown RBP16.96■□□□□ 0.31
TPM1-213ENST00000558400 DCAF1Q9Y4B6 1507 aa16.91■□□□□ 0.3
TPM1-213ENST00000558400 PABPN1Q86U42 306 aaKnown RBP eCLIP16.87■□□□□ 0.29
TPM1-213ENST00000558400 BICRAQ9NZM4 1560 aa16.77■□□□□ 0.28
TPM1-213ENST00000558400 DNAJC5Q9H3Z4 198 aa16.66■□□□□ 0.26
TPM1-213ENST00000558400 CC2D2AQ9P2K1 1620 aa16.59■□□□□ 0.25
TPM1-213ENST00000558400 CECR2Q9BXF3 1484 aa16.58■□□□□ 0.24
TPM1-213ENST00000558400 SHROOM4Q9ULL8 1493 aa16.52■□□□□ 0.23
TPM1-213ENST00000558400 SCRIBQ14160 1630 aa16.48■□□□□ 0.23
TPM1-213ENST00000558400 EIF4G1Q04637 1599 aaKnown RBP16.4■□□□□ 0.22
TPM1-213ENST00000558400 SENP3Q9H4L4 574 aaPredicted RBP16.16■□□□□ 0.18
TPM1-213ENST00000558400 CUX2O14529 1486 aa16.1■□□□□ 0.17
TPM1-213ENST00000558400 PHF23Q9BUL5 403 aaPredicted RBP16.03■□□□□ 0.16
TPM1-213ENST00000558400 ERCC6Q03468 1493 aa15.87■□□□□ 0.13
TPM1-213ENST00000558400 NCAPD3P42695 1498 aa15.84■□□□□ 0.13
TPM1-213ENST00000558400 BAZ1AQ9NRL2 1556 aaPredicted RBP15.83■□□□□ 0.12
TPM1-213ENST00000558400 ATAD2BQ9ULI0 1458 aa15.79■□□□□ 0.12
TPM1-213ENST00000558400 SMARCA4P51532 1647 aa15.79■□□□□ 0.12
TPM1-213ENST00000558400 SMARCA2P51531 1590 aa15.77■□□□□ 0.11
TPM1-213ENST00000558400 MROH2BQ7Z745 1585 aa15.7■□□□□ 0.1
TPM1-213ENST00000558400 PEG3Q9GZU2 1588 aa15.67■□□□□ 0.1
TPM1-213ENST00000558400 HMGXB3Q12766 1538 aa15.67■□□□□ 0.1
TPM1-213ENST00000558400 BAZ1BQ9UIG0 1483 aaKnown RBP15.65■□□□□ 0.1
TPM1-213ENST00000558400 TRIM41Q8WV44 630 aa15.65■□□□□ 0.1
TPM1-213ENST00000558400 THOC2Q8NI27 1593 aaKnown RBP15.65■□□□□ 0.1
TPM1-213ENST00000558400 NESP48681 1621 aa15.57■□□□□ 0.08
TPM1-213ENST00000558400 RSF1Q96T23 1441 aaPredicted RBP15.57■□□□□ 0.08
TPM1-213ENST00000558400 WIZO95785 1651 aa15.48■□□□□ 0.07
TPM1-213ENST00000558400 KIF21AQ7Z4S6 1674 aa15.47■□□□□ 0.07
TPM1-213ENST00000558400 LAMC3Q9Y6N6 1575 aa15.44■□□□□ 0.06
TPM1-213ENST00000558400 CADPSQ9ULU8 1353 aa15.39■□□□□ 0.05
TPM1-213ENST00000558400 TOP2AP11388 1531 aaKnown RBP15.36■□□□□ 0.05
TPM1-213ENST00000558400 PDS5BQ9NTI5 1447 aa15.34■□□□□ 0.05
TPM1-213ENST00000558400 WDR62O43379 1518 aa15.26■□□□□ 0.03
TPM1-213ENST00000558400 CFTRP13569 1480 aa15.25■□□□□ 0.03
TPM1-213ENST00000558400 MRC2Q9UBG0 1479 aa15.23■□□□□ 0.03
TPM1-213ENST00000558400 CCDC88BA6NC98 1476 aa15.22■□□□□ 0.03
TPM1-213ENST00000558400 SUPT5HO00267 1087 aaKnown RBP15.2■□□□□ 0.02
TPM1-213ENST00000558400 FOXD1Q16676 465 aa15.17■□□□□ 0.02
TPM1-213ENST00000558400 RIMBP3CA6NJZ7 1639 aa15.16■□□□□ 0.02
TPM1-213ENST00000558400 RIMBP3BA6NNM3 1639 aa15.16■□□□□ 0.02
TPM1-213ENST00000558400 RIMBP3Q9UFD9 1639 aa15.16■□□□□ 0.02
TPM1-213ENST00000558400 FANCD2Q9BXW9 1451 aa15.14■□□□□ 0.01
TPM1-213ENST00000558400 OSCARQ8IYS5 282 aa15.13■□□□□ 0.01
TPM1-213ENST00000558400 CEP164Q9UPV0 1460 aa15.13■□□□□ 0.01
TPM1-213ENST00000558400 ARHGEF11O15085 1522 aa15.01□□□□□ -0.01
TPM1-213ENST00000558400 ABCC8Q09428 1581 aa14.98□□□□□ -0.01
TPM1-213ENST00000558400 URB2Q14146 1524 aaKnown RBP14.96□□□□□ -0.02
TPM1-213ENST00000558400 PRDM2Q13029 1718 aa14.95□□□□□ -0.02
TPM1-213ENST00000558400 TOPBP1Q92547 1522 aa14.87□□□□□ -0.03
TPM1-213ENST00000558400 IFT140Q96RY7 1462 aa14.84□□□□□ -0.03
TPM1-213ENST00000558400 DNMBPQ6XZF7 1577 aa14.84□□□□□ -0.03
TPM1-213ENST00000558400 TRHP20396 242 aaPredicted RBP14.83□□□□□ -0.04
TPM1-213ENST00000558400 ARAP1Q96P48 1450 aa14.81□□□□□ -0.04
TPM1-213ENST00000558400 CYB5RLQ6IPT4 315 aa14.8□□□□□ -0.04
TPM1-213ENST00000558400 CHD1O14646 1710 aa14.8□□□□□ -0.04
TPM1-213ENST00000558400 ZNF608Q9ULD9 1512 aaPredicted RBP14.78□□□□□ -0.04
TPM1-213ENST00000558400 SOGA1O94964 1423 aa14.76□□□□□ -0.05
TPM1-213ENST00000558400 EIF4G3O43432 1585 aaKnown RBP14.76□□□□□ -0.05
TPM1-213ENST00000558400 POLA1P09884 1462 aaPredicted RBP14.75□□□□□ -0.05
TPM1-213ENST00000558400 CUX1P39880 1505 aa14.72□□□□□ -0.05
TPM1-213ENST00000558400 FGD5Q6ZNL6 1462 aa14.7□□□□□ -0.06
TPM1-213ENST00000558400 WRNQ14191 1432 aaPredicted RBP eCLIP14.69□□□□□ -0.06
TPM1-213ENST00000558400 RAD54L2Q9Y4B4 1467 aa14.69□□□□□ -0.06
TPM1-213ENST00000558400 AQRO60306 1485 aaKnown RBP eCLIP14.68□□□□□ -0.06
TPM1-213ENST00000558400 TDRD9Q8NDG6 1382 aaKnown RBP14.67□□□□□ -0.06
TPM1-213ENST00000558400 TARBP1Q13395 1621 aaKnown RBP14.66□□□□□ -0.06
TPM1-213ENST00000558400 WDR97A6NE52 1622 aa14.61□□□□□ -0.07
TPM1-213ENST00000558400 FBLN2P98095 1184 aa14.59□□□□□ -0.07
TPM1-213ENST00000558400 TOP2BQ02880 1626 aa14.59□□□□□ -0.07
TPM1-213ENST00000558400 ABCA10Q8WWZ4 1543 aa14.58□□□□□ -0.08
TPM1-213ENST00000558400 GRIN2BQ13224 1484 aa14.57□□□□□ -0.08
TPM1-213ENST00000558400 CHMP7Q8WUX9 453 aaPredicted RBP14.57□□□□□ -0.08
TPM1-213ENST00000558400 GAPVD1Q14C86 1478 aa14.57□□□□□ -0.08
TPM1-213ENST00000558400 CLASP1Q7Z460 1538 aa14.56□□□□□ -0.08
TPM1-213ENST00000558400 BIVM-ERCC5R4GMW8 1640 aa14.55□□□□□ -0.08
TPM1-213ENST00000558400 SYNJ1O43426 1573 aa14.53□□□□□ -0.08
TPM1-213ENST00000558400 MAGI1Q96QZ7 1491 aaPredicted RBP14.52□□□□□ -0.08
TPM1-213ENST00000558400 SNAPC4Q5SXM2 1469 aa14.5□□□□□ -0.09
TPM1-213ENST00000558400 SYNJ2O15056 1496 aa14.47□□□□□ -0.09
TPM1-213ENST00000558400 ABCA5Q8WWZ7 1642 aa14.44□□□□□ -0.1
TPM1-213ENST00000558400 KIF27Q86VH2 1401 aa14.42□□□□□ -0.1
TPM1-213ENST00000558400 PLPPR3Q6T4P5 718 aa14.42□□□□□ -0.1
TPM1-213ENST00000558400 ERICH3Q5RHP9 1530 aa14.41□□□□□ -0.1
TPM1-213ENST00000558400 FHAD1B1AJZ9 1412 aa14.41□□□□□ -0.1
TPM1-213ENST00000558400 PBRM1Q86U86 1689 aa14.38□□□□□ -0.11
TPM1-213ENST00000558400 IGF1RP08069 1367 aa14.37□□□□□ -0.11
TPM1-213ENST00000558400 KIF13AQ9H1H9 1805 aa14.36□□□□□ -0.11
TPM1-213ENST00000558400 GRIN2AQ12879 1464 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms