RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 NISCHQ9Y2I1 1504 aa39.26■■■■□ 3.88
SNX1-203ENST00000558040 CCDC180Q9P1Z9 1646 aa34.55■■■■□ 3.12
SNX1-203ENST00000558040 ABCC9O60706 1549 aa32.97■■■□□ 2.87
SNX1-203ENST00000558040 ZCCHC6Q5VYS8 1495 aaKnown RBP32.89■■■□□ 2.86
SNX1-203ENST00000558040 DCAF1Q9Y4B6 1507 aa32.54■■■□□ 2.8
SNX1-203ENST00000558040 DCAF8L2P0C7V8 631 aa32.48■■■□□ 2.79
SNX1-203ENST00000558040 MYO15BQ96JP2 1530 aa32.37■■■□□ 2.77
SNX1-203ENST00000558040 NACADO15069 1562 aa32.29■■■□□ 2.76
SNX1-203ENST00000558040 RB1CC1Q8TDY2 1594 aa32.13■■■□□ 2.73
SNX1-203ENST00000558040 SCRIBQ14160 1630 aa31.6■■■□□ 2.65
SNX1-203ENST00000558040 SHROOM4Q9ULL8 1493 aa31.54■■■□□ 2.64
SNX1-203ENST00000558040 UNC13AQ9UPW8 1703 aa31.35■■■□□ 2.61
SNX1-203ENST00000558040 BICRAQ9NZM4 1560 aa31.06■■■□□ 2.56
SNX1-203ENST00000558040 PABPN1Q86U42 306 aaKnown RBP eCLIP30.95■■■□□ 2.55
SNX1-203ENST00000558040 CECR2Q9BXF3 1484 aa30.46■■■□□ 2.47
SNX1-203ENST00000558040 BAZ1AQ9NRL2 1556 aaPredicted RBP30.4■■■□□ 2.46
SNX1-203ENST00000558040 SMARCA4P51532 1647 aa30.29■■■□□ 2.44
SNX1-203ENST00000558040 MROH2BQ7Z745 1585 aa30.26■■■□□ 2.43
SNX1-203ENST00000558040 RSF1Q96T23 1441 aaPredicted RBP30.22■■■□□ 2.43
SNX1-203ENST00000558040 EIF4G1Q04637 1599 aaKnown RBP30.21■■■□□ 2.43
SNX1-203ENST00000558040 SUPT5HO00267 1087 aaKnown RBP30.12■■■□□ 2.41
SNX1-203ENST00000558040 WIZO95785 1651 aa29.98■■■□□ 2.39
SNX1-203ENST00000558040 PEG3Q9GZU2 1588 aa29.98■■■□□ 2.39
SNX1-203ENST00000558040 SMARCA2P51531 1590 aa29.95■■■□□ 2.39
SNX1-203ENST00000558040 ATAD2BQ9ULI0 1458 aa29.9■■■□□ 2.38
SNX1-203ENST00000558040 CC2D2AQ9P2K1 1620 aa29.87■■■□□ 2.37
SNX1-203ENST00000558040 NCAPD3P42695 1498 aa29.76■■■□□ 2.35
SNX1-203ENST00000558040 TOP2AP11388 1531 aaKnown RBP29.75■■■□□ 2.35
SNX1-203ENST00000558040 BAZ1BQ9UIG0 1483 aaKnown RBP29.74■■■□□ 2.35
SNX1-203ENST00000558040 HMGXB3Q12766 1538 aa29.72■■■□□ 2.35
SNX1-203ENST00000558040 DNAJC5BQ9UF47 199 aa29.42■■■□□ 2.3
SNX1-203ENST00000558040 CCDC88BA6NC98 1476 aa29.36■■■□□ 2.29
SNX1-203ENST00000558040 CFTRP13569 1480 aa28.96■■■□□ 2.23
SNX1-203ENST00000558040 CADPSQ9ULU8 1353 aa28.95■■■□□ 2.22
SNX1-203ENST00000558040 LAMC3Q9Y6N6 1575 aa28.87■■■□□ 2.21
SNX1-203ENST00000558040 PRDM2Q13029 1718 aa28.82■■■□□ 2.2
SNX1-203ENST00000558040 NESP48681 1621 aa28.76■■■□□ 2.2
SNX1-203ENST00000558040 PDS5BQ9NTI5 1447 aa28.66■■■□□ 2.18
SNX1-203ENST00000558040 FANCD2Q9BXW9 1451 aa28.63■■■□□ 2.17
SNX1-203ENST00000558040 CHIC1Q5VXU3 224 aa28.59■■■□□ 2.17
SNX1-203ENST00000558040 ABCC8Q09428 1581 aa28.55■■■□□ 2.16
SNX1-203ENST00000558040 CEP164Q9UPV0 1460 aa28.53■■■□□ 2.16
SNX1-203ENST00000558040 WRNQ14191 1432 aaPredicted RBP eCLIP28.51■■■□□ 2.15
SNX1-203ENST00000558040 KIF21AQ7Z4S6 1674 aa28.47■■■□□ 2.15
SNX1-203ENST00000558040 TRIM41Q8WV44 630 aa28.43■■■□□ 2.14
SNX1-203ENST00000558040 ERCC6Q03468 1493 aa28.4■■■□□ 2.14
SNX1-203ENST00000558040 SYNJ1O43426 1573 aa28.37■■■□□ 2.13
SNX1-203ENST00000558040 CUX1P39880 1505 aa28.35■■■□□ 2.13
SNX1-203ENST00000558040 TOP2BQ02880 1626 aa28.35■■■□□ 2.13
SNX1-203ENST00000558040 BIVM-ERCC5R4GMW8 1640 aa28.33■■■□□ 2.13
SNX1-203ENST00000558040 DNMBPQ6XZF7 1577 aa28.31■■■□□ 2.12
SNX1-203ENST00000558040 MRC2Q9UBG0 1479 aa28.3■■■□□ 2.12
SNX1-203ENST00000558040 URB2Q14146 1524 aaKnown RBP28.26■■■□□ 2.11
SNX1-203ENST00000558040 TOPBP1Q92547 1522 aa28.26■■■□□ 2.11
SNX1-203ENST00000558040 THOC2Q8NI27 1593 aaKnown RBP28.17■■■□□ 2.1
SNX1-203ENST00000558040 WDR62O43379 1518 aa28.17■■■□□ 2.1
SNX1-203ENST00000558040 FGD5Q6ZNL6 1462 aa28.13■■■□□ 2.09
SNX1-203ENST00000558040 POLA1P09884 1462 aaPredicted RBP28.07■■■□□ 2.08
SNX1-203ENST00000558040 SOGA1O94964 1423 aa27.98■■■□□ 2.07
SNX1-203ENST00000558040 RAD54L2Q9Y4B4 1467 aa27.92■■■□□ 2.06
SNX1-203ENST00000558040 EEA1Q15075 1411 aa27.92■■■□□ 2.06
SNX1-203ENST00000558040 ABCA10Q8WWZ4 1543 aa27.91■■■□□ 2.06
SNX1-203ENST00000558040 CUX2O14529 1486 aa27.89■■■□□ 2.06
SNX1-203ENST00000558040 IFT140Q96RY7 1462 aa27.89■■■□□ 2.06
SNX1-203ENST00000558040 TARBP1Q13395 1621 aaKnown RBP27.87■■■□□ 2.05
SNX1-203ENST00000558040 KIF27Q86VH2 1401 aa27.86■■■□□ 2.05
SNX1-203ENST00000558040 WDR97A6NE52 1622 aa27.85■■■□□ 2.05
SNX1-203ENST00000558040 FAM9AQ8IZU1 332 aaPredicted RBP27.8■■■□□ 2.04
SNX1-203ENST00000558040 RUSC2Q8N2Y8 1516 aa27.79■■■□□ 2.04
SNX1-203ENST00000558040 ABCA5Q8WWZ7 1642 aa27.71■■■□□ 2.03
SNX1-203ENST00000558040 CSRNP3Q8WYN3 585 aa27.71■■■□□ 2.03
SNX1-203ENST00000558040 TDRD9Q8NDG6 1382 aaKnown RBP27.7■■■□□ 2.02
SNX1-203ENST00000558040 GAPVD1Q14C86 1478 aa27.68■■■□□ 2.02
SNX1-203ENST00000558040 ZNF608Q9ULD9 1512 aaPredicted RBP27.64■■■□□ 2.02
SNX1-203ENST00000558040 AQRO60306 1485 aaKnown RBP eCLIP27.61■■■□□ 2.017e-7■■■■■ 31.9
SNX1-203ENST00000558040 EIF4G3O43432 1585 aaKnown RBP27.6■■■□□ 2.01
SNX1-203ENST00000558040 ERICH3Q5RHP9 1530 aa27.6■■■□□ 2.01
SNX1-203ENST00000558040 IGF1RP08069 1367 aa27.6■■■□□ 2.01
SNX1-203ENST00000558040 GRIN2BQ13224 1484 aa27.57■■■□□ 2
SNX1-203ENST00000558040 PBRM1Q86U86 1689 aa27.56■■■□□ 2
SNX1-203ENST00000558040 KIF21BO75037 1637 aa27.53■■■□□ 2
SNX1-203ENST00000558040 CUL7Q14999 1698 aa27.52■■■□□ 2
SNX1-203ENST00000558040 PRXQ9BXM0 1461 aa27.51■■□□□ 1.99
SNX1-203ENST00000558040 CARMIL1Q5VZK9 1371 aa27.48■■□□□ 1.99
SNX1-203ENST00000558040 GOLGA3Q08378 1498 aa27.46■■□□□ 1.99
SNX1-203ENST00000558040 RAPGEF2Q9Y4G8 1499 aa27.42■■□□□ 1.98
SNX1-203ENST00000558040 MAGI1Q96QZ7 1491 aaPredicted RBP27.41■■□□□ 1.98
SNX1-203ENST00000558040 ADAMTS12P58397 1594 aa27.4■■□□□ 1.98
SNX1-203ENST00000558040 SNAPC4Q5SXM2 1469 aa27.4■■□□□ 1.98
SNX1-203ENST00000558040 LOC105371045A0A1W2PR82 267 aa27.4■■□□□ 1.98
SNX1-203ENST00000558040 FHAD1B1AJZ9 1412 aa27.4■■□□□ 1.98
SNX1-203ENST00000558040 EHMT2Q96KQ7 1210 aa27.36■■□□□ 1.97
SNX1-203ENST00000558040 UBTFP17480 764 aaKnown RBP27.3■■□□□ 1.96
SNX1-203ENST00000558040 SYNJ2O15056 1496 aa27.28■■□□□ 1.96
SNX1-203ENST00000558040 TNIKQ9UKE5 1360 aa27.25■■□□□ 1.95
SNX1-203ENST00000558040 CHMP7Q8WUX9 453 aaPredicted RBP27.21■■□□□ 1.95
SNX1-203ENST00000558040 GRIN2AQ12879 1464 aa27.2■■□□□ 1.95
SNX1-203ENST00000558040 FBLN2P98095 1184 aa27.15■■□□□ 1.94
SNX1-203ENST00000558040 CTTNBP2Q8WZ74 1663 aa27.11■■□□□ 1.93
SNX1-203ENST00000558040 CHD1O14646 1710 aa27.09■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms