RNA–Protein interactions for RNA: ENST00000557673.5

NEK9-211, Transcript of NIMA related kinase 9, humanhuman

TSL 3

Gene NEK9, Length 657 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-211ENST00000557673 NISCHQ9Y2I1 1504 aa41.37■■■■■ 4.21
NEK9-211ENST00000557673 ABCC9O60706 1549 aa37.39■■■■□ 3.58
NEK9-211ENST00000557673 CCDC180Q9P1Z9 1646 aa37.19■■■■□ 3.54
NEK9-211ENST00000557673 RB1CC1Q8TDY2 1594 aa35.55■■■■□ 3.28
NEK9-211ENST00000557673 DNAJC5BQ9UF47 199 aa35.42■■■■□ 3.26
NEK9-211ENST00000557673 NACADO15069 1562 aa35.26■■■■□ 3.24
NEK9-211ENST00000557673 DCAF8L2P0C7V8 631 aa35.09■■■■□ 3.21
NEK9-211ENST00000557673 PABPN1Q86U42 306 aaKnown RBP eCLIP34.81■■■■□ 3.16
NEK9-211ENST00000557673 MYO15BQ96JP2 1530 aa34.74■■■■□ 3.15
NEK9-211ENST00000557673 UNC13AQ9UPW8 1703 aa34.58■■■■□ 3.13
NEK9-211ENST00000557673 BICRAQ9NZM4 1560 aa34.42■■■■□ 3.1
NEK9-211ENST00000557673 ZCCHC6Q5VYS8 1495 aaKnown RBP34.22■■■■□ 3.07
NEK9-211ENST00000557673 DCAF1Q9Y4B6 1507 aa34.2■■■■□ 3.06
NEK9-211ENST00000557673 SHROOM4Q9ULL8 1493 aa34.09■■■■□ 3.05
NEK9-211ENST00000557673 SCRIBQ14160 1630 aa33.84■■■■□ 3.01
NEK9-211ENST00000557673 CECR2Q9BXF3 1484 aa33.75■■■□□ 2.99
NEK9-211ENST00000557673 CC2D2AQ9P2K1 1620 aa33.75■■■□□ 2.99
NEK9-211ENST00000557673 EIF4G1Q04637 1599 aaKnown RBP33.64■■■□□ 2.98
NEK9-211ENST00000557673 DNAJC5Q9H3Z4 198 aa32.78■■■□□ 2.84
NEK9-211ENST00000557673 NCAPD3P42695 1498 aa32.57■■■□□ 2.8
NEK9-211ENST00000557673 ATAD2BQ9ULI0 1458 aa32.41■■■□□ 2.78
NEK9-211ENST00000557673 CUX2O14529 1486 aa32.38■■■□□ 2.77
NEK9-211ENST00000557673 ERCC6Q03468 1493 aa32.37■■■□□ 2.77
NEK9-211ENST00000557673 SMARCA2P51531 1590 aa32.34■■■□□ 2.77
NEK9-211ENST00000557673 HMGXB3Q12766 1538 aa32.28■■■□□ 2.76
NEK9-211ENST00000557673 SMARCA4P51532 1647 aa32.28■■■□□ 2.76
NEK9-211ENST00000557673 BAZ1AQ9NRL2 1556 aaPredicted RBP32.15■■■□□ 2.74
NEK9-211ENST00000557673 BAZ1BQ9UIG0 1483 aaKnown RBP32.1■■■□□ 2.73
NEK9-211ENST00000557673 NESP48681 1621 aa32.02■■■□□ 2.72
NEK9-211ENST00000557673 PEG3Q9GZU2 1588 aa32■■■□□ 2.71
NEK9-211ENST00000557673 LAMC3Q9Y6N6 1575 aa31.85■■■□□ 2.69
NEK9-211ENST00000557673 MROH2BQ7Z745 1585 aa31.83■■■□□ 2.69
NEK9-211ENST00000557673 PDS5BQ9NTI5 1447 aa31.74■■■□□ 2.67
NEK9-211ENST00000557673 THOC2Q8NI27 1593 aaKnown RBP31.73■■■□□ 2.67
NEK9-211ENST00000557673 CADPSQ9ULU8 1353 aa31.58■■■□□ 2.65
NEK9-211ENST00000557673 KIF21AQ7Z4S6 1674 aa31.57■■■□□ 2.64
NEK9-211ENST00000557673 MRC2Q9UBG0 1479 aa31.41■■■□□ 2.62
NEK9-211ENST00000557673 WIZO95785 1651 aa31.41■■■□□ 2.62
NEK9-211ENST00000557673 WDR62O43379 1518 aa31.3■■■□□ 2.6
NEK9-211ENST00000557673 CEP164Q9UPV0 1460 aa31.25■■■□□ 2.59
NEK9-211ENST00000557673 TRIM41Q8WV44 630 aa31.21■■■□□ 2.59
NEK9-211ENST00000557673 FANCD2Q9BXW9 1451 aa31.19■■■□□ 2.58
NEK9-211ENST00000557673 CFTRP13569 1480 aa31.15■■■□□ 2.58
NEK9-211ENST00000557673 RSF1Q96T23 1441 aaPredicted RBP31.15■■■□□ 2.58
NEK9-211ENST00000557673 TOP2AP11388 1531 aaKnown RBP31.06■■■□□ 2.56
NEK9-211ENST00000557673 OSCARQ8IYS5 282 aa30.94■■■□□ 2.54
NEK9-211ENST00000557673 URB2Q14146 1524 aaKnown RBP30.89■■■□□ 2.54
NEK9-211ENST00000557673 PRDM2Q13029 1718 aa30.72■■■□□ 2.51
NEK9-211ENST00000557673 CCDC88BA6NC98 1476 aa30.71■■■□□ 2.51
NEK9-211ENST00000557673 IFT140Q96RY7 1462 aa30.65■■■□□ 2.5
NEK9-211ENST00000557673 ABCC8Q09428 1581 aa30.58■■■□□ 2.49
NEK9-211ENST00000557673 TOPBP1Q92547 1522 aa30.55■■■□□ 2.48
NEK9-211ENST00000557673 ZNF608Q9ULD9 1512 aaPredicted RBP30.54■■■□□ 2.48
NEK9-211ENST00000557673 DNMBPQ6XZF7 1577 aa30.42■■■□□ 2.46
NEK9-211ENST00000557673 RIMBP3CA6NJZ7 1639 aa30.4■■■□□ 2.46
NEK9-211ENST00000557673 RIMBP3BA6NNM3 1639 aa30.4■■■□□ 2.46
NEK9-211ENST00000557673 RIMBP3Q9UFD9 1639 aa30.4■■■□□ 2.46
NEK9-211ENST00000557673 EIF4G3O43432 1585 aaKnown RBP30.35■■■□□ 2.45
NEK9-211ENST00000557673 ARHGEF11O15085 1522 aa30.32■■■□□ 2.44
NEK9-211ENST00000557673 AQRO60306 1485 aaKnown RBP eCLIP30.28■■■□□ 2.44
NEK9-211ENST00000557673 TARBP1Q13395 1621 aaKnown RBP30.25■■■□□ 2.43
NEK9-211ENST00000557673 POLA1P09884 1462 aaPredicted RBP30.23■■■□□ 2.43
NEK9-211ENST00000557673 FBLN2P98095 1184 aa30.2■■■□□ 2.43
NEK9-211ENST00000557673 CYB5RLQ6IPT4 315 aa30.18■■■□□ 2.42
NEK9-211ENST00000557673 SOGA1O94964 1423 aa30.14■■■□□ 2.42
NEK9-211ENST00000557673 CHD1O14646 1710 aa30.13■■■□□ 2.41
NEK9-211ENST00000557673 RAD54L2Q9Y4B4 1467 aa30.1■■■□□ 2.41
NEK9-211ENST00000557673 TDRD9Q8NDG6 1382 aaKnown RBP30.08■■■□□ 2.41
NEK9-211ENST00000557673 WDR97A6NE52 1622 aa30.03■■■□□ 2.4
NEK9-211ENST00000557673 FGD5Q6ZNL6 1462 aa30■■■□□ 2.39
NEK9-211ENST00000557673 ARAP1Q96P48 1450 aa29.99■■■□□ 2.39
NEK9-211ENST00000557673 CHMP7Q8WUX9 453 aaPredicted RBP29.97■■■□□ 2.39
NEK9-211ENST00000557673 SNAPC4Q5SXM2 1469 aa29.95■■■□□ 2.39
NEK9-211ENST00000557673 TRHP20396 242 aaPredicted RBP29.94■■■□□ 2.38
NEK9-211ENST00000557673 MAGI1Q96QZ7 1491 aaPredicted RBP29.93■■■□□ 2.38
NEK9-211ENST00000557673 CUX1P39880 1505 aa29.91■■■□□ 2.38
NEK9-211ENST00000557673 GRIN2BQ13224 1484 aa29.9■■■□□ 2.38
NEK9-211ENST00000557673 SYNJ1O43426 1573 aa29.86■■■□□ 2.37
NEK9-211ENST00000557673 SUPT5HO00267 1087 aaKnown RBP29.85■■■□□ 2.37
NEK9-211ENST00000557673 CLASP1Q7Z460 1538 aa29.83■■■□□ 2.37
NEK9-211ENST00000557673 SYNJ2O15056 1496 aa29.81■■■□□ 2.36
NEK9-211ENST00000557673 GAPVD1Q14C86 1478 aa29.75■■■□□ 2.35
NEK9-211ENST00000557673 ABCA10Q8WWZ4 1543 aa29.69■■■□□ 2.34
NEK9-211ENST00000557673 PBRM1Q86U86 1689 aa29.65■■■□□ 2.34
NEK9-211ENST00000557673 WRNQ14191 1432 aaPredicted RBP eCLIP29.59■■■□□ 2.33
NEK9-211ENST00000557673 ABCA5Q8WWZ7 1642 aa29.59■■■□□ 2.33
NEK9-211ENST00000557673 GRIN2AQ12879 1464 aa29.48■■■□□ 2.31
NEK9-211ENST00000557673 TOP2BQ02880 1626 aa29.41■■■□□ 2.3
NEK9-211ENST00000557673 NUP160Q12769 1436 aa29.4■■■□□ 2.3
NEK9-211ENST00000557673 FHAD1B1AJZ9 1412 aa29.39■■■□□ 2.3
NEK9-211ENST00000557673 ADAMTS12P58397 1594 aa29.39■■■□□ 2.29
NEK9-211ENST00000557673 BIVM-ERCC5R4GMW8 1640 aa29.38■■■□□ 2.29
NEK9-211ENST00000557673 AEBP2Q6ZN18 517 aaPredicted RBP29.33■■■□□ 2.29
NEK9-211ENST00000557673 CEP170Q5SW79 1584 aa29.33■■■□□ 2.29
NEK9-211ENST00000557673 ERICH3Q5RHP9 1530 aa29.32■■■□□ 2.28
NEK9-211ENST00000557673 ERCC6L2Q5T890 1561 aa29.3■■■□□ 2.28
NEK9-211ENST00000557673 SHROOM2Q13796 1616 aa29.24■■■□□ 2.27
NEK9-211ENST00000557673 JPH4Q96JJ6 628 aa29.16■■■□□ 2.26
NEK9-211ENST00000557673 PRG4Q92954 1404 aaPredicted RBP29.15■■■□□ 2.26
NEK9-211ENST00000557673 NPM1P06748 294 aaKnown RBP eCLIP29.01■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 783.9 ms