RNA–Protein interactions for RNA: ENST00000557559.1

PRKCH-225, Transcript of protein kinase C eta, humanhuman

TSL 3

Gene PRKCH, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCH-225ENST00000557559 NISCHQ9Y2I1 1504 aa18.79■□□□□ 0.6
PRKCH-225ENST00000557559 ABCC9O60706 1549 aa17.22■□□□□ 0.35
PRKCH-225ENST00000557559 AEBP2Q6ZN18 517 aaPredicted RBP17.15■□□□□ 0.34
PRKCH-225ENST00000557559 CCDC180Q9P1Z9 1646 aa17.08■□□□□ 0.32
PRKCH-225ENST00000557559 CHIC1Q5VXU3 224 aa16.74■□□□□ 0.27
PRKCH-225ENST00000557559 RB1CC1Q8TDY2 1594 aa16.37■□□□□ 0.21
PRKCH-225ENST00000557559 DNAJC5BQ9UF47 199 aa16.29■□□□□ 0.2
PRKCH-225ENST00000557559 NACADO15069 1562 aa16.18■□□□□ 0.18
PRKCH-225ENST00000557559 UNC13AQ9UPW8 1703 aa15.93■□□□□ 0.14
PRKCH-225ENST00000557559 PABPN1Q86U42 306 aaKnown RBP eCLIP15.91■□□□□ 0.14
PRKCH-225ENST00000557559 MYO15BQ96JP2 1530 aa15.89■□□□□ 0.13
PRKCH-225ENST00000557559 DCAF8L2P0C7V8 631 aa15.86■□□□□ 0.13
PRKCH-225ENST00000557559 BICRAQ9NZM4 1560 aa15.83■□□□□ 0.12
PRKCH-225ENST00000557559 SHROOM4Q9ULL8 1493 aa15.74■□□□□ 0.11
PRKCH-225ENST00000557559 CECR2Q9BXF3 1484 aa15.59■□□□□ 0.09
PRKCH-225ENST00000557559 CC2D2AQ9P2K1 1620 aa15.58■□□□□ 0.09
PRKCH-225ENST00000557559 DCAF1Q9Y4B6 1507 aa15.58■□□□□ 0.08
PRKCH-225ENST00000557559 ZCCHC6Q5VYS8 1495 aaKnown RBP15.54■□□□□ 0.08
PRKCH-225ENST00000557559 EIF4G1Q04637 1599 aaKnown RBP15.49■□□□□ 0.07
PRKCH-225ENST00000557559 SCRIBQ14160 1630 aa15.46■□□□□ 0.06
PRKCH-225ENST00000557559 DNAJC5Q9H3Z4 198 aa15.26■□□□□ 0.03
PRKCH-225ENST00000557559 CUX2O14529 1486 aa15.07■□□□□ 0
PRKCH-225ENST00000557559 ERCC6Q03468 1493 aa14.96□□□□□ -0.01
PRKCH-225ENST00000557559 NCAPD3P42695 1498 aa14.9□□□□□ -0.02
PRKCH-225ENST00000557559 HMGXB3Q12766 1538 aa14.82□□□□□ -0.04
PRKCH-225ENST00000557559 SMARCA2P51531 1590 aa14.81□□□□□ -0.04
PRKCH-225ENST00000557559 PHF23Q9BUL5 403 aaPredicted RBP14.8□□□□□ -0.04
PRKCH-225ENST00000557559 ATAD2BQ9ULI0 1458 aa14.8□□□□□ -0.04
PRKCH-225ENST00000557559 SMARCA4P51532 1647 aa14.74□□□□□ -0.05
PRKCH-225ENST00000557559 THOC2Q8NI27 1593 aaKnown RBP14.69□□□□□ -0.06
PRKCH-225ENST00000557559 NESP48681 1621 aa14.69□□□□□ -0.06
PRKCH-225ENST00000557559 BAZ1BQ9UIG0 1483 aaKnown RBP14.68□□□□□ -0.06
PRKCH-225ENST00000557559 LAMC3Q9Y6N6 1575 aa14.66□□□□□ -0.06
PRKCH-225ENST00000557559 BAZ1AQ9NRL2 1556 aaPredicted RBP14.65□□□□□ -0.06
PRKCH-225ENST00000557559 PEG3Q9GZU2 1588 aa14.64□□□□□ -0.07
PRKCH-225ENST00000557559 PDS5BQ9NTI5 1447 aa14.57□□□□□ -0.08
PRKCH-225ENST00000557559 KIF21AQ7Z4S6 1674 aa14.55□□□□□ -0.08
PRKCH-225ENST00000557559 MRC2Q9UBG0 1479 aa14.45□□□□□ -0.1
PRKCH-225ENST00000557559 TRIM41Q8WV44 630 aa14.45□□□□□ -0.1
PRKCH-225ENST00000557559 WDR62O43379 1518 aa14.44□□□□□ -0.1
PRKCH-225ENST00000557559 MROH2BQ7Z745 1585 aa14.43□□□□□ -0.1
PRKCH-225ENST00000557559 SENP3Q9H4L4 574 aaPredicted RBP14.43□□□□□ -0.1
PRKCH-225ENST00000557559 CADPSQ9ULU8 1353 aa14.41□□□□□ -0.1
PRKCH-225ENST00000557559 CEP164Q9UPV0 1460 aa14.35□□□□□ -0.11
PRKCH-225ENST00000557559 FANCD2Q9BXW9 1451 aa14.27□□□□□ -0.12
PRKCH-225ENST00000557559 WIZO95785 1651 aa14.25□□□□□ -0.13
PRKCH-225ENST00000557559 OSCARQ8IYS5 282 aa14.23□□□□□ -0.13
PRKCH-225ENST00000557559 CFTRP13569 1480 aa14.21□□□□□ -0.13
PRKCH-225ENST00000557559 URB2Q14146 1524 aaKnown RBP14.15□□□□□ -0.14
PRKCH-225ENST00000557559 TOP2AP11388 1531 aaKnown RBP14.12□□□□□ -0.15
PRKCH-225ENST00000557559 PRDM2Q13029 1718 aa14.12□□□□□ -0.15
PRKCH-225ENST00000557559 RIMBP3CA6NJZ7 1639 aa14.12□□□□□ -0.15
PRKCH-225ENST00000557559 RIMBP3BA6NNM3 1639 aa14.12□□□□□ -0.15
PRKCH-225ENST00000557559 RIMBP3Q9UFD9 1639 aa14.12□□□□□ -0.15
PRKCH-225ENST00000557559 IFT140Q96RY7 1462 aa14.06□□□□□ -0.16
PRKCH-225ENST00000557559 ARHGEF11O15085 1522 aa14.05□□□□□ -0.16
PRKCH-225ENST00000557559 RSF1Q96T23 1441 aaPredicted RBP14.02□□□□□ -0.16
PRKCH-225ENST00000557559 ZNF608Q9ULD9 1512 aaPredicted RBP13.99□□□□□ -0.17
PRKCH-225ENST00000557559 EIF4G3O43432 1585 aaKnown RBP13.98□□□□□ -0.17
PRKCH-225ENST00000557559 ABCC8Q09428 1581 aa13.97□□□□□ -0.17
PRKCH-225ENST00000557559 TOPBP1Q92547 1522 aa13.96□□□□□ -0.17
PRKCH-225ENST00000557559 DNMBPQ6XZF7 1577 aa13.92□□□□□ -0.18
PRKCH-225ENST00000557559 CHD1O14646 1710 aa13.91□□□□□ -0.18
PRKCH-225ENST00000557559 CCDC88BA6NC98 1476 aa13.89□□□□□ -0.19
PRKCH-225ENST00000557559 ARAP1Q96P48 1450 aa13.87□□□□□ -0.19
PRKCH-225ENST00000557559 TARBP1Q13395 1621 aaKnown RBP13.87□□□□□ -0.19
PRKCH-225ENST00000557559 CYB5RLQ6IPT4 315 aa13.87□□□□□ -0.19
PRKCH-225ENST00000557559 TRHP20396 242 aaPredicted RBP13.84□□□□□ -0.19
PRKCH-225ENST00000557559 AQRO60306 1485 aaKnown RBP eCLIP13.82□□□□□ -0.2
PRKCH-225ENST00000557559 WDR97A6NE52 1622 aa13.81□□□□□ -0.2
PRKCH-225ENST00000557559 POLA1P09884 1462 aaPredicted RBP13.8□□□□□ -0.2
PRKCH-225ENST00000557559 FBLN2P98095 1184 aa13.78□□□□□ -0.2
PRKCH-225ENST00000557559 CLASP1Q7Z460 1538 aa13.76□□□□□ -0.21
PRKCH-225ENST00000557559 SYNJ1O43426 1573 aa13.75□□□□□ -0.21
PRKCH-225ENST00000557559 MAGI1Q96QZ7 1491 aaPredicted RBP13.73□□□□□ -0.21
PRKCH-225ENST00000557559 SNAPC4Q5SXM2 1469 aa13.72□□□□□ -0.21
PRKCH-225ENST00000557559 SOGA1O94964 1423 aa13.71□□□□□ -0.22
PRKCH-225ENST00000557559 RAD54L2Q9Y4B4 1467 aa13.7□□□□□ -0.22
PRKCH-225ENST00000557559 TDRD9Q8NDG6 1382 aaKnown RBP13.68□□□□□ -0.22
PRKCH-225ENST00000557559 SYNJ2O15056 1496 aa13.67□□□□□ -0.22
PRKCH-225ENST00000557559 GRIN2BQ13224 1484 aa13.67□□□□□ -0.22
PRKCH-225ENST00000557559 FGD5Q6ZNL6 1462 aa13.67□□□□□ -0.22
PRKCH-225ENST00000557559 CHMP7Q8WUX9 453 aaPredicted RBP13.66□□□□□ -0.22
PRKCH-225ENST00000557559 GAPVD1Q14C86 1478 aa13.61□□□□□ -0.23
PRKCH-225ENST00000557559 PBRM1Q86U86 1689 aa13.61□□□□□ -0.23
PRKCH-225ENST00000557559 CUX1P39880 1505 aa13.59□□□□□ -0.23
PRKCH-225ENST00000557559 PLPPR3Q6T4P5 718 aa13.55□□□□□ -0.24
PRKCH-225ENST00000557559 ABCA5Q8WWZ7 1642 aa13.54□□□□□ -0.24
PRKCH-225ENST00000557559 ABCA10Q8WWZ4 1543 aa13.53□□□□□ -0.24
PRKCH-225ENST00000557559 GRIN2AQ12879 1464 aa13.49□□□□□ -0.25
PRKCH-225ENST00000557559 ADAMTS12P58397 1594 aa13.47□□□□□ -0.25
PRKCH-225ENST00000557559 CEP170Q5SW79 1584 aa13.46□□□□□ -0.25
PRKCH-225ENST00000557559 FOXD1Q16676 465 aa13.45□□□□□ -0.26
PRKCH-225ENST00000557559 SHROOM2Q13796 1616 aa13.45□□□□□ -0.26
PRKCH-225ENST00000557559 NUP160Q12769 1436 aa13.45□□□□□ -0.26
PRKCH-225ENST00000557559 ERCC6L2Q5T890 1561 aa13.44□□□□□ -0.26
PRKCH-225ENST00000557559 WRNQ14191 1432 aaPredicted RBP eCLIP13.41□□□□□ -0.26
PRKCH-225ENST00000557559 FHAD1B1AJZ9 1412 aa13.39□□□□□ -0.27
PRKCH-225ENST00000557559 KIF13AQ9H1H9 1805 aa13.39□□□□□ -0.27
PRKCH-225ENST00000557559 ERICH3Q5RHP9 1530 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms