RNA–Protein interactions for RNA: ENST00000557493.1

TGFB3-207, Transcript of transforming growth factor beta 3, humanhuman

TSL 4

Gene TGFB3, Length 608 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TGFB3-207ENST00000557493 NISCHQ9Y2I1 1504 aa24.44■■□□□ 1.5
TGFB3-207ENST00000557493 ABCC9O60706 1549 aa22.6■■□□□ 1.21
TGFB3-207ENST00000557493 CCDC180Q9P1Z9 1646 aa22■■□□□ 1.11
TGFB3-207ENST00000557493 DNAJC5BQ9UF47 199 aa21.68■■□□□ 1.06
TGFB3-207ENST00000557493 RB1CC1Q8TDY2 1594 aa21.26■□□□□ 0.99
TGFB3-207ENST00000557493 NACADO15069 1562 aa20.98■□□□□ 0.95
TGFB3-207ENST00000557493 PABPN1Q86U42 306 aaKnown RBP eCLIP20.96■□□□□ 0.95
TGFB3-207ENST00000557493 DCAF8L2P0C7V8 631 aa20.78■□□□□ 0.92
TGFB3-207ENST00000557493 UNC13AQ9UPW8 1703 aa20.62■□□□□ 0.89
TGFB3-207ENST00000557493 BICRAQ9NZM4 1560 aa20.61■□□□□ 0.89
TGFB3-207ENST00000557493 ZCCHC6Q5VYS8 1495 aaKnown RBP20.53■□□□□ 0.88
TGFB3-207ENST00000557493 MYO15BQ96JP2 1530 aa20.52■□□□□ 0.87
TGFB3-207ENST00000557493 CECR2Q9BXF3 1484 aa20.43■□□□□ 0.86
TGFB3-207ENST00000557493 DNAJC5Q9H3Z4 198 aa20.37■□□□□ 0.85
TGFB3-207ENST00000557493 SHROOM4Q9ULL8 1493 aa20.37■□□□□ 0.85
TGFB3-207ENST00000557493 CC2D2AQ9P2K1 1620 aa20.35■□□□□ 0.85
TGFB3-207ENST00000557493 DCAF1Q9Y4B6 1507 aa20.29■□□□□ 0.84
TGFB3-207ENST00000557493 EIF4G1Q04637 1599 aaKnown RBP20.19■□□□□ 0.82
TGFB3-207ENST00000557493 SCRIBQ14160 1630 aa20.02■□□□□ 0.8
TGFB3-207ENST00000557493 CUX2O14529 1486 aa19.74■□□□□ 0.75
TGFB3-207ENST00000557493 ERCC6Q03468 1493 aa19.59■□□□□ 0.73
TGFB3-207ENST00000557493 NCAPD3P42695 1498 aa19.4■□□□□ 0.7
TGFB3-207ENST00000557493 ATAD2BQ9ULI0 1458 aa19.25■□□□□ 0.67
TGFB3-207ENST00000557493 TRIM41Q8WV44 630 aa19.25■□□□□ 0.67
TGFB3-207ENST00000557493 NESP48681 1621 aa19.22■□□□□ 0.67
TGFB3-207ENST00000557493 AEBP2Q6ZN18 517 aaPredicted RBP19.22■□□□□ 0.67
TGFB3-207ENST00000557493 HMGXB3Q12766 1538 aa19.18■□□□□ 0.66
TGFB3-207ENST00000557493 SMARCA2P51531 1590 aa19.16■□□□□ 0.66
TGFB3-207ENST00000557493 THOC2Q8NI27 1593 aaKnown RBP19.14■□□□□ 0.65
TGFB3-207ENST00000557493 SMARCA4P51532 1647 aa19.04■□□□□ 0.64
TGFB3-207ENST00000557493 BAZ1BQ9UIG0 1483 aaKnown RBP19.03■□□□□ 0.64
TGFB3-207ENST00000557493 LAMC3Q9Y6N6 1575 aa19.02■□□□□ 0.63
TGFB3-207ENST00000557493 PDS5BQ9NTI5 1447 aa18.99■□□□□ 0.63
TGFB3-207ENST00000557493 CHIC1Q5VXU3 224 aa18.98■□□□□ 0.63
TGFB3-207ENST00000557493 BAZ1AQ9NRL2 1556 aaPredicted RBP18.93■□□□□ 0.62
TGFB3-207ENST00000557493 KIF21AQ7Z4S6 1674 aa18.9■□□□□ 0.62
TGFB3-207ENST00000557493 PEG3Q9GZU2 1588 aa18.87■□□□□ 0.61
TGFB3-207ENST00000557493 RSF1Q96T23 1441 aaPredicted RBP18.84■□□□□ 0.61
TGFB3-207ENST00000557493 MROH2BQ7Z745 1585 aa18.83■□□□□ 0.6
TGFB3-207ENST00000557493 MRC2Q9UBG0 1479 aa18.83■□□□□ 0.6
TGFB3-207ENST00000557493 SUPT5HO00267 1087 aaKnown RBP18.82■□□□□ 0.6
TGFB3-207ENST00000557493 CADPSQ9ULU8 1353 aa18.79■□□□□ 0.6
TGFB3-207ENST00000557493 WDR62O43379 1518 aa18.78■□□□□ 0.6
TGFB3-207ENST00000557493 OSCARQ8IYS5 282 aa18.75■□□□□ 0.59
TGFB3-207ENST00000557493 WIZO95785 1651 aa18.68■□□□□ 0.58
TGFB3-207ENST00000557493 CEP164Q9UPV0 1460 aa18.65■□□□□ 0.58
TGFB3-207ENST00000557493 TOP2AP11388 1531 aaKnown RBP18.56■□□□□ 0.56
TGFB3-207ENST00000557493 FANCD2Q9BXW9 1451 aa18.56■□□□□ 0.56
TGFB3-207ENST00000557493 RIMBP3CA6NJZ7 1639 aa18.49■□□□□ 0.55
TGFB3-207ENST00000557493 RIMBP3BA6NNM3 1639 aa18.49■□□□□ 0.55
TGFB3-207ENST00000557493 RIMBP3Q9UFD9 1639 aa18.49■□□□□ 0.55
TGFB3-207ENST00000557493 CFTRP13569 1480 aa18.44■□□□□ 0.54
TGFB3-207ENST00000557493 ARHGEF11O15085 1522 aa18.42■□□□□ 0.54
TGFB3-207ENST00000557493 URB2Q14146 1524 aaKnown RBP18.42■□□□□ 0.54
TGFB3-207ENST00000557493 TRHP20396 242 aaPredicted RBP18.35■□□□□ 0.53
TGFB3-207ENST00000557493 CYB5RLQ6IPT4 315 aa18.35■□□□□ 0.53
TGFB3-207ENST00000557493 IFT140Q96RY7 1462 aa18.3■□□□□ 0.52
TGFB3-207ENST00000557493 ZNF608Q9ULD9 1512 aaPredicted RBP18.28■□□□□ 0.52
TGFB3-207ENST00000557493 CCDC88BA6NC98 1476 aa18.27■□□□□ 0.52
TGFB3-207ENST00000557493 ARAP1Q96P48 1450 aa18.2■□□□□ 0.5
TGFB3-207ENST00000557493 EIF4G3O43432 1585 aaKnown RBP18.14■□□□□ 0.49
TGFB3-207ENST00000557493 TOPBP1Q92547 1522 aa18.13■□□□□ 0.49
TGFB3-207ENST00000557493 FBLN2P98095 1184 aa18.1■□□□□ 0.49
TGFB3-207ENST00000557493 ABCC8Q09428 1581 aa18.08■□□□□ 0.49
TGFB3-207ENST00000557493 PRDM2Q13029 1718 aa18.07■□□□□ 0.48
TGFB3-207ENST00000557493 AQRO60306 1485 aaKnown RBP eCLIP18.07■□□□□ 0.48
TGFB3-207ENST00000557493 CHD1O14646 1710 aa18.06■□□□□ 0.48
TGFB3-207ENST00000557493 DNMBPQ6XZF7 1577 aa18.01■□□□□ 0.47
TGFB3-207ENST00000557493 TARBP1Q13395 1621 aaKnown RBP17.98■□□□□ 0.47
TGFB3-207ENST00000557493 POLA1P09884 1462 aaPredicted RBP17.92■□□□□ 0.46
TGFB3-207ENST00000557493 CLASP1Q7Z460 1538 aa17.91■□□□□ 0.46
TGFB3-207ENST00000557493 CHMP7Q8WUX9 453 aaPredicted RBP17.88■□□□□ 0.45
TGFB3-207ENST00000557493 TDRD9Q8NDG6 1382 aaKnown RBP17.88■□□□□ 0.45
TGFB3-207ENST00000557493 SNAPC4Q5SXM2 1469 aa17.87■□□□□ 0.45
TGFB3-207ENST00000557493 SYNJ1O43426 1573 aa17.87■□□□□ 0.45
TGFB3-207ENST00000557493 RAD54L2Q9Y4B4 1467 aa17.85■□□□□ 0.45
TGFB3-207ENST00000557493 SOGA1O94964 1423 aa17.84■□□□□ 0.45
TGFB3-207ENST00000557493 MAGI1Q96QZ7 1491 aaPredicted RBP17.81■□□□□ 0.44
TGFB3-207ENST00000557493 GAPVD1Q14C86 1478 aa17.8■□□□□ 0.44
TGFB3-207ENST00000557493 WDR97A6NE52 1622 aa17.8■□□□□ 0.44
TGFB3-207ENST00000557493 WRNQ14191 1432 aaPredicted RBP eCLIP17.78■□□□□ 0.44
TGFB3-207ENST00000557493 SYNJ2O15056 1496 aa17.75■□□□□ 0.43
TGFB3-207ENST00000557493 GRIN2BQ13224 1484 aa17.75■□□□□ 0.43
TGFB3-207ENST00000557493 FGD5Q6ZNL6 1462 aa17.72■□□□□ 0.43
TGFB3-207ENST00000557493 BIVM-ERCC5R4GMW8 1640 aa17.71■□□□□ 0.43
TGFB3-207ENST00000557493 TOP2BQ02880 1626 aa17.69■□□□□ 0.42
TGFB3-207ENST00000557493 CUX1P39880 1505 aa17.64■□□□□ 0.41
TGFB3-207ENST00000557493 ERCC6L2Q5T890 1561 aa17.56■□□□□ 0.4
TGFB3-207ENST00000557493 PBRM1Q86U86 1689 aa17.55■□□□□ 0.4
TGFB3-207ENST00000557493 GRIN2AQ12879 1464 aa17.52■□□□□ 0.4
TGFB3-207ENST00000557493 EEA1Q15075 1411 aa17.51■□□□□ 0.39
TGFB3-207ENST00000557493 CEP170Q5SW79 1584 aa17.51■□□□□ 0.39
TGFB3-207ENST00000557493 ABCA10Q8WWZ4 1543 aa17.5■□□□□ 0.39
TGFB3-207ENST00000557493 ILDR1Q86SU0 546 aaPredicted RBP17.49■□□□□ 0.39
TGFB3-207ENST00000557493 NUP160Q12769 1436 aa17.48■□□□□ 0.39
TGFB3-207ENST00000557493 ABCA5Q8WWZ7 1642 aa17.48■□□□□ 0.39
TGFB3-207ENST00000557493 KIF13AQ9H1H9 1805 aa17.44■□□□□ 0.38
TGFB3-207ENST00000557493 FAM69CQ0P6D2 419 aa17.42■□□□□ 0.38
TGFB3-207ENST00000557493 ADAMTS12P58397 1594 aa17.41■□□□□ 0.38
TGFB3-207ENST00000557493 SHROOM2Q13796 1616 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms