RNA–Protein interactions for RNA: ENST00000557331.1

RDH11-210, Transcript of retinol dehydrogenase 11, humanhuman

TSL 4

Gene RDH11, Length 553 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RDH11-210ENST00000557331 NISCHQ9Y2I1 1504 aa25.75■■□□□ 1.71
RDH11-210ENST00000557331 ABCC9O60706 1549 aa23.36■■□□□ 1.33
RDH11-210ENST00000557331 CCDC180Q9P1Z9 1646 aa23.22■■□□□ 1.31
RDH11-210ENST00000557331 RB1CC1Q8TDY2 1594 aa22.25■■□□□ 1.15
RDH11-210ENST00000557331 DNAJC5BQ9UF47 199 aa22.11■■□□□ 1.13
RDH11-210ENST00000557331 NACADO15069 1562 aa22.08■■□□□ 1.12
RDH11-210ENST00000557331 DCAF8L2P0C7V8 631 aa21.85■■□□□ 1.09
RDH11-210ENST00000557331 MYO15BQ96JP2 1530 aa21.75■■□□□ 1.07
RDH11-210ENST00000557331 PABPN1Q86U42 306 aaKnown RBP eCLIP21.73■■□□□ 1.07
RDH11-210ENST00000557331 UNC13AQ9UPW8 1703 aa21.55■■□□□ 1.04
RDH11-210ENST00000557331 BICRAQ9NZM4 1560 aa21.48■■□□□ 1.03
RDH11-210ENST00000557331 SHROOM4Q9ULL8 1493 aa21.41■■□□□ 1.02
RDH11-210ENST00000557331 DCAF1Q9Y4B6 1507 aa21.35■■□□□ 1.01
RDH11-210ENST00000557331 ZCCHC6Q5VYS8 1495 aaKnown RBP21.27■■□□□ 1
RDH11-210ENST00000557331 CECR2Q9BXF3 1484 aa21.14■□□□□ 0.98
RDH11-210ENST00000557331 CC2D2AQ9P2K1 1620 aa21.11■□□□□ 0.97
RDH11-210ENST00000557331 EIF4G1Q04637 1599 aaKnown RBP21.03■□□□□ 0.96
RDH11-210ENST00000557331 SCRIBQ14160 1630 aa21.01■□□□□ 0.95
RDH11-210ENST00000557331 DNAJC5Q9H3Z4 198 aa20.65■□□□□ 0.9
RDH11-210ENST00000557331 NCAPD3P42695 1498 aa20.39■□□□□ 0.85
RDH11-210ENST00000557331 CUX2O14529 1486 aa20.38■□□□□ 0.85
RDH11-210ENST00000557331 ERCC6Q03468 1493 aa20.29■□□□□ 0.84
RDH11-210ENST00000557331 ATAD2BQ9ULI0 1458 aa20.22■□□□□ 0.83
RDH11-210ENST00000557331 SMARCA2P51531 1590 aa20.21■□□□□ 0.83
RDH11-210ENST00000557331 HMGXB3Q12766 1538 aa20.17■□□□□ 0.82
RDH11-210ENST00000557331 SMARCA4P51532 1647 aa20.09■□□□□ 0.81
RDH11-210ENST00000557331 BAZ1AQ9NRL2 1556 aaPredicted RBP20.04■□□□□ 0.8
RDH11-210ENST00000557331 BAZ1BQ9UIG0 1483 aaKnown RBP20.03■□□□□ 0.8
RDH11-210ENST00000557331 PEG3Q9GZU2 1588 aa19.98■□□□□ 0.79
RDH11-210ENST00000557331 NESP48681 1621 aa19.95■□□□□ 0.78
RDH11-210ENST00000557331 LAMC3Q9Y6N6 1575 aa19.93■□□□□ 0.78
RDH11-210ENST00000557331 PDS5BQ9NTI5 1447 aa19.9■□□□□ 0.78
RDH11-210ENST00000557331 THOC2Q8NI27 1593 aaKnown RBP19.83■□□□□ 0.77
RDH11-210ENST00000557331 MROH2BQ7Z745 1585 aa19.75■□□□□ 0.75
RDH11-210ENST00000557331 CADPSQ9ULU8 1353 aa19.75■□□□□ 0.75
RDH11-210ENST00000557331 KIF21AQ7Z4S6 1674 aa19.68■□□□□ 0.74
RDH11-210ENST00000557331 MRC2Q9UBG0 1479 aa19.65■□□□□ 0.74
RDH11-210ENST00000557331 WDR62O43379 1518 aa19.59■□□□□ 0.73
RDH11-210ENST00000557331 TRIM41Q8WV44 630 aa19.54■□□□□ 0.72
RDH11-210ENST00000557331 CEP164Q9UPV0 1460 aa19.53■□□□□ 0.72
RDH11-210ENST00000557331 WIZO95785 1651 aa19.47■□□□□ 0.71
RDH11-210ENST00000557331 FANCD2Q9BXW9 1451 aa19.47■□□□□ 0.71
RDH11-210ENST00000557331 OSCARQ8IYS5 282 aa19.46■□□□□ 0.71
RDH11-210ENST00000557331 CFTRP13569 1480 aa19.45■□□□□ 0.7
RDH11-210ENST00000557331 RSF1Q96T23 1441 aaPredicted RBP19.33■□□□□ 0.68
RDH11-210ENST00000557331 TOP2AP11388 1531 aaKnown RBP19.3■□□□□ 0.68
RDH11-210ENST00000557331 URB2Q14146 1524 aaKnown RBP19.25■□□□□ 0.67
RDH11-210ENST00000557331 IFT140Q96RY7 1462 aa19.18■□□□□ 0.66
RDH11-210ENST00000557331 ABCC8Q09428 1581 aa19.16■□□□□ 0.66
RDH11-210ENST00000557331 PRDM2Q13029 1718 aa19.14■□□□□ 0.66
RDH11-210ENST00000557331 CCDC88BA6NC98 1476 aa19.08■□□□□ 0.64
RDH11-210ENST00000557331 TOPBP1Q92547 1522 aa19.05■□□□□ 0.64
RDH11-210ENST00000557331 ZNF608Q9ULD9 1512 aaPredicted RBP19.04■□□□□ 0.64
RDH11-210ENST00000557331 RIMBP3CA6NJZ7 1639 aa19.03■□□□□ 0.64
RDH11-210ENST00000557331 RIMBP3BA6NNM3 1639 aa19.03■□□□□ 0.64
RDH11-210ENST00000557331 RIMBP3Q9UFD9 1639 aa19.03■□□□□ 0.64
RDH11-210ENST00000557331 ARHGEF11O15085 1522 aa19■□□□□ 0.63
RDH11-210ENST00000557331 DNMBPQ6XZF7 1577 aa18.97■□□□□ 0.63
RDH11-210ENST00000557331 CYB5RLQ6IPT4 315 aa18.94■□□□□ 0.62
RDH11-210ENST00000557331 EIF4G3O43432 1585 aaKnown RBP18.93■□□□□ 0.62
RDH11-210ENST00000557331 AQRO60306 1485 aaKnown RBP eCLIP18.88■□□□□ 0.618e-7■■■■■ 28.7
RDH11-210ENST00000557331 FBLN2P98095 1184 aa18.87■□□□□ 0.61
RDH11-210ENST00000557331 TARBP1Q13395 1621 aaKnown RBP18.87■□□□□ 0.61
RDH11-210ENST00000557331 POLA1P09884 1462 aaPredicted RBP18.84■□□□□ 0.61
RDH11-210ENST00000557331 TRHP20396 242 aaPredicted RBP18.82■□□□□ 0.6
RDH11-210ENST00000557331 SOGA1O94964 1423 aa18.81■□□□□ 0.6
RDH11-210ENST00000557331 WDR97A6NE52 1622 aa18.81■□□□□ 0.6
RDH11-210ENST00000557331 CHD1O14646 1710 aa18.8■□□□□ 0.6
RDH11-210ENST00000557331 ARAP1Q96P48 1450 aa18.77■□□□□ 0.59
RDH11-210ENST00000557331 CHMP7Q8WUX9 453 aaPredicted RBP18.76■□□□□ 0.59
RDH11-210ENST00000557331 TDRD9Q8NDG6 1382 aaKnown RBP18.74■□□□□ 0.59
RDH11-210ENST00000557331 MAGI1Q96QZ7 1491 aaPredicted RBP18.72■□□□□ 0.59
RDH11-210ENST00000557331 RAD54L2Q9Y4B4 1467 aa18.72■□□□□ 0.59
RDH11-210ENST00000557331 SYNJ1O43426 1573 aa18.68■□□□□ 0.58
RDH11-210ENST00000557331 GRIN2BQ13224 1484 aa18.68■□□□□ 0.58
RDH11-210ENST00000557331 SNAPC4Q5SXM2 1469 aa18.67■□□□□ 0.58
RDH11-210ENST00000557331 FGD5Q6ZNL6 1462 aa18.67■□□□□ 0.58
RDH11-210ENST00000557331 CLASP1Q7Z460 1538 aa18.64■□□□□ 0.58
RDH11-210ENST00000557331 SYNJ2O15056 1496 aa18.64■□□□□ 0.57
RDH11-210ENST00000557331 CUX1P39880 1505 aa18.59■□□□□ 0.57
RDH11-210ENST00000557331 GAPVD1Q14C86 1478 aa18.57■□□□□ 0.56
RDH11-210ENST00000557331 ABCA10Q8WWZ4 1543 aa18.51■□□□□ 0.55
RDH11-210ENST00000557331 AEBP2Q6ZN18 517 aaPredicted RBP18.51■□□□□ 0.55
RDH11-210ENST00000557331 PBRM1Q86U86 1689 aa18.45■□□□□ 0.54
RDH11-210ENST00000557331 WRNQ14191 1432 aaPredicted RBP eCLIP18.44■□□□□ 0.54
RDH11-210ENST00000557331 ABCA5Q8WWZ7 1642 aa18.42■□□□□ 0.54
RDH11-210ENST00000557331 GRIN2AQ12879 1464 aa18.39■□□□□ 0.54
RDH11-210ENST00000557331 NUP160Q12769 1436 aa18.37■□□□□ 0.53
RDH11-210ENST00000557331 FHAD1B1AJZ9 1412 aa18.35■□□□□ 0.53
RDH11-210ENST00000557331 ADAMTS12P58397 1594 aa18.3■□□□□ 0.52
RDH11-210ENST00000557331 CEP170Q5SW79 1584 aa18.3■□□□□ 0.52
RDH11-210ENST00000557331 ERICH3Q5RHP9 1530 aa18.29■□□□□ 0.52
RDH11-210ENST00000557331 SUPT5HO00267 1087 aaKnown RBP18.28■□□□□ 0.52
RDH11-210ENST00000557331 TOP2BQ02880 1626 aa18.27■□□□□ 0.52
RDH11-210ENST00000557331 SHROOM2Q13796 1616 aa18.26■□□□□ 0.51
RDH11-210ENST00000557331 BIVM-ERCC5R4GMW8 1640 aa18.24■□□□□ 0.51
RDH11-210ENST00000557331 JPH4Q96JJ6 628 aa18.24■□□□□ 0.51
RDH11-210ENST00000557331 ERCC6L2Q5T890 1561 aa18.22■□□□□ 0.51
RDH11-210ENST00000557331 NPM1P06748 294 aaKnown RBP eCLIP18.22■□□□□ 0.51
RDH11-210ENST00000557331 PRG4Q92954 1404 aaPredicted RBP18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms