RNA–Protein interactions for RNA: ENST00000557084.1

SYNE2-226, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 689 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-226ENST00000557084 NISCHQ9Y2I1 1504 aa28.98■■■□□ 2.23
SYNE2-226ENST00000557084 CCDC180Q9P1Z9 1646 aa25.77■■□□□ 1.72
SYNE2-226ENST00000557084 ABCC9O60706 1549 aa25.52■■□□□ 1.68
SYNE2-226ENST00000557084 AEBP2Q6ZN18 517 aaPredicted RBP25.48■■□□□ 1.67
SYNE2-226ENST00000557084 CHIC1Q5VXU3 224 aa24.69■■□□□ 1.54
SYNE2-226ENST00000557084 DCAF8L2P0C7V8 631 aa24.51■■□□□ 1.51
SYNE2-226ENST00000557084 RB1CC1Q8TDY2 1594 aa24.43■■□□□ 1.5
SYNE2-226ENST00000557084 NACADO15069 1562 aa24.34■■□□□ 1.49
SYNE2-226ENST00000557084 MYO15BQ96JP2 1530 aa24.1■■□□□ 1.45
SYNE2-226ENST00000557084 ZCCHC6Q5VYS8 1495 aaKnown RBP24.07■■□□□ 1.44
SYNE2-226ENST00000557084 DCAF1Q9Y4B6 1507 aa23.92■■□□□ 1.42
SYNE2-226ENST00000557084 PABPN1Q86U42 306 aaKnown RBP eCLIP23.88■■□□□ 1.41
SYNE2-226ENST00000557084 UNC13AQ9UPW8 1703 aa23.73■■□□□ 1.39
SYNE2-226ENST00000557084 BICRAQ9NZM4 1560 aa23.61■■□□□ 1.37
SYNE2-226ENST00000557084 SCRIBQ14160 1630 aa23.59■■□□□ 1.37
SYNE2-226ENST00000557084 DNAJC5BQ9UF47 199 aa23.57■■□□□ 1.36
SYNE2-226ENST00000557084 SHROOM4Q9ULL8 1493 aa23.4■■□□□ 1.34
SYNE2-226ENST00000557084 EIF4G1Q04637 1599 aaKnown RBP23.06■■□□□ 1.28
SYNE2-226ENST00000557084 CC2D2AQ9P2K1 1620 aa23.01■■□□□ 1.27
SYNE2-226ENST00000557084 CECR2Q9BXF3 1484 aa22.96■■□□□ 1.27
SYNE2-226ENST00000557084 SMARCA4P51532 1647 aa22.49■■□□□ 1.19
SYNE2-226ENST00000557084 BAZ1AQ9NRL2 1556 aaPredicted RBP22.49■■□□□ 1.19
SYNE2-226ENST00000557084 NCAPD3P42695 1498 aa22.47■■□□□ 1.19
SYNE2-226ENST00000557084 ATAD2BQ9ULI0 1458 aa22.46■■□□□ 1.19
SYNE2-226ENST00000557084 SMARCA2P51531 1590 aa22.44■■□□□ 1.18
SYNE2-226ENST00000557084 MROH2BQ7Z745 1585 aa22.32■■□□□ 1.16
SYNE2-226ENST00000557084 HMGXB3Q12766 1538 aa22.31■■□□□ 1.16
SYNE2-226ENST00000557084 BAZ1BQ9UIG0 1483 aaKnown RBP22.31■■□□□ 1.16
SYNE2-226ENST00000557084 PEG3Q9GZU2 1588 aa22.25■■□□□ 1.15
SYNE2-226ENST00000557084 ERCC6Q03468 1493 aa22.07■■□□□ 1.12
SYNE2-226ENST00000557084 WIZO95785 1651 aa22.05■■□□□ 1.12
SYNE2-226ENST00000557084 RSF1Q96T23 1441 aaPredicted RBP22.03■■□□□ 1.12
SYNE2-226ENST00000557084 NESP48681 1621 aa21.99■■□□□ 1.11
SYNE2-226ENST00000557084 LAMC3Q9Y6N6 1575 aa21.9■■□□□ 1.1
SYNE2-226ENST00000557084 CADPSQ9ULU8 1353 aa21.86■■□□□ 1.09
SYNE2-226ENST00000557084 PDS5BQ9NTI5 1447 aa21.84■■□□□ 1.09
SYNE2-226ENST00000557084 TOP2AP11388 1531 aaKnown RBP21.83■■□□□ 1.09
SYNE2-226ENST00000557084 CUX2O14529 1486 aa21.82■■□□□ 1.08
SYNE2-226ENST00000557084 PHF23Q9BUL5 403 aaPredicted RBP21.75■■□□□ 1.07
SYNE2-226ENST00000557084 KIF21AQ7Z4S6 1674 aa21.66■■□□□ 1.06
SYNE2-226ENST00000557084 CFTRP13569 1480 aa21.64■■□□□ 1.05
SYNE2-226ENST00000557084 THOC2Q8NI27 1593 aaKnown RBP21.62■■□□□ 1.05
SYNE2-226ENST00000557084 CCDC88BA6NC98 1476 aa21.6■■□□□ 1.05
SYNE2-226ENST00000557084 FANCD2Q9BXW9 1451 aa21.59■■□□□ 1.05
SYNE2-226ENST00000557084 CEP164Q9UPV0 1460 aa21.58■■□□□ 1.05
SYNE2-226ENST00000557084 SENP3Q9H4L4 574 aaPredicted RBP21.58■■□□□ 1.05
SYNE2-226ENST00000557084 MRC2Q9UBG0 1479 aa21.58■■□□□ 1.04
SYNE2-226ENST00000557084 SUPT5HO00267 1087 aaKnown RBP21.49■■□□□ 1.03
SYNE2-226ENST00000557084 WDR62O43379 1518 aa21.46■■□□□ 1.03
SYNE2-226ENST00000557084 DNAJC5Q9H3Z4 198 aa21.42■■□□□ 1.02
SYNE2-226ENST00000557084 PRDM2Q13029 1718 aa21.35■■□□□ 1.01
SYNE2-226ENST00000557084 URB2Q14146 1524 aaKnown RBP21.34■■□□□ 1.01
SYNE2-226ENST00000557084 ABCC8Q09428 1581 aa21.23■□□□□ 0.99
SYNE2-226ENST00000557084 TOPBP1Q92547 1522 aa21.19■□□□□ 0.98
SYNE2-226ENST00000557084 DNMBPQ6XZF7 1577 aa21.14■□□□□ 0.98
SYNE2-226ENST00000557084 IFT140Q96RY7 1462 aa21.14■□□□□ 0.98
SYNE2-226ENST00000557084 ZNF608Q9ULD9 1512 aaPredicted RBP21.04■□□□□ 0.96
SYNE2-226ENST00000557084 POLA1P09884 1462 aaPredicted RBP21.01■□□□□ 0.95
SYNE2-226ENST00000557084 OSCARQ8IYS5 282 aa20.99■□□□□ 0.95
SYNE2-226ENST00000557084 SOGA1O94964 1423 aa20.98■□□□□ 0.95
SYNE2-226ENST00000557084 CUX1P39880 1505 aa20.95■□□□□ 0.94
SYNE2-226ENST00000557084 FGD5Q6ZNL6 1462 aa20.94■□□□□ 0.94
SYNE2-226ENST00000557084 RAD54L2Q9Y4B4 1467 aa20.94■□□□□ 0.94
SYNE2-226ENST00000557084 AQRO60306 1485 aaKnown RBP eCLIP20.94■□□□□ 0.94
SYNE2-226ENST00000557084 TARBP1Q13395 1621 aaKnown RBP20.93■□□□□ 0.94
SYNE2-226ENST00000557084 EIF4G3O43432 1585 aaKnown RBP20.91■□□□□ 0.94
SYNE2-226ENST00000557084 TDRD9Q8NDG6 1382 aaKnown RBP20.89■□□□□ 0.93
SYNE2-226ENST00000557084 FBLN2P98095 1184 aa20.85■□□□□ 0.93
SYNE2-226ENST00000557084 WRNQ14191 1432 aaPredicted RBP eCLIP20.81■□□□□ 0.92
SYNE2-226ENST00000557084 WDR97A6NE52 1622 aa20.77■□□□□ 0.92
SYNE2-226ENST00000557084 GRIN2BQ13224 1484 aa20.74■□□□□ 0.91
SYNE2-226ENST00000557084 CHMP7Q8WUX9 453 aaPredicted RBP20.73■□□□□ 0.91
SYNE2-226ENST00000557084 TRIM41Q8WV44 630 aa20.73■□□□□ 0.91
SYNE2-226ENST00000557084 SNAPC4Q5SXM2 1469 aa20.72■□□□□ 0.91
SYNE2-226ENST00000557084 ABCA10Q8WWZ4 1543 aa20.72■□□□□ 0.91
SYNE2-226ENST00000557084 TOP2BQ02880 1626 aa20.71■□□□□ 0.91
SYNE2-226ENST00000557084 GAPVD1Q14C86 1478 aa20.71■□□□□ 0.91
SYNE2-226ENST00000557084 SYNJ1O43426 1573 aa20.69■□□□□ 0.9
SYNE2-226ENST00000557084 MAGI1Q96QZ7 1491 aaPredicted RBP20.68■□□□□ 0.9
SYNE2-226ENST00000557084 BIVM-ERCC5R4GMW8 1640 aa20.67■□□□□ 0.9
SYNE2-226ENST00000557084 CHD1O14646 1710 aa20.66■□□□□ 0.9
SYNE2-226ENST00000557084 SYNJ2O15056 1496 aa20.61■□□□□ 0.89
SYNE2-226ENST00000557084 ABCA5Q8WWZ7 1642 aa20.6■□□□□ 0.89
SYNE2-226ENST00000557084 PBRM1Q86U86 1689 aa20.58■□□□□ 0.89
SYNE2-226ENST00000557084 ARHGEF11O15085 1522 aa20.54■□□□□ 0.88
SYNE2-226ENST00000557084 RIMBP3CA6NJZ7 1639 aa20.53■□□□□ 0.88
SYNE2-226ENST00000557084 RIMBP3BA6NNM3 1639 aa20.53■□□□□ 0.88
SYNE2-226ENST00000557084 RIMBP3Q9UFD9 1639 aa20.53■□□□□ 0.88
SYNE2-226ENST00000557084 CYB5RLQ6IPT4 315 aa20.48■□□□□ 0.87
SYNE2-226ENST00000557084 FHAD1B1AJZ9 1412 aa20.47■□□□□ 0.87
SYNE2-226ENST00000557084 ERICH3Q5RHP9 1530 aa20.47■□□□□ 0.87
SYNE2-226ENST00000557084 GRIN2AQ12879 1464 aa20.44■□□□□ 0.86
SYNE2-226ENST00000557084 ADAMTS12P58397 1594 aa20.44■□□□□ 0.86
SYNE2-226ENST00000557084 CLASP1Q7Z460 1538 aa20.43■□□□□ 0.86
SYNE2-226ENST00000557084 KIF27Q86VH2 1401 aa20.43■□□□□ 0.86
SYNE2-226ENST00000557084 ARAP1Q96P48 1450 aa20.35■□□□□ 0.85
SYNE2-226ENST00000557084 NUP160Q12769 1436 aa20.34■□□□□ 0.85
SYNE2-226ENST00000557084 IGF1RP08069 1367 aa20.34■□□□□ 0.85
SYNE2-226ENST00000557084 CEP170Q5SW79 1584 aa20.3■□□□□ 0.84
SYNE2-226ENST00000557084 CARMIL1Q5VZK9 1371 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 126.7 ms