RNA–Protein interactions for RNA: ENST00000556527.1

CRX-203, Transcript of cone-rod homeobox, humanhuman

TSL 1 (best)

Gene CRX, Length 164 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRX-203ENST00000556527 NISCHQ9Y2I1 1504 aa24.45■■□□□ 1.51
CRX-203ENST00000556527 ABCC9O60706 1549 aa22.16■■□□□ 1.14
CRX-203ENST00000556527 CCDC180Q9P1Z9 1646 aa21.99■■□□□ 1.11
CRX-203ENST00000556527 RB1CC1Q8TDY2 1594 aa21.04■□□□□ 0.96
CRX-203ENST00000556527 DCAF8L2P0C7V8 631 aa20.86■□□□□ 0.93
CRX-203ENST00000556527 NACADO15069 1562 aa20.85■□□□□ 0.93
CRX-203ENST00000556527 DNAJC5BQ9UF47 199 aa20.79■□□□□ 0.92
CRX-203ENST00000556527 PABPN1Q86U42 306 aaKnown RBP eCLIP20.63■□□□□ 0.89
CRX-203ENST00000556527 MYO15BQ96JP2 1530 aa20.48■□□□□ 0.87
CRX-203ENST00000556527 UNC13AQ9UPW8 1703 aa20.44■□□□□ 0.86
CRX-203ENST00000556527 BICRAQ9NZM4 1560 aa20.33■□□□□ 0.84
CRX-203ENST00000556527 ZCCHC6Q5VYS8 1495 aaKnown RBP20.24■□□□□ 0.83
CRX-203ENST00000556527 DCAF1Q9Y4B6 1507 aa20.18■□□□□ 0.82
CRX-203ENST00000556527 SHROOM4Q9ULL8 1493 aa20.13■□□□□ 0.81
CRX-203ENST00000556527 SCRIBQ14160 1630 aa20.07■□□□□ 0.8
CRX-203ENST00000556527 CECR2Q9BXF3 1484 aa19.98■□□□□ 0.79
CRX-203ENST00000556527 CC2D2AQ9P2K1 1620 aa19.97■□□□□ 0.79
CRX-203ENST00000556527 EIF4G1Q04637 1599 aaKnown RBP19.9■□□□□ 0.78
CRX-203ENST00000556527 DNAJC5Q9H3Z4 198 aa19.25■□□□□ 0.67
CRX-203ENST00000556527 NCAPD3P42695 1498 aa19.22■□□□□ 0.67
CRX-203ENST00000556527 ERCC6Q03468 1493 aa19.22■□□□□ 0.67
CRX-203ENST00000556527 ATAD2BQ9ULI0 1458 aa19.16■□□□□ 0.66
CRX-203ENST00000556527 CUX2O14529 1486 aa19.14■□□□□ 0.65
CRX-203ENST00000556527 SMARCA2P51531 1590 aa19.14■□□□□ 0.65
CRX-203ENST00000556527 SMARCA4P51532 1647 aa19.11■□□□□ 0.65
CRX-203ENST00000556527 HMGXB3Q12766 1538 aa19.08■□□□□ 0.64
CRX-203ENST00000556527 BAZ1AQ9NRL2 1556 aaPredicted RBP19.03■□□□□ 0.64
CRX-203ENST00000556527 BAZ1BQ9UIG0 1483 aaKnown RBP19.03■□□□□ 0.64
CRX-203ENST00000556527 NESP48681 1621 aa18.96■□□□□ 0.63
CRX-203ENST00000556527 PEG3Q9GZU2 1588 aa18.89■□□□□ 0.61
CRX-203ENST00000556527 LAMC3Q9Y6N6 1575 aa18.84■□□□□ 0.61
CRX-203ENST00000556527 MROH2BQ7Z745 1585 aa18.83■□□□□ 0.6
CRX-203ENST00000556527 PDS5BQ9NTI5 1447 aa18.79■□□□□ 0.6
CRX-203ENST00000556527 THOC2Q8NI27 1593 aaKnown RBP18.76■□□□□ 0.59
CRX-203ENST00000556527 KIF21AQ7Z4S6 1674 aa18.69■□□□□ 0.58
CRX-203ENST00000556527 CADPSQ9ULU8 1353 aa18.68■□□□□ 0.58
CRX-203ENST00000556527 WIZO95785 1651 aa18.6■□□□□ 0.57
CRX-203ENST00000556527 MRC2Q9UBG0 1479 aa18.59■□□□□ 0.57
CRX-203ENST00000556527 CEP164Q9UPV0 1460 aa18.52■□□□□ 0.56
CRX-203ENST00000556527 WDR62O43379 1518 aa18.51■□□□□ 0.55
CRX-203ENST00000556527 FANCD2Q9BXW9 1451 aa18.46■□□□□ 0.55
CRX-203ENST00000556527 TRIM41Q8WV44 630 aa18.45■□□□□ 0.54
CRX-203ENST00000556527 RSF1Q96T23 1441 aaPredicted RBP18.41■□□□□ 0.54
CRX-203ENST00000556527 CFTRP13569 1480 aa18.41■□□□□ 0.54
CRX-203ENST00000556527 TOP2AP11388 1531 aaKnown RBP18.39■□□□□ 0.53
CRX-203ENST00000556527 OSCARQ8IYS5 282 aa18.31■□□□□ 0.52
CRX-203ENST00000556527 URB2Q14146 1524 aaKnown RBP18.28■□□□□ 0.52
CRX-203ENST00000556527 CCDC88BA6NC98 1476 aa18.18■□□□□ 0.5
CRX-203ENST00000556527 PRDM2Q13029 1718 aa18.18■□□□□ 0.5
CRX-203ENST00000556527 IFT140Q96RY7 1462 aa18.14■□□□□ 0.49
CRX-203ENST00000556527 ABCC8Q09428 1581 aa18.08■□□□□ 0.49
CRX-203ENST00000556527 TOPBP1Q92547 1522 aa18.08■□□□□ 0.48
CRX-203ENST00000556527 ZNF608Q9ULD9 1512 aaPredicted RBP18.08■□□□□ 0.48
CRX-203ENST00000556527 DNMBPQ6XZF7 1577 aa18.01■□□□□ 0.47
CRX-203ENST00000556527 RIMBP3CA6NJZ7 1639 aa17.99■□□□□ 0.47
CRX-203ENST00000556527 RIMBP3BA6NNM3 1639 aa17.99■□□□□ 0.47
CRX-203ENST00000556527 RIMBP3Q9UFD9 1639 aa17.99■□□□□ 0.47
CRX-203ENST00000556527 EIF4G3O43432 1585 aaKnown RBP17.99■□□□□ 0.47
CRX-203ENST00000556527 FBLN2P98095 1184 aa17.95■□□□□ 0.46
CRX-203ENST00000556527 ARHGEF11O15085 1522 aa17.94■□□□□ 0.46
CRX-203ENST00000556527 AQRO60306 1485 aaKnown RBP eCLIP17.93■□□□□ 0.46
CRX-203ENST00000556527 TARBP1Q13395 1621 aaKnown RBP17.89■□□□□ 0.45
CRX-203ENST00000556527 POLA1P09884 1462 aaPredicted RBP17.88■□□□□ 0.45
CRX-203ENST00000556527 CYB5RLQ6IPT4 315 aa17.88■□□□□ 0.45
CRX-203ENST00000556527 CHD1O14646 1710 aa17.85■□□□□ 0.45
CRX-203ENST00000556527 SOGA1O94964 1423 aa17.85■□□□□ 0.45
CRX-203ENST00000556527 RAD54L2Q9Y4B4 1467 aa17.82■□□□□ 0.44
CRX-203ENST00000556527 TDRD9Q8NDG6 1382 aaKnown RBP17.82■□□□□ 0.44
CRX-203ENST00000556527 TRHP20396 242 aaPredicted RBP17.79■□□□□ 0.44
CRX-203ENST00000556527 CHMP7Q8WUX9 453 aaPredicted RBP17.78■□□□□ 0.44
CRX-203ENST00000556527 FGD5Q6ZNL6 1462 aa17.77■□□□□ 0.44
CRX-203ENST00000556527 SNAPC4Q5SXM2 1469 aa17.75■□□□□ 0.43
CRX-203ENST00000556527 WDR97A6NE52 1622 aa17.75■□□□□ 0.43
CRX-203ENST00000556527 ARAP1Q96P48 1450 aa17.74■□□□□ 0.43
CRX-203ENST00000556527 MAGI1Q96QZ7 1491 aaPredicted RBP17.71■□□□□ 0.43
CRX-203ENST00000556527 CUX1P39880 1505 aa17.71■□□□□ 0.43
CRX-203ENST00000556527 GRIN2BQ13224 1484 aa17.7■□□□□ 0.42
CRX-203ENST00000556527 SYNJ1O43426 1573 aa17.69■□□□□ 0.42
CRX-203ENST00000556527 SYNJ2O15056 1496 aa17.65■□□□□ 0.42
CRX-203ENST00000556527 SUPT5HO00267 1087 aaKnown RBP17.64■□□□□ 0.41
CRX-203ENST00000556527 CLASP1Q7Z460 1538 aa17.63■□□□□ 0.41
CRX-203ENST00000556527 GAPVD1Q14C86 1478 aa17.63■□□□□ 0.41
CRX-203ENST00000556527 PBRM1Q86U86 1689 aa17.57■□□□□ 0.4
CRX-203ENST00000556527 ABCA10Q8WWZ4 1543 aa17.56■□□□□ 0.4
CRX-203ENST00000556527 WRNQ14191 1432 aaPredicted RBP eCLIP17.53■□□□□ 0.4
CRX-203ENST00000556527 ABCA5Q8WWZ7 1642 aa17.51■□□□□ 0.39
CRX-203ENST00000556527 GRIN2AQ12879 1464 aa17.46■□□□□ 0.39
CRX-203ENST00000556527 TOP2BQ02880 1626 aa17.41■□□□□ 0.38
CRX-203ENST00000556527 ADAMTS12P58397 1594 aa17.4■□□□□ 0.38
CRX-203ENST00000556527 FHAD1B1AJZ9 1412 aa17.39■□□□□ 0.38
CRX-203ENST00000556527 AEBP2Q6ZN18 517 aaPredicted RBP17.39■□□□□ 0.37
CRX-203ENST00000556527 BIVM-ERCC5R4GMW8 1640 aa17.39■□□□□ 0.37
CRX-203ENST00000556527 NUP160Q12769 1436 aa17.37■□□□□ 0.37
CRX-203ENST00000556527 CEP170Q5SW79 1584 aa17.36■□□□□ 0.37
CRX-203ENST00000556527 ERICH3Q5RHP9 1530 aa17.35■□□□□ 0.37
CRX-203ENST00000556527 ERCC6L2Q5T890 1561 aa17.34■□□□□ 0.37
CRX-203ENST00000556527 SHROOM2Q13796 1616 aa17.28■□□□□ 0.36
CRX-203ENST00000556527 PRG4Q92954 1404 aaPredicted RBP17.27■□□□□ 0.35
CRX-203ENST00000556527 JPH4Q96JJ6 628 aa17.25■□□□□ 0.35
CRX-203ENST00000556527 NPM1P06748 294 aaKnown RBP eCLIP17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms