RNA–Protein interactions for RNA: ENST00000556303.1

SNX6-207, Transcript of sorting nexin 6, humanhuman

TSL 2

Gene SNX6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-207ENST00000556303 NISCHQ9Y2I1 1504 aa31.12■■■□□ 2.57
SNX6-207ENST00000556303 CCDC180Q9P1Z9 1646 aa27.8■■■□□ 2.04
SNX6-207ENST00000556303 ABCC9O60706 1549 aa27.46■■□□□ 1.99
SNX6-207ENST00000556303 RB1CC1Q8TDY2 1594 aa26.35■■□□□ 1.81
SNX6-207ENST00000556303 NACADO15069 1562 aa26.27■■□□□ 1.8
SNX6-207ENST00000556303 DCAF8L2P0C7V8 631 aa26.1■■□□□ 1.77
SNX6-207ENST00000556303 MYO15BQ96JP2 1530 aa26.07■■□□□ 1.76
SNX6-207ENST00000556303 ZCCHC6Q5VYS8 1495 aaKnown RBP25.84■■□□□ 1.73
SNX6-207ENST00000556303 DCAF1Q9Y4B6 1507 aa25.81■■□□□ 1.72
SNX6-207ENST00000556303 UNC13AQ9UPW8 1703 aa25.63■■□□□ 1.69
SNX6-207ENST00000556303 PABPN1Q86U42 306 aaKnown RBP eCLIP25.62■■□□□ 1.69
SNX6-207ENST00000556303 DNAJC5BQ9UF47 199 aa25.54■■□□□ 1.68
SNX6-207ENST00000556303 BICRAQ9NZM4 1560 aa25.5■■□□□ 1.67
SNX6-207ENST00000556303 SHROOM4Q9ULL8 1493 aa25.36■■□□□ 1.65
SNX6-207ENST00000556303 SCRIBQ14160 1630 aa25.24■■□□□ 1.63
SNX6-207ENST00000556303 EIF4G1Q04637 1599 aaKnown RBP24.88■■□□□ 1.57
SNX6-207ENST00000556303 CC2D2AQ9P2K1 1620 aa24.84■■□□□ 1.57
SNX6-207ENST00000556303 CECR2Q9BXF3 1484 aa24.77■■□□□ 1.56
SNX6-207ENST00000556303 NCAPD3P42695 1498 aa24.26■■□□□ 1.47
SNX6-207ENST00000556303 ATAD2BQ9ULI0 1458 aa24.18■■□□□ 1.46
SNX6-207ENST00000556303 SMARCA4P51532 1647 aa24.17■■□□□ 1.46
SNX6-207ENST00000556303 BAZ1AQ9NRL2 1556 aaPredicted RBP24.16■■□□□ 1.46
SNX6-207ENST00000556303 SMARCA2P51531 1590 aa24.15■■□□□ 1.46
SNX6-207ENST00000556303 HMGXB3Q12766 1538 aa24.07■■□□□ 1.44
SNX6-207ENST00000556303 PEG3Q9GZU2 1588 aa24.01■■□□□ 1.43
SNX6-207ENST00000556303 BAZ1BQ9UIG0 1483 aaKnown RBP23.94■■□□□ 1.42
SNX6-207ENST00000556303 MROH2BQ7Z745 1585 aa23.92■■□□□ 1.42
SNX6-207ENST00000556303 ERCC6Q03468 1493 aa23.75■■□□□ 1.39
SNX6-207ENST00000556303 CUX2O14529 1486 aa23.68■■□□□ 1.38
SNX6-207ENST00000556303 NESP48681 1621 aa23.65■■□□□ 1.38
SNX6-207ENST00000556303 LAMC3Q9Y6N6 1575 aa23.64■■□□□ 1.37
SNX6-207ENST00000556303 WIZO95785 1651 aa23.61■■□□□ 1.37
SNX6-207ENST00000556303 RSF1Q96T23 1441 aaPredicted RBP23.58■■□□□ 1.36
SNX6-207ENST00000556303 PDS5BQ9NTI5 1447 aa23.54■■□□□ 1.36
SNX6-207ENST00000556303 CADPSQ9ULU8 1353 aa23.53■■□□□ 1.36
SNX6-207ENST00000556303 TOP2AP11388 1531 aaKnown RBP23.4■■□□□ 1.34
SNX6-207ENST00000556303 THOC2Q8NI27 1593 aaKnown RBP23.38■■□□□ 1.33
SNX6-207ENST00000556303 DNAJC5Q9H3Z4 198 aa23.36■■□□□ 1.33
SNX6-207ENST00000556303 KIF21AQ7Z4S6 1674 aa23.33■■□□□ 1.33
SNX6-207ENST00000556303 CFTRP13569 1480 aa23.3■■□□□ 1.32
SNX6-207ENST00000556303 MRC2Q9UBG0 1479 aa23.24■■□□□ 1.31
SNX6-207ENST00000556303 FANCD2Q9BXW9 1451 aa23.21■■□□□ 1.31
SNX6-207ENST00000556303 CEP164Q9UPV0 1460 aa23.21■■□□□ 1.31
SNX6-207ENST00000556303 WDR62O43379 1518 aa23.18■■□□□ 1.3
SNX6-207ENST00000556303 AEBP2Q6ZN18 517 aaPredicted RBP23.15■■□□□ 1.3
SNX6-207ENST00000556303 CCDC88BA6NC98 1476 aa23.14■■□□□ 1.29
SNX6-207ENST00000556303 PRDM2Q13029 1718 aa23.01■■□□□ 1.27
SNX6-207ENST00000556303 URB2Q14146 1524 aaKnown RBP22.96■■□□□ 1.27
SNX6-207ENST00000556303 ABCC8Q09428 1581 aa22.87■■□□□ 1.25
SNX6-207ENST00000556303 TOPBP1Q92547 1522 aa22.79■■□□□ 1.24
SNX6-207ENST00000556303 IFT140Q96RY7 1462 aa22.78■■□□□ 1.24
SNX6-207ENST00000556303 DNMBPQ6XZF7 1577 aa22.73■■□□□ 1.23
SNX6-207ENST00000556303 SUPT5HO00267 1087 aaKnown RBP22.67■■□□□ 1.22
SNX6-207ENST00000556303 OSCARQ8IYS5 282 aa22.66■■□□□ 1.22
SNX6-207ENST00000556303 ZNF608Q9ULD9 1512 aaPredicted RBP22.62■■□□□ 1.21
SNX6-207ENST00000556303 POLA1P09884 1462 aaPredicted RBP22.57■■□□□ 1.2
SNX6-207ENST00000556303 TARBP1Q13395 1621 aaKnown RBP22.54■■□□□ 1.2
SNX6-207ENST00000556303 SOGA1O94964 1423 aa22.5■■□□□ 1.19
SNX6-207ENST00000556303 EIF4G3O43432 1585 aaKnown RBP22.5■■□□□ 1.19
SNX6-207ENST00000556303 AQRO60306 1485 aaKnown RBP eCLIP22.47■■□□□ 1.193e-12■■■■■ 36.7
SNX6-207ENST00000556303 CUX1P39880 1505 aa22.47■■□□□ 1.19
SNX6-207ENST00000556303 FGD5Q6ZNL6 1462 aa22.45■■□□□ 1.18
SNX6-207ENST00000556303 WDR97A6NE52 1622 aa22.45■■□□□ 1.18
SNX6-207ENST00000556303 RAD54L2Q9Y4B4 1467 aa22.44■■□□□ 1.18
SNX6-207ENST00000556303 TDRD9Q8NDG6 1382 aaKnown RBP22.38■■□□□ 1.17
SNX6-207ENST00000556303 TRIM41Q8WV44 630 aa22.33■■□□□ 1.17
SNX6-207ENST00000556303 GRIN2BQ13224 1484 aa22.28■■□□□ 1.16
SNX6-207ENST00000556303 FBLN2P98095 1184 aa22.28■■□□□ 1.16
SNX6-207ENST00000556303 MAGI1Q96QZ7 1491 aaPredicted RBP22.28■■□□□ 1.16
SNX6-207ENST00000556303 ABCA10Q8WWZ4 1543 aa22.27■■□□□ 1.16
SNX6-207ENST00000556303 WRNQ14191 1432 aaPredicted RBP eCLIP22.25■■□□□ 1.15
SNX6-207ENST00000556303 SNAPC4Q5SXM2 1469 aa22.25■■□□□ 1.15
SNX6-207ENST00000556303 CHD1O14646 1710 aa22.25■■□□□ 1.15
SNX6-207ENST00000556303 GAPVD1Q14C86 1478 aa22.23■■□□□ 1.15
SNX6-207ENST00000556303 CHMP7Q8WUX9 453 aaPredicted RBP22.23■■□□□ 1.15
SNX6-207ENST00000556303 TOP2BQ02880 1626 aa22.21■■□□□ 1.15
SNX6-207ENST00000556303 ARHGEF11O15085 1522 aa22.21■■□□□ 1.15
SNX6-207ENST00000556303 RIMBP3CA6NJZ7 1639 aa22.2■■□□□ 1.15
SNX6-207ENST00000556303 RIMBP3BA6NNM3 1639 aa22.2■■□□□ 1.15
SNX6-207ENST00000556303 RIMBP3Q9UFD9 1639 aa22.2■■□□□ 1.15
SNX6-207ENST00000556303 BIVM-ERCC5R4GMW8 1640 aa22.19■■□□□ 1.14
SNX6-207ENST00000556303 SYNJ2O15056 1496 aa22.17■■□□□ 1.14
SNX6-207ENST00000556303 ABCA5Q8WWZ7 1642 aa22.15■■□□□ 1.14
SNX6-207ENST00000556303 SYNJ1O43426 1573 aa22.12■■□□□ 1.13
SNX6-207ENST00000556303 PBRM1Q86U86 1689 aa22.11■■□□□ 1.13
SNX6-207ENST00000556303 CLASP1Q7Z460 1538 aa22.07■■□□□ 1.12
SNX6-207ENST00000556303 CHIC1Q5VXU3 224 aa22.06■■□□□ 1.12
SNX6-207ENST00000556303 CYB5RLQ6IPT4 315 aa22.04■■□□□ 1.12
SNX6-207ENST00000556303 ERICH3Q5RHP9 1530 aa22.01■■□□□ 1.11
SNX6-207ENST00000556303 FHAD1B1AJZ9 1412 aa21.99■■□□□ 1.11
SNX6-207ENST00000556303 ARAP1Q96P48 1450 aa21.99■■□□□ 1.11
SNX6-207ENST00000556303 GRIN2AQ12879 1464 aa21.97■■□□□ 1.11
SNX6-207ENST00000556303 ADAMTS12P58397 1594 aa21.95■■□□□ 1.11
SNX6-207ENST00000556303 NUP160Q12769 1436 aa21.92■■□□□ 1.1
SNX6-207ENST00000556303 KIF27Q86VH2 1401 aa21.84■■□□□ 1.09
SNX6-207ENST00000556303 CEP170Q5SW79 1584 aa21.82■■□□□ 1.08
SNX6-207ENST00000556303 IGF1RP08069 1367 aa21.79■■□□□ 1.08
SNX6-207ENST00000556303 SHROOM2Q13796 1616 aa21.75■■□□□ 1.07
SNX6-207ENST00000556303 JPH4Q96JJ6 628 aa21.73■■□□□ 1.07
SNX6-207ENST00000556303 CUL7Q14999 1698 aa21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms