RNA–Protein interactions for RNA: ENST00000555306.5

APEX1-209, Transcript of apurinic/apyrimidinic endodeoxyribonuclease 1, humanhuman

TSL 5

Gene APEX1, Length 898 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APEX1-209ENST00000555306 NISCHQ9Y2I1 1504 aa28.21■■■□□ 2.11
APEX1-209ENST00000555306 CCDC180Q9P1Z9 1646 aa24.9■■□□□ 1.58
APEX1-209ENST00000555306 ABCC9O60706 1549 aa23.69■■□□□ 1.38
APEX1-209ENST00000555306 ZCCHC6Q5VYS8 1495 aaKnown RBP23.61■■□□□ 1.37
APEX1-209ENST00000555306 DCAF1Q9Y4B6 1507 aa23.45■■□□□ 1.34
APEX1-209ENST00000555306 MYO15BQ96JP2 1530 aa23.38■■□□□ 1.33
APEX1-209ENST00000555306 NACADO15069 1562 aa23.27■■□□□ 1.32
APEX1-209ENST00000555306 DCAF8L2P0C7V8 631 aa23.19■■□□□ 1.3
APEX1-209ENST00000555306 RB1CC1Q8TDY2 1594 aa23.14■■□□□ 1.29
APEX1-209ENST00000555306 SCRIBQ14160 1630 aa22.61■■□□□ 1.21
APEX1-209ENST00000555306 UNC13AQ9UPW8 1703 aa22.6■■□□□ 1.21
APEX1-209ENST00000555306 SHROOM4Q9ULL8 1493 aa22.42■■□□□ 1.18
APEX1-209ENST00000555306 BICRAQ9NZM4 1560 aa22.39■■□□□ 1.18
APEX1-209ENST00000555306 PABPN1Q86U42 306 aaKnown RBP eCLIP22.2■■□□□ 1.14
APEX1-209ENST00000555306 CECR2Q9BXF3 1484 aa21.84■■□□□ 1.09
APEX1-209ENST00000555306 BAZ1AQ9NRL2 1556 aaPredicted RBP21.84■■□□□ 1.09
APEX1-209ENST00000555306 SMARCA4P51532 1647 aa21.76■■□□□ 1.07
APEX1-209ENST00000555306 EIF4G1Q04637 1599 aaKnown RBP21.74■■□□□ 1.07
APEX1-209ENST00000555306 MROH2BQ7Z745 1585 aa21.7■■□□□ 1.06
APEX1-209ENST00000555306 RSF1Q96T23 1441 aaPredicted RBP21.67■■□□□ 1.06
APEX1-209ENST00000555306 PEG3Q9GZU2 1588 aa21.61■■□□□ 1.05
APEX1-209ENST00000555306 SMARCA2P51531 1590 aa21.54■■□□□ 1.04
APEX1-209ENST00000555306 CC2D2AQ9P2K1 1620 aa21.51■■□□□ 1.03
APEX1-209ENST00000555306 ATAD2BQ9ULI0 1458 aa21.51■■□□□ 1.03
APEX1-209ENST00000555306 WIZO95785 1651 aa21.48■■□□□ 1.03
APEX1-209ENST00000555306 NCAPD3P42695 1498 aa21.45■■□□□ 1.03
APEX1-209ENST00000555306 SUPT5HO00267 1087 aaKnown RBP21.41■■□□□ 1.02
APEX1-209ENST00000555306 HMGXB3Q12766 1538 aa21.4■■□□□ 1.02
APEX1-209ENST00000555306 TOP2AP11388 1531 aaKnown RBP21.34■■□□□ 1.01
APEX1-209ENST00000555306 BAZ1BQ9UIG0 1483 aaKnown RBP21.33■■□□□ 1.01
APEX1-209ENST00000555306 DNAJC5BQ9UF47 199 aa21.26■□□□□ 0.99
APEX1-209ENST00000555306 CCDC88BA6NC98 1476 aa21.07■□□□□ 0.96
APEX1-209ENST00000555306 CADPSQ9ULU8 1353 aa20.84■□□□□ 0.93
APEX1-209ENST00000555306 CFTRP13569 1480 aa20.83■□□□□ 0.93
APEX1-209ENST00000555306 LAMC3Q9Y6N6 1575 aa20.8■□□□□ 0.92
APEX1-209ENST00000555306 PRDM2Q13029 1718 aa20.75■□□□□ 0.91
APEX1-209ENST00000555306 NESP48681 1621 aa20.66■□□□□ 0.9
APEX1-209ENST00000555306 PDS5BQ9NTI5 1447 aa20.62■□□□□ 0.89
APEX1-209ENST00000555306 FANCD2Q9BXW9 1451 aa20.56■□□□□ 0.88
APEX1-209ENST00000555306 CEP164Q9UPV0 1460 aa20.49■□□□□ 0.87
APEX1-209ENST00000555306 KIF21AQ7Z4S6 1674 aa20.48■□□□□ 0.87
APEX1-209ENST00000555306 ABCC8Q09428 1581 aa20.42■□□□□ 0.86
APEX1-209ENST00000555306 WRNQ14191 1432 aaPredicted RBP eCLIP20.41■□□□□ 0.865e-6■■■■■ 29.2
APEX1-209ENST00000555306 ERCC6Q03468 1493 aa20.39■□□□□ 0.85
APEX1-209ENST00000555306 CHIC1Q5VXU3 224 aa20.38■□□□□ 0.85
APEX1-209ENST00000555306 MRC2Q9UBG0 1479 aa20.36■□□□□ 0.85
APEX1-209ENST00000555306 BIVM-ERCC5R4GMW8 1640 aa20.35■□□□□ 0.85
APEX1-209ENST00000555306 DNMBPQ6XZF7 1577 aa20.34■□□□□ 0.85
APEX1-209ENST00000555306 TOP2BQ02880 1626 aa20.34■□□□□ 0.85
APEX1-209ENST00000555306 CUX1P39880 1505 aa20.32■□□□□ 0.84
APEX1-209ENST00000555306 URB2Q14146 1524 aaKnown RBP20.32■□□□□ 0.84
APEX1-209ENST00000555306 SYNJ1O43426 1573 aa20.3■□□□□ 0.84
APEX1-209ENST00000555306 TOPBP1Q92547 1522 aa20.3■□□□□ 0.84
APEX1-209ENST00000555306 THOC2Q8NI27 1593 aaKnown RBP20.29■□□□□ 0.84
APEX1-209ENST00000555306 WDR62O43379 1518 aa20.28■□□□□ 0.84
APEX1-209ENST00000555306 TRIM41Q8WV44 630 aa20.27■□□□□ 0.84
APEX1-209ENST00000555306 FGD5Q6ZNL6 1462 aa20.17■□□□□ 0.82
APEX1-209ENST00000555306 POLA1P09884 1462 aaPredicted RBP20.16■□□□□ 0.82
APEX1-209ENST00000555306 SOGA1O94964 1423 aa20.09■□□□□ 0.81
APEX1-209ENST00000555306 CUX2O14529 1486 aa20.08■□□□□ 0.81
APEX1-209ENST00000555306 IFT140Q96RY7 1462 aa20.06■□□□□ 0.8
APEX1-209ENST00000555306 ABCA10Q8WWZ4 1543 aa20.06■□□□□ 0.8
APEX1-209ENST00000555306 TARBP1Q13395 1621 aaKnown RBP20.05■□□□□ 0.8
APEX1-209ENST00000555306 WDR97A6NE52 1622 aa20.02■□□□□ 0.8
APEX1-209ENST00000555306 RAD54L2Q9Y4B4 1467 aa20.01■□□□□ 0.79
APEX1-209ENST00000555306 EEA1Q15075 1411 aa20■□□□□ 0.79
APEX1-209ENST00000555306 KIF27Q86VH2 1401 aa19.96■□□□□ 0.79
APEX1-209ENST00000555306 ABCA5Q8WWZ7 1642 aa19.91■□□□□ 0.78
APEX1-209ENST00000555306 RUSC2Q8N2Y8 1516 aa19.86■□□□□ 0.77
APEX1-209ENST00000555306 GAPVD1Q14C86 1478 aa19.86■□□□□ 0.77
APEX1-209ENST00000555306 TDRD9Q8NDG6 1382 aaKnown RBP19.86■□□□□ 0.77
APEX1-209ENST00000555306 ZNF608Q9ULD9 1512 aaPredicted RBP19.86■□□□□ 0.77
APEX1-209ENST00000555306 ERICH3Q5RHP9 1530 aa19.84■□□□□ 0.77
APEX1-209ENST00000555306 EIF4G3O43432 1585 aaKnown RBP19.83■□□□□ 0.76
APEX1-209ENST00000555306 CSRNP3Q8WYN3 585 aa19.82■□□□□ 0.76
APEX1-209ENST00000555306 IGF1RP08069 1367 aa19.82■□□□□ 0.76
APEX1-209ENST00000555306 AQRO60306 1485 aaKnown RBP eCLIP19.81■□□□□ 0.763e-9■■■□□ 17.9
APEX1-209ENST00000555306 GRIN2BQ13224 1484 aa19.81■□□□□ 0.76
APEX1-209ENST00000555306 PBRM1Q86U86 1689 aa19.79■□□□□ 0.76
APEX1-209ENST00000555306 CUL7Q14999 1698 aa19.76■□□□□ 0.75
APEX1-209ENST00000555306 PRXQ9BXM0 1461 aa19.73■□□□□ 0.75
APEX1-209ENST00000555306 FAM9AQ8IZU1 332 aaPredicted RBP19.72■□□□□ 0.75
APEX1-209ENST00000555306 MAGI1Q96QZ7 1491 aaPredicted RBP19.72■□□□□ 0.75
APEX1-209ENST00000555306 KIF21BO75037 1637 aa19.71■□□□□ 0.75
APEX1-209ENST00000555306 CARMIL1Q5VZK9 1371 aa19.7■□□□□ 0.74
APEX1-209ENST00000555306 FHAD1B1AJZ9 1412 aa19.68■□□□□ 0.74
APEX1-209ENST00000555306 ADAMTS12P58397 1594 aa19.66■□□□□ 0.74
APEX1-209ENST00000555306 SNAPC4Q5SXM2 1469 aa19.65■□□□□ 0.74
APEX1-209ENST00000555306 RAPGEF2Q9Y4G8 1499 aa19.65■□□□□ 0.74
APEX1-209ENST00000555306 SYNJ2O15056 1496 aa19.61■□□□□ 0.73
APEX1-209ENST00000555306 GOLGA3Q08378 1498 aa19.6■□□□□ 0.73
APEX1-209ENST00000555306 GRIN2AQ12879 1464 aa19.54■□□□□ 0.72
APEX1-209ENST00000555306 CHMP7Q8WUX9 453 aaPredicted RBP19.52■□□□□ 0.72
APEX1-209ENST00000555306 CHD1O14646 1710 aa19.48■□□□□ 0.71
APEX1-209ENST00000555306 TNIKQ9UKE5 1360 aa19.48■□□□□ 0.71
APEX1-209ENST00000555306 LOC105371045A0A1W2PR82 267 aa19.47■□□□□ 0.71
APEX1-209ENST00000555306 NUP160Q12769 1436 aa19.45■□□□□ 0.7
APEX1-209ENST00000555306 CTTNBP2Q8WZ74 1663 aa19.44■□□□□ 0.7
APEX1-209ENST00000555306 UBTFP17480 764 aaKnown RBP19.44■□□□□ 0.7
APEX1-209ENST00000555306 FBLN2P98095 1184 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms