RNA–Protein interactions for RNA: ENST00000555305.5

IFT43-209, Transcript of intraflagellar transport 43, humanhuman

TSL 2

Gene IFT43, Length 1,765 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
IFT43-209ENST00000555305 NISCHQ9Y2I1 1504 aa32.25■■■□□ 2.75
IFT43-209ENST00000555305 CCDC180Q9P1Z9 1646 aa28.06■■■□□ 2.08
IFT43-209ENST00000555305 ZCCHC6Q5VYS8 1495 aaKnown RBP27.15■■□□□ 1.94
IFT43-209ENST00000555305 DCAF1Q9Y4B6 1507 aa26.78■■□□□ 1.88
IFT43-209ENST00000555305 DCAF8L2P0C7V8 631 aa26.45■■□□□ 1.82
IFT43-209ENST00000555305 MYO15BQ96JP2 1530 aa26.41■■□□□ 1.82
IFT43-209ENST00000555305 SHROOM4Q9ULL8 1493 aa26.3■■□□□ 1.8
IFT43-209ENST00000555305 ABCC9O60706 1549 aa26.17■■□□□ 1.78
IFT43-209ENST00000555305 NACADO15069 1562 aa26.11■■□□□ 1.77
IFT43-209ENST00000555305 RB1CC1Q8TDY2 1594 aa25.8■■□□□ 1.72
IFT43-209ENST00000555305 SCRIBQ14160 1630 aa25.69■■□□□ 1.7
IFT43-209ENST00000555305 SUPT5HO00267 1087 aaKnown RBP25.49■■□□□ 1.67
IFT43-209ENST00000555305 UNC13AQ9UPW8 1703 aa25.1■■□□□ 1.61
IFT43-209ENST00000555305 RSF1Q96T23 1441 aaPredicted RBP25.08■■□□□ 1.61
IFT43-209ENST00000555305 BAZ1AQ9NRL2 1556 aaPredicted RBP24.93■■□□□ 1.58
IFT43-209ENST00000555305 CECR2Q9BXF3 1484 aa24.93■■□□□ 1.58
IFT43-209ENST00000555305 BICRAQ9NZM4 1560 aa24.89■■□□□ 1.57
IFT43-209ENST00000555305 MROH2BQ7Z745 1585 aa24.85■■□□□ 1.57
IFT43-209ENST00000555305 SMARCA4P51532 1647 aa24.72■■□□□ 1.55
IFT43-209ENST00000555305 PABPN1Q86U42 306 aaKnown RBP eCLIP24.7■■□□□ 1.54
IFT43-209ENST00000555305 WIZO95785 1651 aa24.63■■□□□ 1.53
IFT43-209ENST00000555305 CHIC1Q5VXU3 224 aa24.57■■□□□ 1.52
IFT43-209ENST00000555305 TOP2AP11388 1531 aaKnown RBP24.5■■□□□ 1.51
IFT43-209ENST00000555305 PEG3Q9GZU2 1588 aa24.48■■□□□ 1.51
IFT43-209ENST00000555305 SMARCA2P51531 1590 aa24.34■■□□□ 1.49
IFT43-209ENST00000555305 ATAD2BQ9ULI0 1458 aa24.27■■□□□ 1.48
IFT43-209ENST00000555305 CCDC88BA6NC98 1476 aa24.2■■□□□ 1.47
IFT43-209ENST00000555305 EIF4G1Q04637 1599 aaKnown RBP24.17■■□□□ 1.46
IFT43-209ENST00000555305 BAZ1BQ9UIG0 1483 aaKnown RBP24.17■■□□□ 1.46
IFT43-209ENST00000555305 NCAPD3P42695 1498 aa24.07■■□□□ 1.44
IFT43-209ENST00000555305 HMGXB3Q12766 1538 aa24.07■■□□□ 1.44
IFT43-209ENST00000555305 TRIM41Q8WV44 630 aa24.06■■□□□ 1.44
IFT43-209ENST00000555305 CC2D2AQ9P2K1 1620 aa23.72■■□□□ 1.39
IFT43-209ENST00000555305 ABCC8Q09428 1581 aa23.69■■□□□ 1.38
IFT43-209ENST00000555305 WRNQ14191 1432 aaPredicted RBP eCLIP23.65■■□□□ 1.38
IFT43-209ENST00000555305 CFTRP13569 1480 aa23.59■■□□□ 1.37
IFT43-209ENST00000555305 EEA1Q15075 1411 aa23.56■■□□□ 1.36
IFT43-209ENST00000555305 LOC105371045A0A1W2PR82 267 aa23.55■■□□□ 1.36
IFT43-209ENST00000555305 FAM9AQ8IZU1 332 aaPredicted RBP23.47■■□□□ 1.35
IFT43-209ENST00000555305 CADPSQ9ULU8 1353 aa23.46■■□□□ 1.35
IFT43-209ENST00000555305 SYNJ1O43426 1573 aa23.44■■□□□ 1.34
IFT43-209ENST00000555305 PRDM2Q13029 1718 aa23.44■■□□□ 1.34
IFT43-209ENST00000555305 TOP2BQ02880 1626 aa23.42■■□□□ 1.34
IFT43-209ENST00000555305 BIVM-ERCC5R4GMW8 1640 aa23.37■■□□□ 1.33
IFT43-209ENST00000555305 SOGA1O94964 1423 aa23.33■■□□□ 1.33
IFT43-209ENST00000555305 CSRNP3Q8WYN3 585 aa23.29■■□□□ 1.32
IFT43-209ENST00000555305 CUX1P39880 1505 aa23.24■■□□□ 1.31
IFT43-209ENST00000555305 LAMC3Q9Y6N6 1575 aa23.22■■□□□ 1.31
IFT43-209ENST00000555305 FANCD2Q9BXW9 1451 aa23.17■■□□□ 1.3
IFT43-209ENST00000555305 RUSC2Q8N2Y8 1516 aa23.16■■□□□ 1.3
IFT43-209ENST00000555305 GOLGA3Q08378 1498 aa23.15■■□□□ 1.3
IFT43-209ENST00000555305 CEP164Q9UPV0 1460 aa23.15■■□□□ 1.3
IFT43-209ENST00000555305 KIF21BO75037 1637 aa23.14■■□□□ 1.29
IFT43-209ENST00000555305 TNIKQ9UKE5 1360 aa23.13■■□□□ 1.29
IFT43-209ENST00000555305 KIF27Q86VH2 1401 aa23.07■■□□□ 1.28
IFT43-209ENST00000555305 PDS5BQ9NTI5 1447 aa23.06■■□□□ 1.28
IFT43-209ENST00000555305 EHMT2Q96KQ7 1210 aa23.04■■□□□ 1.28
IFT43-209ENST00000555305 DNMBPQ6XZF7 1577 aa23.03■■□□□ 1.28
IFT43-209ENST00000555305 NESP48681 1621 aa23.01■■□□□ 1.27
IFT43-209ENST00000555305 UBTFP17480 764 aaKnown RBP22.99■■□□□ 1.27
IFT43-209ENST00000555305 ERICH3Q5RHP9 1530 aa22.97■■□□□ 1.27
IFT43-209ENST00000555305 CEP162Q5TB80 1403 aa22.97■■□□□ 1.27
IFT43-209ENST00000555305 FGD5Q6ZNL6 1462 aa22.97■■□□□ 1.27
IFT43-209ENST00000555305 PRXQ9BXM0 1461 aa22.94■■□□□ 1.26
IFT43-209ENST00000555305 TOPBP1Q92547 1522 aa22.93■■□□□ 1.26
IFT43-209ENST00000555305 CUX2O14529 1486 aa22.88■■□□□ 1.25
IFT43-209ENST00000555305 RAPGEF2Q9Y4G8 1499 aa22.87■■□□□ 1.25
IFT43-209ENST00000555305 TRIM26Q12899 539 aaPredicted RBP22.86■■□□□ 1.25
IFT43-209ENST00000555305 DNAJC5BQ9UF47 199 aa22.84■■□□□ 1.25
IFT43-209ENST00000555305 ABCA10Q8WWZ4 1543 aa22.83■■□□□ 1.25
IFT43-209ENST00000555305 POLA1P09884 1462 aaPredicted RBP22.83■■□□□ 1.25
IFT43-209ENST00000555305 URB2Q14146 1524 aaKnown RBP22.81■■□□□ 1.24
IFT43-209ENST00000555305 PCGF6Q9BYE7 350 aa22.79■■□□□ 1.24
IFT43-209ENST00000555305 IGF1RP08069 1367 aa22.77■■□□□ 1.24
IFT43-209ENST00000555305 CLIP1P30622 1438 aa22.76■■□□□ 1.23
IFT43-209ENST00000555305 KIF21AQ7Z4S6 1674 aa22.75■■□□□ 1.23
IFT43-209ENST00000555305 MRC2Q9UBG0 1479 aa22.69■■□□□ 1.22
IFT43-209ENST00000555305 RAD54L2Q9Y4B4 1467 aa22.69■■□□□ 1.22
IFT43-209ENST00000555305 CARMIL1Q5VZK9 1371 aa22.69■■□□□ 1.22
IFT43-209ENST00000555305 WDR97A6NE52 1622 aa22.66■■□□□ 1.22
IFT43-209ENST00000555305 CUL7Q14999 1698 aa22.64■■□□□ 1.21
IFT43-209ENST00000555305 VPS8Q8N3P4 1428 aa22.62■■□□□ 1.21
IFT43-209ENST00000555305 ABCA5Q8WWZ7 1642 aa22.58■■□□□ 1.21
IFT43-209ENST00000555305 WDR62O43379 1518 aa22.56■■□□□ 1.2
IFT43-209ENST00000555305 GAPVD1Q14C86 1478 aa22.55■■□□□ 1.2
IFT43-209ENST00000555305 TARBP1Q13395 1621 aaKnown RBP22.54■■□□□ 1.2
IFT43-209ENST00000555305 ERCC6Q03468 1493 aa22.51■■□□□ 1.19
IFT43-209ENST00000555305 IFT140Q96RY7 1462 aa22.5■■□□□ 1.19
IFT43-209ENST00000555305 TDRD9Q8NDG6 1382 aaKnown RBP22.47■■□□□ 1.19
IFT43-209ENST00000555305 APLP2Q06481 763 aa22.47■■□□□ 1.19
IFT43-209ENST00000555305 ARAP1Q96P48 1450 aa22.44■■□□□ 1.18
IFT43-209ENST00000555305 ARHGAP35Q9NRY4 1499 aa22.41■■□□□ 1.18
IFT43-209ENST00000555305 HRCP23327 699 aa22.4■■□□□ 1.18
IFT43-209ENST00000555305 RANGAP1P46060 587 aaPredicted RBP22.38■■□□□ 1.17
IFT43-209ENST00000555305 THOC2Q8NI27 1593 aaKnown RBP22.37■■□□□ 1.17
IFT43-209ENST00000555305 GRIN2BQ13224 1484 aa22.37■■□□□ 1.17
IFT43-209ENST00000555305 EFCAB5A4FU69 1503 aa22.36■■□□□ 1.17
IFT43-209ENST00000555305 PPARGC1BQ86YN6 1023 aaKnown RBP22.35■■□□□ 1.17
IFT43-209ENST00000555305 FHAD1B1AJZ9 1412 aa22.35■■□□□ 1.17
IFT43-209ENST00000555305 CTTNBP2Q8WZ74 1663 aa22.34■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms