RNA–Protein interactions for RNA: ENST00000554844.1

TMEM253-204, Transcript of transmembrane protein 253, humanhuman

TSL 4

Gene TMEM253, Length 591 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM253-204ENST00000554844 NISCHQ9Y2I1 1504 aa24.25■■□□□ 1.47
TMEM253-204ENST00000554844 ABCC9O60706 1549 aa22.01■■□□□ 1.11
TMEM253-204ENST00000554844 CCDC180Q9P1Z9 1646 aa21.88■■□□□ 1.09
TMEM253-204ENST00000554844 AEBP2Q6ZN18 517 aaPredicted RBP20.97■□□□□ 0.95
TMEM253-204ENST00000554844 CHIC1Q5VXU3 224 aa20.94■□□□□ 0.94
TMEM253-204ENST00000554844 RB1CC1Q8TDY2 1594 aa20.93■□□□□ 0.94
TMEM253-204ENST00000554844 NACADO15069 1562 aa20.72■□□□□ 0.91
TMEM253-204ENST00000554844 DNAJC5BQ9UF47 199 aa20.67■□□□□ 0.9
TMEM253-204ENST00000554844 DCAF8L2P0C7V8 631 aa20.63■□□□□ 0.89
TMEM253-204ENST00000554844 PABPN1Q86U42 306 aaKnown RBP eCLIP20.45■□□□□ 0.86
TMEM253-204ENST00000554844 UNC13AQ9UPW8 1703 aa20.36■□□□□ 0.85
TMEM253-204ENST00000554844 MYO15BQ96JP2 1530 aa20.35■□□□□ 0.85
TMEM253-204ENST00000554844 BICRAQ9NZM4 1560 aa20.21■□□□□ 0.83
TMEM253-204ENST00000554844 ZCCHC6Q5VYS8 1495 aaKnown RBP20.06■□□□□ 0.8
TMEM253-204ENST00000554844 SHROOM4Q9ULL8 1493 aa20.03■□□□□ 0.8
TMEM253-204ENST00000554844 DCAF1Q9Y4B6 1507 aa20.02■□□□□ 0.8
TMEM253-204ENST00000554844 SCRIBQ14160 1630 aa19.92■□□□□ 0.78
TMEM253-204ENST00000554844 CC2D2AQ9P2K1 1620 aa19.87■□□□□ 0.77
TMEM253-204ENST00000554844 CECR2Q9BXF3 1484 aa19.86■□□□□ 0.77
TMEM253-204ENST00000554844 EIF4G1Q04637 1599 aaKnown RBP19.78■□□□□ 0.76
TMEM253-204ENST00000554844 DNAJC5Q9H3Z4 198 aa19.19■□□□□ 0.66
TMEM253-204ENST00000554844 ERCC6Q03468 1493 aa19.1■□□□□ 0.65
TMEM253-204ENST00000554844 CUX2O14529 1486 aa19.08■□□□□ 0.64
TMEM253-204ENST00000554844 NCAPD3P42695 1498 aa19.08■□□□□ 0.64
TMEM253-204ENST00000554844 ATAD2BQ9ULI0 1458 aa19.01■□□□□ 0.63
TMEM253-204ENST00000554844 SMARCA2P51531 1590 aa19.01■□□□□ 0.63
TMEM253-204ENST00000554844 SMARCA4P51532 1647 aa18.96■□□□□ 0.63
TMEM253-204ENST00000554844 HMGXB3Q12766 1538 aa18.96■□□□□ 0.63
TMEM253-204ENST00000554844 BAZ1BQ9UIG0 1483 aaKnown RBP18.88■□□□□ 0.61
TMEM253-204ENST00000554844 BAZ1AQ9NRL2 1556 aaPredicted RBP18.88■□□□□ 0.61
TMEM253-204ENST00000554844 NESP48681 1621 aa18.82■□□□□ 0.6
TMEM253-204ENST00000554844 PEG3Q9GZU2 1588 aa18.76■□□□□ 0.59
TMEM253-204ENST00000554844 LAMC3Q9Y6N6 1575 aa18.73■□□□□ 0.59
TMEM253-204ENST00000554844 THOC2Q8NI27 1593 aaKnown RBP18.68■□□□□ 0.58
TMEM253-204ENST00000554844 MROH2BQ7Z745 1585 aa18.66■□□□□ 0.58
TMEM253-204ENST00000554844 PDS5BQ9NTI5 1447 aa18.66■□□□□ 0.58
TMEM253-204ENST00000554844 KIF21AQ7Z4S6 1674 aa18.61■□□□□ 0.57
TMEM253-204ENST00000554844 CADPSQ9ULU8 1353 aa18.52■□□□□ 0.55
TMEM253-204ENST00000554844 MRC2Q9UBG0 1479 aa18.48■□□□□ 0.55
TMEM253-204ENST00000554844 WIZO95785 1651 aa18.44■□□□□ 0.54
TMEM253-204ENST00000554844 WDR62O43379 1518 aa18.41■□□□□ 0.54
TMEM253-204ENST00000554844 CEP164Q9UPV0 1460 aa18.39■□□□□ 0.54
TMEM253-204ENST00000554844 TRIM41Q8WV44 630 aa18.36■□□□□ 0.53
TMEM253-204ENST00000554844 PHF23Q9BUL5 403 aaPredicted RBP18.36■□□□□ 0.53
TMEM253-204ENST00000554844 FANCD2Q9BXW9 1451 aa18.33■□□□□ 0.52
TMEM253-204ENST00000554844 CFTRP13569 1480 aa18.26■□□□□ 0.51
TMEM253-204ENST00000554844 TOP2AP11388 1531 aaKnown RBP18.23■□□□□ 0.51
TMEM253-204ENST00000554844 RSF1Q96T23 1441 aaPredicted RBP18.21■□□□□ 0.51
TMEM253-204ENST00000554844 OSCARQ8IYS5 282 aa18.18■□□□□ 0.5
TMEM253-204ENST00000554844 URB2Q14146 1524 aaKnown RBP18.14■□□□□ 0.49
TMEM253-204ENST00000554844 PRDM2Q13029 1718 aa18.11■□□□□ 0.49
TMEM253-204ENST00000554844 IFT140Q96RY7 1462 aa18.02■□□□□ 0.48
TMEM253-204ENST00000554844 CCDC88BA6NC98 1476 aa18■□□□□ 0.47
TMEM253-204ENST00000554844 ABCC8Q09428 1581 aa17.96■□□□□ 0.46
TMEM253-204ENST00000554844 TOPBP1Q92547 1522 aa17.94■□□□□ 0.46
TMEM253-204ENST00000554844 ZNF608Q9ULD9 1512 aaPredicted RBP17.94■□□□□ 0.46
TMEM253-204ENST00000554844 RIMBP3CA6NJZ7 1639 aa17.93■□□□□ 0.46
TMEM253-204ENST00000554844 RIMBP3BA6NNM3 1639 aa17.93■□□□□ 0.46
TMEM253-204ENST00000554844 RIMBP3Q9UFD9 1639 aa17.93■□□□□ 0.46
TMEM253-204ENST00000554844 DNMBPQ6XZF7 1577 aa17.89■□□□□ 0.45
TMEM253-204ENST00000554844 SENP3Q9H4L4 574 aaPredicted RBP17.89■□□□□ 0.45
TMEM253-204ENST00000554844 EIF4G3O43432 1585 aaKnown RBP17.88■□□□□ 0.45
TMEM253-204ENST00000554844 ARHGEF11O15085 1522 aa17.86■□□□□ 0.45
TMEM253-204ENST00000554844 FBLN2P98095 1184 aa17.78■□□□□ 0.44
TMEM253-204ENST00000554844 CHD1O14646 1710 aa17.78■□□□□ 0.44
TMEM253-204ENST00000554844 AQRO60306 1485 aaKnown RBP eCLIP17.77■□□□□ 0.44
TMEM253-204ENST00000554844 TARBP1Q13395 1621 aaKnown RBP17.76■□□□□ 0.43
TMEM253-204ENST00000554844 CYB5RLQ6IPT4 315 aa17.75■□□□□ 0.43
TMEM253-204ENST00000554844 POLA1P09884 1462 aaPredicted RBP17.75■□□□□ 0.43
TMEM253-204ENST00000554844 SOGA1O94964 1423 aa17.69■□□□□ 0.42
TMEM253-204ENST00000554844 TRHP20396 242 aaPredicted RBP17.67■□□□□ 0.42
TMEM253-204ENST00000554844 RAD54L2Q9Y4B4 1467 aa17.67■□□□□ 0.42
TMEM253-204ENST00000554844 WDR97A6NE52 1622 aa17.65■□□□□ 0.42
TMEM253-204ENST00000554844 ARAP1Q96P48 1450 aa17.65■□□□□ 0.42
TMEM253-204ENST00000554844 TDRD9Q8NDG6 1382 aaKnown RBP17.65■□□□□ 0.42
TMEM253-204ENST00000554844 SNAPC4Q5SXM2 1469 aa17.63■□□□□ 0.41
TMEM253-204ENST00000554844 FGD5Q6ZNL6 1462 aa17.63■□□□□ 0.41
TMEM253-204ENST00000554844 CHMP7Q8WUX9 453 aaPredicted RBP17.62■□□□□ 0.41
TMEM253-204ENST00000554844 SYNJ1O43426 1573 aa17.6■□□□□ 0.41
TMEM253-204ENST00000554844 MAGI1Q96QZ7 1491 aaPredicted RBP17.59■□□□□ 0.41
TMEM253-204ENST00000554844 GRIN2BQ13224 1484 aa17.56■□□□□ 0.4
TMEM253-204ENST00000554844 CUX1P39880 1505 aa17.55■□□□□ 0.4
TMEM253-204ENST00000554844 CLASP1Q7Z460 1538 aa17.54■□□□□ 0.4
TMEM253-204ENST00000554844 SYNJ2O15056 1496 aa17.52■□□□□ 0.4
TMEM253-204ENST00000554844 PBRM1Q86U86 1689 aa17.48■□□□□ 0.39
TMEM253-204ENST00000554844 GAPVD1Q14C86 1478 aa17.47■□□□□ 0.39
TMEM253-204ENST00000554844 ABCA10Q8WWZ4 1543 aa17.42■□□□□ 0.38
TMEM253-204ENST00000554844 ABCA5Q8WWZ7 1642 aa17.39■□□□□ 0.37
TMEM253-204ENST00000554844 SUPT5HO00267 1087 aaKnown RBP17.37■□□□□ 0.37
TMEM253-204ENST00000554844 WRNQ14191 1432 aaPredicted RBP eCLIP17.35■□□□□ 0.37
TMEM253-204ENST00000554844 GRIN2AQ12879 1464 aa17.32■□□□□ 0.36
TMEM253-204ENST00000554844 ADAMTS12P58397 1594 aa17.3■□□□□ 0.36
TMEM253-204ENST00000554844 TOP2BQ02880 1626 aa17.25■□□□□ 0.35
TMEM253-204ENST00000554844 BIVM-ERCC5R4GMW8 1640 aa17.25■□□□□ 0.35
TMEM253-204ENST00000554844 FHAD1B1AJZ9 1412 aa17.25■□□□□ 0.35
TMEM253-204ENST00000554844 CEP170Q5SW79 1584 aa17.24■□□□□ 0.35
TMEM253-204ENST00000554844 NUP160Q12769 1436 aa17.24■□□□□ 0.35
TMEM253-204ENST00000554844 PLPPR3Q6T4P5 718 aa17.22■□□□□ 0.35
TMEM253-204ENST00000554844 ERCC6L2Q5T890 1561 aa17.22■□□□□ 0.35
TMEM253-204ENST00000554844 ERICH3Q5RHP9 1530 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms