RNA–Protein interactions for RNA: ENST00000554808.1

LINC01397-201, Transcript of long intergenic non-protein coding RNA 1397, humanhuman

TSL 4 BASIC

Gene LINC01397, Length 579 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01397-201ENST00000554808 NISCHQ9Y2I1 1504 aa19.22■□□□□ 0.67
LINC01397-201ENST00000554808 CCDC180Q9P1Z9 1646 aa17.18■□□□□ 0.34
LINC01397-201ENST00000554808 ABCC9O60706 1549 aa16.67■□□□□ 0.26
LINC01397-201ENST00000554808 ZCCHC6Q5VYS8 1495 aaKnown RBP16.08■□□□□ 0.16
LINC01397-201ENST00000554808 MYO15BQ96JP2 1530 aa16.02■□□□□ 0.15
LINC01397-201ENST00000554808 DCAF1Q9Y4B6 1507 aa16.01■□□□□ 0.15
LINC01397-201ENST00000554808 NACADO15069 1562 aa16■□□□□ 0.15
LINC01397-201ENST00000554808 RB1CC1Q8TDY2 1594 aa15.97■□□□□ 0.15
LINC01397-201ENST00000554808 DCAF8L2P0C7V8 631 aa15.78■□□□□ 0.12
LINC01397-201ENST00000554808 DNAJC5BQ9UF47 199 aa15.73■□□□□ 0.11
LINC01397-201ENST00000554808 UNC13AQ9UPW8 1703 aa15.71■□□□□ 0.11
LINC01397-201ENST00000554808 SCRIBQ14160 1630 aa15.52■□□□□ 0.08
LINC01397-201ENST00000554808 BICRAQ9NZM4 1560 aa15.45■□□□□ 0.06
LINC01397-201ENST00000554808 SHROOM4Q9ULL8 1493 aa15.4■□□□□ 0.06
LINC01397-201ENST00000554808 PABPN1Q86U42 306 aaKnown RBP eCLIP15.38■□□□□ 0.05
LINC01397-201ENST00000554808 CC2D2AQ9P2K1 1620 aa15.13■□□□□ 0.01
LINC01397-201ENST00000554808 EIF4G1Q04637 1599 aaKnown RBP15.04■□□□□ -0
LINC01397-201ENST00000554808 CECR2Q9BXF3 1484 aa15.02■□□□□ -0
LINC01397-201ENST00000554808 BAZ1AQ9NRL2 1556 aaPredicted RBP14.95□□□□□ -0.02
LINC01397-201ENST00000554808 SMARCA4P51532 1647 aa14.93□□□□□ -0.02
LINC01397-201ENST00000554808 PEG3Q9GZU2 1588 aa14.81□□□□□ -0.04
LINC01397-201ENST00000554808 SMARCA2P51531 1590 aa14.8□□□□□ -0.04
LINC01397-201ENST00000554808 MROH2BQ7Z745 1585 aa14.77□□□□□ -0.05
LINC01397-201ENST00000554808 HMGXB3Q12766 1538 aa14.72□□□□□ -0.05
LINC01397-201ENST00000554808 ATAD2BQ9ULI0 1458 aa14.69□□□□□ -0.06
LINC01397-201ENST00000554808 WIZO95785 1651 aa14.68□□□□□ -0.06
LINC01397-201ENST00000554808 NCAPD3P42695 1498 aa14.68□□□□□ -0.06
LINC01397-201ENST00000554808 RSF1Q96T23 1441 aaPredicted RBP14.66□□□□□ -0.06
LINC01397-201ENST00000554808 BAZ1BQ9UIG0 1483 aaKnown RBP14.63□□□□□ -0.07
LINC01397-201ENST00000554808 TOP2AP11388 1531 aaKnown RBP14.56□□□□□ -0.08
LINC01397-201ENST00000554808 DNAJC5Q9H3Z4 198 aa14.53□□□□□ -0.08
LINC01397-201ENST00000554808 CUX2O14529 1486 aa14.46□□□□□ -0.09
LINC01397-201ENST00000554808 PRDM2Q13029 1718 aa14.43□□□□□ -0.1
LINC01397-201ENST00000554808 ERCC6Q03468 1493 aa14.38□□□□□ -0.11
LINC01397-201ENST00000554808 LAMC3Q9Y6N6 1575 aa14.36□□□□□ -0.11
LINC01397-201ENST00000554808 SUPT5HO00267 1087 aaKnown RBP14.35□□□□□ -0.11
LINC01397-201ENST00000554808 THOC2Q8NI27 1593 aaKnown RBP14.31□□□□□ -0.12
LINC01397-201ENST00000554808 NESP48681 1621 aa14.3□□□□□ -0.12
LINC01397-201ENST00000554808 CCDC88BA6NC98 1476 aa14.3□□□□□ -0.12
LINC01397-201ENST00000554808 KIF21AQ7Z4S6 1674 aa14.24□□□□□ -0.13
LINC01397-201ENST00000554808 CADPSQ9ULU8 1353 aa14.22□□□□□ -0.13
LINC01397-201ENST00000554808 CFTRP13569 1480 aa14.22□□□□□ -0.13
LINC01397-201ENST00000554808 PDS5BQ9NTI5 1447 aa14.16□□□□□ -0.14
LINC01397-201ENST00000554808 FANCD2Q9BXW9 1451 aa14.09□□□□□ -0.15
LINC01397-201ENST00000554808 CEP164Q9UPV0 1460 aa14.09□□□□□ -0.15
LINC01397-201ENST00000554808 ABCC8Q09428 1581 aa14□□□□□ -0.17
LINC01397-201ENST00000554808 WDR62O43379 1518 aa14□□□□□ -0.17
LINC01397-201ENST00000554808 MRC2Q9UBG0 1479 aa14□□□□□ -0.17
LINC01397-201ENST00000554808 DNMBPQ6XZF7 1577 aa13.96□□□□□ -0.17
LINC01397-201ENST00000554808 BIVM-ERCC5R4GMW8 1640 aa13.93□□□□□ -0.18
LINC01397-201ENST00000554808 URB2Q14146 1524 aaKnown RBP13.91□□□□□ -0.18
LINC01397-201ENST00000554808 TOPBP1Q92547 1522 aa13.9□□□□□ -0.18
LINC01397-201ENST00000554808 TOP2BQ02880 1626 aa13.89□□□□□ -0.19
LINC01397-201ENST00000554808 WRNQ14191 1432 aaPredicted RBP eCLIP13.86□□□□□ -0.19
LINC01397-201ENST00000554808 CUX1P39880 1505 aa13.85□□□□□ -0.19
LINC01397-201ENST00000554808 SYNJ1O43426 1573 aa13.83□□□□□ -0.2
LINC01397-201ENST00000554808 WDR97A6NE52 1622 aa13.82□□□□□ -0.2
LINC01397-201ENST00000554808 TRIM41Q8WV44 630 aa13.81□□□□□ -0.2
LINC01397-201ENST00000554808 POLA1P09884 1462 aaPredicted RBP13.78□□□□□ -0.2
LINC01397-201ENST00000554808 FGD5Q6ZNL6 1462 aa13.78□□□□□ -0.2
LINC01397-201ENST00000554808 IFT140Q96RY7 1462 aa13.78□□□□□ -0.2
LINC01397-201ENST00000554808 TARBP1Q13395 1621 aaKnown RBP13.78□□□□□ -0.2
LINC01397-201ENST00000554808 ABCA10Q8WWZ4 1543 aa13.7□□□□□ -0.22
LINC01397-201ENST00000554808 PBRM1Q86U86 1689 aa13.7□□□□□ -0.22
LINC01397-201ENST00000554808 SOGA1O94964 1423 aa13.7□□□□□ -0.22
LINC01397-201ENST00000554808 EIF4G3O43432 1585 aaKnown RBP13.7□□□□□ -0.22
LINC01397-201ENST00000554808 RIMBP3CA6NJZ7 1639 aa13.68□□□□□ -0.22
LINC01397-201ENST00000554808 RIMBP3BA6NNM3 1639 aa13.68□□□□□ -0.22
LINC01397-201ENST00000554808 RIMBP3Q9UFD9 1639 aa13.68□□□□□ -0.22
LINC01397-201ENST00000554808 ABCA5Q8WWZ7 1642 aa13.68□□□□□ -0.22
LINC01397-201ENST00000554808 RAD54L2Q9Y4B4 1467 aa13.65□□□□□ -0.22
LINC01397-201ENST00000554808 ZNF608Q9ULD9 1512 aaPredicted RBP13.61□□□□□ -0.23
LINC01397-201ENST00000554808 CHD1O14646 1710 aa13.59□□□□□ -0.23
LINC01397-201ENST00000554808 OSCARQ8IYS5 282 aa13.59□□□□□ -0.23
LINC01397-201ENST00000554808 GAPVD1Q14C86 1478 aa13.59□□□□□ -0.23
LINC01397-201ENST00000554808 ERICH3Q5RHP9 1530 aa13.59□□□□□ -0.23
LINC01397-201ENST00000554808 CUL7Q14999 1698 aa13.58□□□□□ -0.24
LINC01397-201ENST00000554808 ARHGEF11O15085 1522 aa13.58□□□□□ -0.24
LINC01397-201ENST00000554808 KIF27Q86VH2 1401 aa13.57□□□□□ -0.24
LINC01397-201ENST00000554808 GRIN2BQ13224 1484 aa13.56□□□□□ -0.24
LINC01397-201ENST00000554808 MAGI1Q96QZ7 1491 aaPredicted RBP13.55□□□□□ -0.24
LINC01397-201ENST00000554808 CHIC1Q5VXU3 224 aa13.55□□□□□ -0.24
LINC01397-201ENST00000554808 AQRO60306 1485 aaKnown RBP eCLIP13.55□□□□□ -0.24
LINC01397-201ENST00000554808 TDRD9Q8NDG6 1382 aaKnown RBP13.53□□□□□ -0.24
LINC01397-201ENST00000554808 EEA1Q15075 1411 aa13.53□□□□□ -0.24
LINC01397-201ENST00000554808 ADAMTS12P58397 1594 aa13.51□□□□□ -0.25
LINC01397-201ENST00000554808 SNAPC4Q5SXM2 1469 aa13.48□□□□□ -0.25
LINC01397-201ENST00000554808 SYNJ2O15056 1496 aa13.45□□□□□ -0.26
LINC01397-201ENST00000554808 ARAP1Q96P48 1450 aa13.44□□□□□ -0.26
LINC01397-201ENST00000554808 FHAD1B1AJZ9 1412 aa13.44□□□□□ -0.26
LINC01397-201ENST00000554808 CTTNBP2Q8WZ74 1663 aa13.41□□□□□ -0.26
LINC01397-201ENST00000554808 IGF1RP08069 1367 aa13.4□□□□□ -0.26
LINC01397-201ENST00000554808 GRIN2AQ12879 1464 aa13.4□□□□□ -0.26
LINC01397-201ENST00000554808 RUSC2Q8N2Y8 1516 aa13.39□□□□□ -0.27
LINC01397-201ENST00000554808 KIF21BO75037 1637 aa13.39□□□□□ -0.27
LINC01397-201ENST00000554808 CLASP1Q7Z460 1538 aa13.37□□□□□ -0.27
LINC01397-201ENST00000554808 RAPGEF2Q9Y4G8 1499 aa13.36□□□□□ -0.27
LINC01397-201ENST00000554808 CARMIL1Q5VZK9 1371 aa13.36□□□□□ -0.27
LINC01397-201ENST00000554808 CHMP7Q8WUX9 453 aaPredicted RBP13.35□□□□□ -0.27
LINC01397-201ENST00000554808 PRXQ9BXM0 1461 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms