RNA–Protein interactions for RNA: ENST00000554409.1

LINC00640-201, long intergenic non-protein coding RNA 640, humanhuman

TSL 3 BASIC

Gene LINC00640, Length 498 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00640-201ENST00000554409 AEBP2Q6ZN18 517 aaPredicted RBP18.9■□□□□ 0.62
LINC00640-201ENST00000554409 NISCHQ9Y2I1 1504 aa18.59■□□□□ 0.57
LINC00640-201ENST00000554409 CHIC1Q5VXU3 224 aa18.39■□□□□ 0.53
LINC00640-201ENST00000554409 CCDC180Q9P1Z9 1646 aa16.65■□□□□ 0.26
LINC00640-201ENST00000554409 ABCC9O60706 1549 aa16.27■□□□□ 0.2
LINC00640-201ENST00000554409 SENP3Q9H4L4 574 aaPredicted RBP16.2■□□□□ 0.18
LINC00640-201ENST00000554409 PHF23Q9BUL5 403 aaPredicted RBP16.09■□□□□ 0.17
LINC00640-201ENST00000554409 RB1CC1Q8TDY2 1594 aa15.67■□□□□ 0.1
LINC00640-201ENST00000554409 NACADO15069 1562 aa15.63■□□□□ 0.09
LINC00640-201ENST00000554409 MYO15BQ96JP2 1530 aa15.54■□□□□ 0.08
LINC00640-201ENST00000554409 ZCCHC6Q5VYS8 1495 aaKnown RBP15.48■□□□□ 0.07
LINC00640-201ENST00000554409 DCAF1Q9Y4B6 1507 aa15.43■□□□□ 0.06
LINC00640-201ENST00000554409 DCAF8L2P0C7V8 631 aa15.42■□□□□ 0.06
LINC00640-201ENST00000554409 UNC13AQ9UPW8 1703 aa15.35■□□□□ 0.05
LINC00640-201ENST00000554409 BICRAQ9NZM4 1560 aa15.2■□□□□ 0.02
LINC00640-201ENST00000554409 PABPN1Q86U42 306 aaKnown RBP eCLIP15.13■□□□□ 0.01
LINC00640-201ENST00000554409 SCRIBQ14160 1630 aa15.1■□□□□ 0.01
LINC00640-201ENST00000554409 SHROOM4Q9ULL8 1493 aa15.08■□□□□ 0
LINC00640-201ENST00000554409 DNAJC5BQ9UF47 199 aa14.99□□□□□ -0.01
LINC00640-201ENST00000554409 FOXD1Q16676 465 aa14.98□□□□□ -0.01
LINC00640-201ENST00000554409 PLPPR3Q6T4P5 718 aa14.92□□□□□ -0.02
LINC00640-201ENST00000554409 EIF4G1Q04637 1599 aaKnown RBP14.8□□□□□ -0.04
LINC00640-201ENST00000554409 CC2D2AQ9P2K1 1620 aa14.77□□□□□ -0.05
LINC00640-201ENST00000554409 CECR2Q9BXF3 1484 aa14.64□□□□□ -0.07
LINC00640-201ENST00000554409 SMARCA4P51532 1647 aa14.47□□□□□ -0.09
LINC00640-201ENST00000554409 BAZ1AQ9NRL2 1556 aaPredicted RBP14.43□□□□□ -0.1
LINC00640-201ENST00000554409 NCAPD3P42695 1498 aa14.41□□□□□ -0.1
LINC00640-201ENST00000554409 SMARCA2P51531 1590 aa14.39□□□□□ -0.11
LINC00640-201ENST00000554409 ATAD2BQ9ULI0 1458 aa14.38□□□□□ -0.11
LINC00640-201ENST00000554409 HMGXB3Q12766 1538 aa14.36□□□□□ -0.11
LINC00640-201ENST00000554409 PEG3Q9GZU2 1588 aa14.36□□□□□ -0.11
LINC00640-201ENST00000554409 MROH2BQ7Z745 1585 aa14.3□□□□□ -0.12
LINC00640-201ENST00000554409 ADRA2BP18089 450 aa14.26□□□□□ -0.13
LINC00640-201ENST00000554409 BAZ1BQ9UIG0 1483 aaKnown RBP14.25□□□□□ -0.13
LINC00640-201ENST00000554409 PPP6R1Q9UPN7 881 aa14.24□□□□□ -0.13
LINC00640-201ENST00000554409 WIZO95785 1651 aa14.17□□□□□ -0.14
LINC00640-201ENST00000554409 PIAS4Q8N2W9 510 aaPredicted RBP14.14□□□□□ -0.15
LINC00640-201ENST00000554409 RSF1Q96T23 1441 aaPredicted RBP14.09□□□□□ -0.15
LINC00640-201ENST00000554409 LAMC3Q9Y6N6 1575 aa14.07□□□□□ -0.16
LINC00640-201ENST00000554409 NESP48681 1621 aa14.05□□□□□ -0.16
LINC00640-201ENST00000554409 ERCC6Q03468 1493 aa14.04□□□□□ -0.16
LINC00640-201ENST00000554409 TOP2AP11388 1531 aaKnown RBP14.03□□□□□ -0.16
LINC00640-201ENST00000554409 CUX2O14529 1486 aa13.98□□□□□ -0.17
LINC00640-201ENST00000554409 MSH5O43196 834 aa13.97□□□□□ -0.17
LINC00640-201ENST00000554409 CADPSQ9ULU8 1353 aa13.95□□□□□ -0.18
LINC00640-201ENST00000554409 KIF21AQ7Z4S6 1674 aa13.95□□□□□ -0.18
LINC00640-201ENST00000554409 THOC2Q8NI27 1593 aaKnown RBP13.94□□□□□ -0.18
LINC00640-201ENST00000554409 PDS5BQ9NTI5 1447 aa13.93□□□□□ -0.18
LINC00640-201ENST00000554409 CFTRP13569 1480 aa13.87□□□□□ -0.19
LINC00640-201ENST00000554409 PRDM2Q13029 1718 aa13.85□□□□□ -0.19
LINC00640-201ENST00000554409 CCDC88BA6NC98 1476 aa13.82□□□□□ -0.2
LINC00640-201ENST00000554409 MRC2Q9UBG0 1479 aa13.81□□□□□ -0.2
LINC00640-201ENST00000554409 FANCD2Q9BXW9 1451 aa13.8□□□□□ -0.2
LINC00640-201ENST00000554409 CEP164Q9UPV0 1460 aa13.8□□□□□ -0.2
LINC00640-201ENST00000554409 WDR62O43379 1518 aa13.8□□□□□ -0.2
LINC00640-201ENST00000554409 URB2Q14146 1524 aaKnown RBP13.68□□□□□ -0.22
LINC00640-201ENST00000554409 DNAJC5Q9H3Z4 198 aa13.61□□□□□ -0.23
LINC00640-201ENST00000554409 ABCC8Q09428 1581 aa13.59□□□□□ -0.23
LINC00640-201ENST00000554409 TOPBP1Q92547 1522 aa13.58□□□□□ -0.24
LINC00640-201ENST00000554409 DNMBPQ6XZF7 1577 aa13.58□□□□□ -0.24
LINC00640-201ENST00000554409 SUPT5HO00267 1087 aaKnown RBP13.56□□□□□ -0.24
LINC00640-201ENST00000554409 POTEDQ86YR6 584 aa13.52□□□□□ -0.25
LINC00640-201ENST00000554409 IFT140Q96RY7 1462 aa13.52□□□□□ -0.25
LINC00640-201ENST00000554409 TARBP1Q13395 1621 aaKnown RBP13.47□□□□□ -0.25
LINC00640-201ENST00000554409 POLA1P09884 1462 aaPredicted RBP13.45□□□□□ -0.26
LINC00640-201ENST00000554409 ZNF608Q9ULD9 1512 aaPredicted RBP13.44□□□□□ -0.26
LINC00640-201ENST00000554409 EIF4G3O43432 1585 aaKnown RBP13.44□□□□□ -0.26
LINC00640-201ENST00000554409 CUX1P39880 1505 aa13.44□□□□□ -0.26
LINC00640-201ENST00000554409 WDR97A6NE52 1622 aa13.4□□□□□ -0.26
LINC00640-201ENST00000554409 FGD5Q6ZNL6 1462 aa13.4□□□□□ -0.26
LINC00640-201ENST00000554409 SOGA1O94964 1423 aa13.37□□□□□ -0.27
LINC00640-201ENST00000554409 RAD54L2Q9Y4B4 1467 aa13.36□□□□□ -0.27
LINC00640-201ENST00000554409 BIVM-ERCC5R4GMW8 1640 aa13.34□□□□□ -0.27
LINC00640-201ENST00000554409 AQRO60306 1485 aaKnown RBP eCLIP13.34□□□□□ -0.27
LINC00640-201ENST00000554409 TOP2BQ02880 1626 aa13.32□□□□□ -0.28
LINC00640-201ENST00000554409 OSCARQ8IYS5 282 aa13.3□□□□□ -0.28
LINC00640-201ENST00000554409 CHD1O14646 1710 aa13.3□□□□□ -0.28
LINC00640-201ENST00000554409 WRNQ14191 1432 aaPredicted RBP eCLIP13.3□□□□□ -0.28
LINC00640-201ENST00000554409 SYNJ1O43426 1573 aa13.29□□□□□ -0.28
LINC00640-201ENST00000554409 ABCA10Q8WWZ4 1543 aa13.29□□□□□ -0.28
LINC00640-201ENST00000554409 TDRD9Q8NDG6 1382 aaKnown RBP13.28□□□□□ -0.28
LINC00640-201ENST00000554409 ABCA5Q8WWZ7 1642 aa13.27□□□□□ -0.29
LINC00640-201ENST00000554409 PBRM1Q86U86 1689 aa13.27□□□□□ -0.29
LINC00640-201ENST00000554409 GRIN2BQ13224 1484 aa13.25□□□□□ -0.29
LINC00640-201ENST00000554409 MAGI1Q96QZ7 1491 aaPredicted RBP13.24□□□□□ -0.29
LINC00640-201ENST00000554409 SNAPC4Q5SXM2 1469 aa13.23□□□□□ -0.29
LINC00640-201ENST00000554409 GAPVD1Q14C86 1478 aa13.23□□□□□ -0.29
LINC00640-201ENST00000554409 SCAF1Q9H7N4 1312 aaKnown RBP13.21□□□□□ -0.29
LINC00640-201ENST00000554409 SYNJ2O15056 1496 aa13.18□□□□□ -0.3
LINC00640-201ENST00000554409 RIMBP3CA6NJZ7 1639 aa13.17□□□□□ -0.3
LINC00640-201ENST00000554409 RIMBP3BA6NNM3 1639 aa13.17□□□□□ -0.3
LINC00640-201ENST00000554409 RIMBP3Q9UFD9 1639 aa13.17□□□□□ -0.3
LINC00640-201ENST00000554409 ARHGEF11O15085 1522 aa13.15□□□□□ -0.3
LINC00640-201ENST00000554409 CLASP1Q7Z460 1538 aa13.15□□□□□ -0.3
LINC00640-201ENST00000554409 ERICH3Q5RHP9 1530 aa13.14□□□□□ -0.31
LINC00640-201ENST00000554409 FBLN2P98095 1184 aa13.14□□□□□ -0.31
LINC00640-201ENST00000554409 ADAMTS12P58397 1594 aa13.14□□□□□ -0.31
LINC00640-201ENST00000554409 CHMP7Q8WUX9 453 aaPredicted RBP13.12□□□□□ -0.31
LINC00640-201ENST00000554409 PPP4R3CPQ6ZMV5 832 aa13.1□□□□□ -0.31
LINC00640-201ENST00000554409 GRIN2AQ12879 1464 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms