RNA–Protein interactions for RNA: ENST00000554074.1

SLIRP-203, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 3

Gene SLIRP, Length 445 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-203ENST00000554074 NISCHQ9Y2I1 1504 aa16.57■□□□□ 0.24
SLIRP-203ENST00000554074 CCDC180Q9P1Z9 1646 aa14.93□□□□□ -0.02
SLIRP-203ENST00000554074 ABCC9O60706 1549 aa14.7□□□□□ -0.06
SLIRP-203ENST00000554074 RB1CC1Q8TDY2 1594 aa14.12□□□□□ -0.15
SLIRP-203ENST00000554074 NACADO15069 1562 aa14.05□□□□□ -0.16
SLIRP-203ENST00000554074 MYO15BQ96JP2 1530 aa13.92□□□□□ -0.18
SLIRP-203ENST00000554074 UNC13AQ9UPW8 1703 aa13.87□□□□□ -0.19
SLIRP-203ENST00000554074 DCAF8L2P0C7V8 631 aa13.8□□□□□ -0.2
SLIRP-203ENST00000554074 DCAF1Q9Y4B6 1507 aa13.76□□□□□ -0.21
SLIRP-203ENST00000554074 ZCCHC6Q5VYS8 1495 aaKnown RBP13.76□□□□□ -0.21
SLIRP-203ENST00000554074 DNAJC5BQ9UF47 199 aa13.73□□□□□ -0.21
SLIRP-203ENST00000554074 BICRAQ9NZM4 1560 aa13.7□□□□□ -0.22
SLIRP-203ENST00000554074 PABPN1Q86U42 306 aaKnown RBP eCLIP13.64□□□□□ -0.23
SLIRP-203ENST00000554074 SHROOM4Q9ULL8 1493 aa13.58□□□□□ -0.24
SLIRP-203ENST00000554074 SCRIBQ14160 1630 aa13.5□□□□□ -0.25
SLIRP-203ENST00000554074 CC2D2AQ9P2K1 1620 aa13.35□□□□□ -0.27
SLIRP-203ENST00000554074 EIF4G1Q04637 1599 aaKnown RBP13.34□□□□□ -0.27
SLIRP-203ENST00000554074 CECR2Q9BXF3 1484 aa13.26□□□□□ -0.29
SLIRP-203ENST00000554074 AEBP2Q6ZN18 517 aaPredicted RBP13.17□□□□□ -0.3
SLIRP-203ENST00000554074 NCAPD3P42695 1498 aa12.94□□□□□ -0.34
SLIRP-203ENST00000554074 SMARCA4P51532 1647 aa12.93□□□□□ -0.34
SLIRP-203ENST00000554074 SMARCA2P51531 1590 aa12.9□□□□□ -0.34
SLIRP-203ENST00000554074 ATAD2BQ9ULI0 1458 aa12.89□□□□□ -0.35
SLIRP-203ENST00000554074 HMGXB3Q12766 1538 aa12.88□□□□□ -0.35
SLIRP-203ENST00000554074 BAZ1AQ9NRL2 1556 aaPredicted RBP12.88□□□□□ -0.35
SLIRP-203ENST00000554074 PEG3Q9GZU2 1588 aa12.85□□□□□ -0.35
SLIRP-203ENST00000554074 BAZ1BQ9UIG0 1483 aaKnown RBP12.77□□□□□ -0.37
SLIRP-203ENST00000554074 DNAJC5Q9H3Z4 198 aa12.75□□□□□ -0.37
SLIRP-203ENST00000554074 MROH2BQ7Z745 1585 aa12.74□□□□□ -0.37
SLIRP-203ENST00000554074 CUX2O14529 1486 aa12.72□□□□□ -0.37
SLIRP-203ENST00000554074 ERCC6Q03468 1493 aa12.71□□□□□ -0.38
SLIRP-203ENST00000554074 LAMC3Q9Y6N6 1575 aa12.68□□□□□ -0.38
SLIRP-203ENST00000554074 NESP48681 1621 aa12.66□□□□□ -0.38
SLIRP-203ENST00000554074 WIZO95785 1651 aa12.61□□□□□ -0.39
SLIRP-203ENST00000554074 THOC2Q8NI27 1593 aaKnown RBP12.59□□□□□ -0.39
SLIRP-203ENST00000554074 KIF21AQ7Z4S6 1674 aa12.58□□□□□ -0.4
SLIRP-203ENST00000554074 PDS5BQ9NTI5 1447 aa12.54□□□□□ -0.4
SLIRP-203ENST00000554074 CHIC1Q5VXU3 224 aa12.53□□□□□ -0.4
SLIRP-203ENST00000554074 CADPSQ9ULU8 1353 aa12.52□□□□□ -0.41
SLIRP-203ENST00000554074 RSF1Q96T23 1441 aaPredicted RBP12.5□□□□□ -0.41
SLIRP-203ENST00000554074 TOP2AP11388 1531 aaKnown RBP12.47□□□□□ -0.41
SLIRP-203ENST00000554074 MRC2Q9UBG0 1479 aa12.44□□□□□ -0.42
SLIRP-203ENST00000554074 WDR62O43379 1518 aa12.43□□□□□ -0.42
SLIRP-203ENST00000554074 PRDM2Q13029 1718 aa12.43□□□□□ -0.42
SLIRP-203ENST00000554074 CFTRP13569 1480 aa12.42□□□□□ -0.42
SLIRP-203ENST00000554074 CEP164Q9UPV0 1460 aa12.4□□□□□ -0.43
SLIRP-203ENST00000554074 FANCD2Q9BXW9 1451 aa12.38□□□□□ -0.43
SLIRP-203ENST00000554074 CCDC88BA6NC98 1476 aa12.29□□□□□ -0.44
SLIRP-203ENST00000554074 URB2Q14146 1524 aaKnown RBP12.27□□□□□ -0.44
SLIRP-203ENST00000554074 ABCC8Q09428 1581 aa12.19□□□□□ -0.46
SLIRP-203ENST00000554074 TRIM41Q8WV44 630 aa12.19□□□□□ -0.46
SLIRP-203ENST00000554074 TOPBP1Q92547 1522 aa12.16□□□□□ -0.46
SLIRP-203ENST00000554074 IFT140Q96RY7 1462 aa12.16□□□□□ -0.46
SLIRP-203ENST00000554074 DNMBPQ6XZF7 1577 aa12.16□□□□□ -0.46
SLIRP-203ENST00000554074 TARBP1Q13395 1621 aaKnown RBP12.09□□□□□ -0.47
SLIRP-203ENST00000554074 ZNF608Q9ULD9 1512 aaPredicted RBP12.09□□□□□ -0.47
SLIRP-203ENST00000554074 OSCARQ8IYS5 282 aa12.08□□□□□ -0.48
SLIRP-203ENST00000554074 EIF4G3O43432 1585 aaKnown RBP12.08□□□□□ -0.48
SLIRP-203ENST00000554074 POLA1P09884 1462 aaPredicted RBP12.03□□□□□ -0.48
SLIRP-203ENST00000554074 WDR97A6NE52 1622 aa12.03□□□□□ -0.48
SLIRP-203ENST00000554074 CHD1O14646 1710 aa12.01□□□□□ -0.49
SLIRP-203ENST00000554074 CUX1P39880 1505 aa11.98□□□□□ -0.49
SLIRP-203ENST00000554074 RIMBP3CA6NJZ7 1639 aa11.97□□□□□ -0.49
SLIRP-203ENST00000554074 RIMBP3BA6NNM3 1639 aa11.97□□□□□ -0.49
SLIRP-203ENST00000554074 RIMBP3Q9UFD9 1639 aa11.97□□□□□ -0.49
SLIRP-203ENST00000554074 AQRO60306 1485 aaKnown RBP eCLIP11.97□□□□□ -0.492e-9■□□□□ 10.8
SLIRP-203ENST00000554074 FGD5Q6ZNL6 1462 aa11.96□□□□□ -0.49
SLIRP-203ENST00000554074 SOGA1O94964 1423 aa11.96□□□□□ -0.49
SLIRP-203ENST00000554074 RAD54L2Q9Y4B4 1467 aa11.95□□□□□ -0.5
SLIRP-203ENST00000554074 ARHGEF11O15085 1522 aa11.92□□□□□ -0.5
SLIRP-203ENST00000554074 PBRM1Q86U86 1689 aa11.91□□□□□ -0.5
SLIRP-203ENST00000554074 MAGI1Q96QZ7 1491 aaPredicted RBP11.9□□□□□ -0.5
SLIRP-203ENST00000554074 SUPT5HO00267 1087 aaKnown RBP11.9□□□□□ -0.5
SLIRP-203ENST00000554074 TDRD9Q8NDG6 1382 aaKnown RBP11.9□□□□□ -0.5
SLIRP-203ENST00000554074 GRIN2BQ13224 1484 aa11.89□□□□□ -0.51
SLIRP-203ENST00000554074 SNAPC4Q5SXM2 1469 aa11.88□□□□□ -0.51
SLIRP-203ENST00000554074 ABCA10Q8WWZ4 1543 aa11.87□□□□□ -0.51
SLIRP-203ENST00000554074 BIVM-ERCC5R4GMW8 1640 aa11.87□□□□□ -0.51
SLIRP-203ENST00000554074 ABCA5Q8WWZ7 1642 aa11.86□□□□□ -0.51
SLIRP-203ENST00000554074 SYNJ1O43426 1573 aa11.85□□□□□ -0.51
SLIRP-203ENST00000554074 TOP2BQ02880 1626 aa11.85□□□□□ -0.51
SLIRP-203ENST00000554074 CLASP1Q7Z460 1538 aa11.85□□□□□ -0.51
SLIRP-203ENST00000554074 GAPVD1Q14C86 1478 aa11.84□□□□□ -0.51
SLIRP-203ENST00000554074 SYNJ2O15056 1496 aa11.83□□□□□ -0.52
SLIRP-203ENST00000554074 FBLN2P98095 1184 aa11.83□□□□□ -0.52
SLIRP-203ENST00000554074 WRNQ14191 1432 aaPredicted RBP eCLIP11.81□□□□□ -0.52
SLIRP-203ENST00000554074 CHMP7Q8WUX9 453 aaPredicted RBP11.8□□□□□ -0.52
SLIRP-203ENST00000554074 ARAP1Q96P48 1450 aa11.8□□□□□ -0.52
SLIRP-203ENST00000554074 ADAMTS12P58397 1594 aa11.76□□□□□ -0.53
SLIRP-203ENST00000554074 CYB5RLQ6IPT4 315 aa11.75□□□□□ -0.53
SLIRP-203ENST00000554074 ERICH3Q5RHP9 1530 aa11.74□□□□□ -0.53
SLIRP-203ENST00000554074 GRIN2AQ12879 1464 aa11.73□□□□□ -0.53
SLIRP-203ENST00000554074 FHAD1B1AJZ9 1412 aa11.7□□□□□ -0.54
SLIRP-203ENST00000554074 NUP160Q12769 1436 aa11.69□□□□□ -0.54
SLIRP-203ENST00000554074 CEP170Q5SW79 1584 aa11.69□□□□□ -0.54
SLIRP-203ENST00000554074 SHROOM2Q13796 1616 aa11.68□□□□□ -0.54
SLIRP-203ENST00000554074 ERCC6L2Q5T890 1561 aa11.62□□□□□ -0.55
SLIRP-203ENST00000554074 CUL7Q14999 1698 aa11.61□□□□□ -0.55
SLIRP-203ENST00000554074 RUSC2Q8N2Y8 1516 aa11.6□□□□□ -0.55
SLIRP-203ENST00000554074 TRHP20396 242 aaPredicted RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms