RNA–Protein interactions for RNA: ENST00000553945.1

NEK9-203, Transcript of NIMA related kinase 9, humanhuman

TSL 5

Gene NEK9, Length 786 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-203ENST00000553945 NISCHQ9Y2I1 1504 aa56.41■■■■■ 6.62
NEK9-203ENST00000553945 CCDC180Q9P1Z9 1646 aa50.15■■■■■ 5.62
NEK9-203ENST00000553945 ABCC9O60706 1549 aa49.1■■■■■ 5.45
NEK9-203ENST00000553945 DCAF8L2P0C7V8 631 aa47.23■■■■■ 5.15
NEK9-203ENST00000553945 RB1CC1Q8TDY2 1594 aa47.21■■■■■ 5.15
NEK9-203ENST00000553945 NACADO15069 1562 aa47.14■■■■■ 5.14
NEK9-203ENST00000553945 ZCCHC6Q5VYS8 1495 aaKnown RBP46.98■■■■■ 5.11
NEK9-203ENST00000553945 MYO15BQ96JP2 1530 aa46.8■■■■■ 5.08
NEK9-203ENST00000553945 DCAF1Q9Y4B6 1507 aa46.64■■■■■ 5.06
NEK9-203ENST00000553945 UNC13AQ9UPW8 1703 aa46.17■■■■■ 4.98
NEK9-203ENST00000553945 PABPN1Q86U42 306 aaKnown RBP eCLIP45.89■■■■■ 4.94
NEK9-203ENST00000553945 SCRIBQ14160 1630 aa45.81■■■■■ 4.92
NEK9-203ENST00000553945 BICRAQ9NZM4 1560 aa45.77■■■■■ 4.92
NEK9-203ENST00000553945 SHROOM4Q9ULL8 1493 aa45.23■■■■■ 4.83
NEK9-203ENST00000553945 DNAJC5BQ9UF47 199 aa45.03■■■■■ 4.8
NEK9-203ENST00000553945 EIF4G1Q04637 1599 aaKnown RBP44.57■■■■■ 4.73
NEK9-203ENST00000553945 CC2D2AQ9P2K1 1620 aa44.4■■■■■ 4.7
NEK9-203ENST00000553945 CECR2Q9BXF3 1484 aa44.08■■■■■ 4.65
NEK9-203ENST00000553945 SMARCA4P51532 1647 aa43.79■■■■■ 4.6
NEK9-203ENST00000553945 BAZ1AQ9NRL2 1556 aaPredicted RBP43.73■■■■■ 4.59
NEK9-203ENST00000553945 ATAD2BQ9ULI0 1458 aa43.53■■■■■ 4.56
NEK9-203ENST00000553945 MROH2BQ7Z745 1585 aa43.5■■■■■ 4.55
NEK9-203ENST00000553945 NCAPD3P42695 1498 aa43.48■■■■■ 4.55
NEK9-203ENST00000553945 SMARCA2P51531 1590 aa43.48■■■■■ 4.55
NEK9-203ENST00000553945 PEG3Q9GZU2 1588 aa43.31■■■■■ 4.52
NEK9-203ENST00000553945 HMGXB3Q12766 1538 aa43.27■■■■■ 4.52
NEK9-203ENST00000553945 BAZ1BQ9UIG0 1483 aaKnown RBP43.19■■■■■ 4.51
NEK9-203ENST00000553945 WIZO95785 1651 aa43.05■■■■■ 4.48
NEK9-203ENST00000553945 RSF1Q96T23 1441 aaPredicted RBP42.98■■■■■ 4.47
NEK9-203ENST00000553945 TOP2AP11388 1531 aaKnown RBP42.56■■■■■ 4.4
NEK9-203ENST00000553945 NESP48681 1621 aa42.49■■■■■ 4.39
NEK9-203ENST00000553945 LAMC3Q9Y6N6 1575 aa42.36■■■■■ 4.37
NEK9-203ENST00000553945 ERCC6Q03468 1493 aa42.32■■■■■ 4.37
NEK9-203ENST00000553945 CADPSQ9ULU8 1353 aa42.23■■■■■ 4.35
NEK9-203ENST00000553945 PDS5BQ9NTI5 1447 aa42.08■■■■■ 4.33
NEK9-203ENST00000553945 CCDC88BA6NC98 1476 aa42.08■■■■■ 4.33
NEK9-203ENST00000553945 KIF21AQ7Z4S6 1674 aa42■■■■■ 4.31
NEK9-203ENST00000553945 SUPT5HO00267 1087 aaKnown RBP41.99■■■■■ 4.31
NEK9-203ENST00000553945 CFTRP13569 1480 aa41.97■■■■■ 4.31
NEK9-203ENST00000553945 THOC2Q8NI27 1593 aaKnown RBP41.82■■■■■ 4.29
NEK9-203ENST00000553945 CUX2O14529 1486 aa41.81■■■■■ 4.28
NEK9-203ENST00000553945 FANCD2Q9BXW9 1451 aa41.77■■■■■ 4.28
NEK9-203ENST00000553945 CEP164Q9UPV0 1460 aa41.72■■■■■ 4.27
NEK9-203ENST00000553945 PRDM2Q13029 1718 aa41.71■■■■■ 4.27
NEK9-203ENST00000553945 MRC2Q9UBG0 1479 aa41.65■■■■■ 4.26
NEK9-203ENST00000553945 WDR62O43379 1518 aa41.49■■■■■ 4.23
NEK9-203ENST00000553945 URB2Q14146 1524 aaKnown RBP41.35■■■■■ 4.21
NEK9-203ENST00000553945 TOPBP1Q92547 1522 aa41.1■■■■■ 4.17
NEK9-203ENST00000553945 ABCC8Q09428 1581 aa41.08■■■■■ 4.17
NEK9-203ENST00000553945 DNMBPQ6XZF7 1577 aa41.06■■■■■ 4.16
NEK9-203ENST00000553945 IFT140Q96RY7 1462 aa40.83■■■■■ 4.13
NEK9-203ENST00000553945 CUX1P39880 1505 aa40.81■■■■■ 4.12
NEK9-203ENST00000553945 POLA1P09884 1462 aaPredicted RBP40.75■■■■■ 4.11
NEK9-203ENST00000553945 FGD5Q6ZNL6 1462 aa40.67■■■■■ 4.1
NEK9-203ENST00000553945 ZNF608Q9ULD9 1512 aaPredicted RBP40.66■■■■■ 4.1
NEK9-203ENST00000553945 TARBP1Q13395 1621 aaKnown RBP40.65■■■■■ 4.1
NEK9-203ENST00000553945 SOGA1O94964 1423 aa40.6■■■■■ 4.09
NEK9-203ENST00000553945 RAD54L2Q9Y4B4 1467 aa40.59■■■■■ 4.09
NEK9-203ENST00000553945 WRNQ14191 1432 aaPredicted RBP eCLIP40.54■■■■■ 4.08
NEK9-203ENST00000553945 DNAJC5Q9H3Z4 198 aa40.53■■■■■ 4.08
NEK9-203ENST00000553945 EIF4G3O43432 1585 aaKnown RBP40.52■■■■■ 4.08
NEK9-203ENST00000553945 SYNJ1O43426 1573 aa40.46■■■■■ 4.07
NEK9-203ENST00000553945 TOP2BQ02880 1626 aa40.45■■■■■ 4.07
NEK9-203ENST00000553945 BIVM-ERCC5R4GMW8 1640 aa40.45■■■■■ 4.07
NEK9-203ENST00000553945 AQRO60306 1485 aaKnown RBP eCLIP40.45■■■■■ 4.07
NEK9-203ENST00000553945 TDRD9Q8NDG6 1382 aaKnown RBP40.37■■■■■ 4.05
NEK9-203ENST00000553945 WDR97A6NE52 1622 aa40.32■■■■■ 4.05
NEK9-203ENST00000553945 ABCA10Q8WWZ4 1543 aa40.25■■■■■ 4.03
NEK9-203ENST00000553945 GAPVD1Q14C86 1478 aa40.13■■■■■ 4.01
NEK9-203ENST00000553945 OSCARQ8IYS5 282 aa40.11■■■■■ 4.01
NEK9-203ENST00000553945 GRIN2BQ13224 1484 aa40.11■■■■■ 4.01
NEK9-203ENST00000553945 ABCA5Q8WWZ7 1642 aa40.1■■■■■ 4.01
NEK9-203ENST00000553945 PBRM1Q86U86 1689 aa40.08■■■■■ 4.01
NEK9-203ENST00000553945 SNAPC4Q5SXM2 1469 aa40.07■■■■■ 4.01
NEK9-203ENST00000553945 CHD1O14646 1710 aa40.02■■■■■ 4
NEK9-203ENST00000553945 FBLN2P98095 1184 aa40■■■■□ 3.99
NEK9-203ENST00000553945 MAGI1Q96QZ7 1491 aaPredicted RBP39.99■■■■□ 3.99
NEK9-203ENST00000553945 CHMP7Q8WUX9 453 aaPredicted RBP39.86■■■■□ 3.97
NEK9-203ENST00000553945 SYNJ2O15056 1496 aa39.84■■■■□ 3.97
NEK9-203ENST00000553945 ERICH3Q5RHP9 1530 aa39.77■■■■□ 3.96
NEK9-203ENST00000553945 ADAMTS12P58397 1594 aa39.73■■■■□ 3.95
NEK9-203ENST00000553945 KIF27Q86VH2 1401 aa39.7■■■■□ 3.95
NEK9-203ENST00000553945 FHAD1B1AJZ9 1412 aa39.65■■■■□ 3.94
NEK9-203ENST00000553945 TRIM41Q8WV44 630 aa39.64■■■■□ 3.94
NEK9-203ENST00000553945 GRIN2AQ12879 1464 aa39.6■■■■□ 3.93
NEK9-203ENST00000553945 CLASP1Q7Z460 1538 aa39.55■■■■□ 3.92
NEK9-203ENST00000553945 IGF1RP08069 1367 aa39.52■■■■□ 3.92
NEK9-203ENST00000553945 RIMBP3CA6NJZ7 1639 aa39.49■■■■□ 3.91
NEK9-203ENST00000553945 RIMBP3BA6NNM3 1639 aa39.49■■■■□ 3.91
NEK9-203ENST00000553945 RIMBP3Q9UFD9 1639 aa39.49■■■■□ 3.91
NEK9-203ENST00000553945 ARHGEF11O15085 1522 aa39.46■■■■□ 3.91
NEK9-203ENST00000553945 CUL7Q14999 1698 aa39.44■■■■□ 3.9
NEK9-203ENST00000553945 CEP170Q5SW79 1584 aa39.41■■■■□ 3.9
NEK9-203ENST00000553945 NUP160Q12769 1436 aa39.4■■■■□ 3.9
NEK9-203ENST00000553945 RUSC2Q8N2Y8 1516 aa39.37■■■■□ 3.89
NEK9-203ENST00000553945 CARMIL1Q5VZK9 1371 aa39.31■■■■□ 3.88
NEK9-203ENST00000553945 CHIC1Q5VXU3 224 aa39.15■■■■□ 3.86
NEK9-203ENST00000553945 ARAP1Q96P48 1450 aa39.15■■■■□ 3.86
NEK9-203ENST00000553945 CYB5RLQ6IPT4 315 aa39.13■■■■□ 3.85
NEK9-203ENST00000553945 SHROOM2Q13796 1616 aa39.11■■■■□ 3.85
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms