RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 NISCHQ9Y2I1 1504 aa55.23■■■■■ 6.43
TDP1-206ENST00000553569 CCDC180Q9P1Z9 1646 aa49.09■■■■■ 5.45
TDP1-206ENST00000553569 ABCC9O60706 1549 aa47.96■■■■■ 5.27
TDP1-206ENST00000553569 DCAF8L2P0C7V8 631 aa46.15■■■■■ 4.98
TDP1-206ENST00000553569 RB1CC1Q8TDY2 1594 aa46.14■■■■■ 4.98
TDP1-206ENST00000553569 NACADO15069 1562 aa46.09■■■■■ 4.97
TDP1-206ENST00000553569 ZCCHC6Q5VYS8 1495 aaKnown RBP46.05■■■■■ 4.96
TDP1-206ENST00000553569 MYO15BQ96JP2 1530 aa45.77■■■■■ 4.92
TDP1-206ENST00000553569 DCAF1Q9Y4B6 1507 aa45.66■■■■■ 4.9
TDP1-206ENST00000553569 UNC13AQ9UPW8 1703 aa45.17■■■■■ 4.82
TDP1-206ENST00000553569 SCRIBQ14160 1630 aa44.87■■■■■ 4.77
TDP1-206ENST00000553569 PABPN1Q86U42 306 aaKnown RBP eCLIP44.81■■■■■ 4.76
TDP1-206ENST00000553569 BICRAQ9NZM4 1560 aa44.74■■■■■ 4.75
TDP1-206ENST00000553569 SHROOM4Q9ULL8 1493 aa44.21■■■■■ 4.67
TDP1-206ENST00000553569 DNAJC5BQ9UF47 199 aa43.83■■■■■ 4.61
TDP1-206ENST00000553569 EIF4G1Q04637 1599 aaKnown RBP43.56■■■■■ 4.56
TDP1-206ENST00000553569 CC2D2AQ9P2K1 1620 aa43.37■■■■■ 4.53
TDP1-206ENST00000553569 CECR2Q9BXF3 1484 aa43.05■■■■■ 4.48
TDP1-206ENST00000553569 SMARCA4P51532 1647 aa42.88■■■■■ 4.45
TDP1-206ENST00000553569 BAZ1AQ9NRL2 1556 aaPredicted RBP42.82■■■■■ 4.44
TDP1-206ENST00000553569 MROH2BQ7Z745 1585 aa42.6■■■■■ 4.41
TDP1-206ENST00000553569 ATAD2BQ9ULI0 1458 aa42.57■■■■■ 4.41
TDP1-206ENST00000553569 SMARCA2P51531 1590 aa42.53■■■■■ 4.4
TDP1-206ENST00000553569 NCAPD3P42695 1498 aa42.49■■■■■ 4.39
TDP1-206ENST00000553569 PEG3Q9GZU2 1588 aa42.39■■■■■ 4.38
TDP1-206ENST00000553569 HMGXB3Q12766 1538 aa42.35■■■■■ 4.37
TDP1-206ENST00000553569 BAZ1BQ9UIG0 1483 aaKnown RBP42.27■■■■■ 4.36
TDP1-206ENST00000553569 WIZO95785 1651 aa42.19■■■■■ 4.34
TDP1-206ENST00000553569 RSF1Q96T23 1441 aaPredicted RBP42.12■■■■■ 4.33
TDP1-206ENST00000553569 TOP2AP11388 1531 aaKnown RBP41.71■■■■■ 4.27
TDP1-206ENST00000553569 NESP48681 1621 aa41.53■■■■■ 4.24
TDP1-206ENST00000553569 LAMC3Q9Y6N6 1575 aa41.4■■■■■ 4.22
TDP1-206ENST00000553569 ERCC6Q03468 1493 aa41.34■■■■■ 4.21
TDP1-206ENST00000553569 CADPSQ9ULU8 1353 aa41.27■■■■■ 4.2
TDP1-206ENST00000553569 CCDC88BA6NC98 1476 aa41.2■■■■■ 4.19
TDP1-206ENST00000553569 SUPT5HO00267 1087 aaKnown RBP41.19■■■■■ 4.18
TDP1-206ENST00000553569 PDS5BQ9NTI5 1447 aa41.1■■■■■ 4.17
TDP1-206ENST00000553569 KIF21AQ7Z4S6 1674 aa41.08■■■■■ 4.17
TDP1-206ENST00000553569 CFTRP13569 1480 aa41.06■■■■■ 4.16
TDP1-206ENST00000553569 THOC2Q8NI27 1593 aaKnown RBP40.89■■■■■ 4.14
TDP1-206ENST00000553569 PRDM2Q13029 1718 aa40.87■■■■■ 4.13
TDP1-206ENST00000553569 FANCD2Q9BXW9 1451 aa40.85■■■■■ 4.13
TDP1-206ENST00000553569 CEP164Q9UPV0 1460 aa40.81■■■■■ 4.12
TDP1-206ENST00000553569 CUX2O14529 1486 aa40.79■■■■■ 4.12
TDP1-206ENST00000553569 MRC2Q9UBG0 1479 aa40.71■■■■■ 4.11
TDP1-206ENST00000553569 WDR62O43379 1518 aa40.57■■■■■ 4.08
TDP1-206ENST00000553569 URB2Q14146 1524 aaKnown RBP40.44■■■■■ 4.06
TDP1-206ENST00000553569 TOPBP1Q92547 1522 aa40.21■■■■■ 4.03
TDP1-206ENST00000553569 DNMBPQ6XZF7 1577 aa40.19■■■■■ 4.02
TDP1-206ENST00000553569 ABCC8Q09428 1581 aa40.15■■■■■ 4.02
TDP1-206ENST00000553569 CUX1P39880 1505 aa39.97■■■■□ 3.99
TDP1-206ENST00000553569 IFT140Q96RY7 1462 aa39.91■■■■□ 3.98
TDP1-206ENST00000553569 POLA1P09884 1462 aaPredicted RBP39.88■■■■□ 3.97
TDP1-206ENST00000553569 FGD5Q6ZNL6 1462 aa39.82■■■■□ 3.97
TDP1-206ENST00000553569 TARBP1Q13395 1621 aaKnown RBP39.76■■■■□ 3.96
TDP1-206ENST00000553569 ZNF608Q9ULD9 1512 aaPredicted RBP39.75■■■■□ 3.95
TDP1-206ENST00000553569 RAD54L2Q9Y4B4 1467 aa39.73■■■■□ 3.95
TDP1-206ENST00000553569 WRNQ14191 1432 aaPredicted RBP eCLIP39.73■■■■□ 3.95
TDP1-206ENST00000553569 SOGA1O94964 1423 aa39.69■■■■□ 3.94
TDP1-206ENST00000553569 SYNJ1O43426 1573 aa39.67■■■■□ 3.94
TDP1-206ENST00000553569 BIVM-ERCC5R4GMW8 1640 aa39.65■■■■□ 3.94
TDP1-206ENST00000553569 TOP2BQ02880 1626 aa39.65■■■■□ 3.94
TDP1-206ENST00000553569 EIF4G3O43432 1585 aaKnown RBP39.64■■■■□ 3.94
TDP1-206ENST00000553569 AQRO60306 1485 aaKnown RBP eCLIP39.53■■■■□ 3.92
TDP1-206ENST00000553569 WDR97A6NE52 1622 aa39.51■■■■□ 3.92
TDP1-206ENST00000553569 TDRD9Q8NDG6 1382 aaKnown RBP39.47■■■■□ 3.91
TDP1-206ENST00000553569 ABCA10Q8WWZ4 1543 aa39.4■■■■□ 3.9
TDP1-206ENST00000553569 DNAJC5Q9H3Z4 198 aa39.35■■■■□ 3.89
TDP1-206ENST00000553569 ABCA5Q8WWZ7 1642 aa39.28■■■■□ 3.88
TDP1-206ENST00000553569 GAPVD1Q14C86 1478 aa39.25■■■■□ 3.87
TDP1-206ENST00000553569 PBRM1Q86U86 1689 aa39.25■■■■□ 3.87
TDP1-206ENST00000553569 GRIN2BQ13224 1484 aa39.23■■■■□ 3.87
TDP1-206ENST00000553569 SNAPC4Q5SXM2 1469 aa39.21■■■■□ 3.87
TDP1-206ENST00000553569 CHD1O14646 1710 aa39.14■■■■□ 3.86
TDP1-206ENST00000553569 MAGI1Q96QZ7 1491 aaPredicted RBP39.11■■■■□ 3.85
TDP1-206ENST00000553569 OSCARQ8IYS5 282 aa39.08■■■■□ 3.85
TDP1-206ENST00000553569 FBLN2P98095 1184 aa39.06■■■■□ 3.84
TDP1-206ENST00000553569 SYNJ2O15056 1496 aa38.96■■■■□ 3.83
TDP1-206ENST00000553569 ERICH3Q5RHP9 1530 aa38.93■■■■□ 3.82
TDP1-206ENST00000553569 CHMP7Q8WUX9 453 aaPredicted RBP38.92■■■■□ 3.82
TDP1-206ENST00000553569 ADAMTS12P58397 1594 aa38.91■■■■□ 3.82
TDP1-206ENST00000553569 KIF27Q86VH2 1401 aa38.88■■■■□ 3.81
TDP1-206ENST00000553569 TRIM41Q8WV44 630 aa38.86■■■■□ 3.81
TDP1-206ENST00000553569 FHAD1B1AJZ9 1412 aa38.79■■■■□ 3.8
TDP1-206ENST00000553569 GRIN2AQ12879 1464 aa38.73■■■■□ 3.79
TDP1-206ENST00000553569 IGF1RP08069 1367 aa38.67■■■■□ 3.78
TDP1-206ENST00000553569 CLASP1Q7Z460 1538 aa38.66■■■■□ 3.78
TDP1-206ENST00000553569 CUL7Q14999 1698 aa38.65■■■■□ 3.78
TDP1-206ENST00000553569 RUSC2Q8N2Y8 1516 aa38.6■■■■□ 3.77
TDP1-206ENST00000553569 CEP170Q5SW79 1584 aa38.57■■■■□ 3.76
TDP1-206ENST00000553569 RIMBP3CA6NJZ7 1639 aa38.55■■■■□ 3.76
TDP1-206ENST00000553569 RIMBP3BA6NNM3 1639 aa38.55■■■■□ 3.76
TDP1-206ENST00000553569 RIMBP3Q9UFD9 1639 aa38.55■■■■□ 3.76
TDP1-206ENST00000553569 NUP160Q12769 1436 aa38.54■■■■□ 3.76
TDP1-206ENST00000553569 ARHGEF11O15085 1522 aa38.53■■■■□ 3.76
TDP1-206ENST00000553569 CARMIL1Q5VZK9 1371 aa38.47■■■■□ 3.75
TDP1-206ENST00000553569 CHIC1Q5VXU3 224 aa38.45■■■■□ 3.75
TDP1-206ENST00000553569 RAPGEF2Q9Y4G8 1499 aa38.28■■■■□ 3.72
TDP1-206ENST00000553569 SHROOM2Q13796 1616 aa38.26■■■■□ 3.71
TDP1-206ENST00000553569 ARAP1Q96P48 1450 aa38.23■■■■□ 3.71
Retrieved 100 of 20,778 RNA–protein pairs in 261.2 ms