RNA–Protein interactions for RNA: ENST00000553531.1

PTPN21-203, Transcript of protein tyrosine phosphatase, non-receptor type 21, humanhuman

TSL 3

Gene PTPN21, Length 704 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN21-203ENST00000553531 NISCHQ9Y2I1 1504 aa29.67■■■□□ 2.34
PTPN21-203ENST00000553531 CCDC180Q9P1Z9 1646 aa26.49■■□□□ 1.83
PTPN21-203ENST00000553531 ABCC9O60706 1549 aa25.99■■□□□ 1.75
PTPN21-203ENST00000553531 RB1CC1Q8TDY2 1594 aa24.93■■□□□ 1.58
PTPN21-203ENST00000553531 NACADO15069 1562 aa24.88■■□□□ 1.57
PTPN21-203ENST00000553531 MYO15BQ96JP2 1530 aa24.71■■□□□ 1.55
PTPN21-203ENST00000553531 ZCCHC6Q5VYS8 1495 aaKnown RBP24.7■■□□□ 1.55
PTPN21-203ENST00000553531 DCAF8L2P0C7V8 631 aa24.64■■□□□ 1.54
PTPN21-203ENST00000553531 DCAF1Q9Y4B6 1507 aa24.55■■□□□ 1.52
PTPN21-203ENST00000553531 UNC13AQ9UPW8 1703 aa24.53■■□□□ 1.52
PTPN21-203ENST00000553531 BICRAQ9NZM4 1560 aa24.31■■□□□ 1.48
PTPN21-203ENST00000553531 PABPN1Q86U42 306 aaKnown RBP eCLIP24.21■■□□□ 1.47
PTPN21-203ENST00000553531 SCRIBQ14160 1630 aa24.12■■□□□ 1.45
PTPN21-203ENST00000553531 DNAJC5BQ9UF47 199 aa24.05■■□□□ 1.44
PTPN21-203ENST00000553531 SHROOM4Q9ULL8 1493 aa23.93■■□□□ 1.42
PTPN21-203ENST00000553531 EIF4G1Q04637 1599 aaKnown RBP23.61■■□□□ 1.37
PTPN21-203ENST00000553531 CC2D2AQ9P2K1 1620 aa23.55■■□□□ 1.36
PTPN21-203ENST00000553531 CECR2Q9BXF3 1484 aa23.36■■□□□ 1.33
PTPN21-203ENST00000553531 SMARCA4P51532 1647 aa23.08■■□□□ 1.28
PTPN21-203ENST00000553531 BAZ1AQ9NRL2 1556 aaPredicted RBP22.97■■□□□ 1.27
PTPN21-203ENST00000553531 NCAPD3P42695 1498 aa22.97■■□□□ 1.27
PTPN21-203ENST00000553531 ATAD2BQ9ULI0 1458 aa22.96■■□□□ 1.27
PTPN21-203ENST00000553531 SMARCA2P51531 1590 aa22.89■■□□□ 1.26
PTPN21-203ENST00000553531 MROH2BQ7Z745 1585 aa22.89■■□□□ 1.25
PTPN21-203ENST00000553531 PEG3Q9GZU2 1588 aa22.88■■□□□ 1.25
PTPN21-203ENST00000553531 HMGXB3Q12766 1538 aa22.86■■□□□ 1.25
PTPN21-203ENST00000553531 BAZ1BQ9UIG0 1483 aaKnown RBP22.71■■□□□ 1.23
PTPN21-203ENST00000553531 WIZO95785 1651 aa22.65■■□□□ 1.22
PTPN21-203ENST00000553531 RSF1Q96T23 1441 aaPredicted RBP22.53■■□□□ 1.2
PTPN21-203ENST00000553531 NESP48681 1621 aa22.5■■□□□ 1.19
PTPN21-203ENST00000553531 AEBP2Q6ZN18 517 aaPredicted RBP22.45■■□□□ 1.18
PTPN21-203ENST00000553531 LAMC3Q9Y6N6 1575 aa22.38■■□□□ 1.17
PTPN21-203ENST00000553531 TOP2AP11388 1531 aaKnown RBP22.36■■□□□ 1.17
PTPN21-203ENST00000553531 ERCC6Q03468 1493 aa22.34■■□□□ 1.17
PTPN21-203ENST00000553531 KIF21AQ7Z4S6 1674 aa22.26■■□□□ 1.15
PTPN21-203ENST00000553531 THOC2Q8NI27 1593 aaKnown RBP22.24■■□□□ 1.15
PTPN21-203ENST00000553531 CADPSQ9ULU8 1353 aa22.24■■□□□ 1.15
PTPN21-203ENST00000553531 CHIC1Q5VXU3 224 aa22.23■■□□□ 1.15
PTPN21-203ENST00000553531 CUX2O14529 1486 aa22.22■■□□□ 1.15
PTPN21-203ENST00000553531 PDS5BQ9NTI5 1447 aa22.15■■□□□ 1.14
PTPN21-203ENST00000553531 CFTRP13569 1480 aa22.12■■□□□ 1.13
PTPN21-203ENST00000553531 CCDC88BA6NC98 1476 aa22.09■■□□□ 1.13
PTPN21-203ENST00000553531 PRDM2Q13029 1718 aa22.03■■□□□ 1.12
PTPN21-203ENST00000553531 FANCD2Q9BXW9 1451 aa22.01■■□□□ 1.11
PTPN21-203ENST00000553531 MRC2Q9UBG0 1479 aa22■■□□□ 1.11
PTPN21-203ENST00000553531 WDR62O43379 1518 aa21.99■■□□□ 1.11
PTPN21-203ENST00000553531 CEP164Q9UPV0 1460 aa21.98■■□□□ 1.11
PTPN21-203ENST00000553531 URB2Q14146 1524 aaKnown RBP21.85■■□□□ 1.09
PTPN21-203ENST00000553531 SUPT5HO00267 1087 aaKnown RBP21.7■■□□□ 1.06
PTPN21-203ENST00000553531 DNAJC5Q9H3Z4 198 aa21.7■■□□□ 1.06
PTPN21-203ENST00000553531 TOPBP1Q92547 1522 aa21.67■■□□□ 1.06
PTPN21-203ENST00000553531 DNMBPQ6XZF7 1577 aa21.63■■□□□ 1.05
PTPN21-203ENST00000553531 ABCC8Q09428 1581 aa21.57■■□□□ 1.04
PTPN21-203ENST00000553531 IFT140Q96RY7 1462 aa21.52■■□□□ 1.04
PTPN21-203ENST00000553531 TARBP1Q13395 1621 aaKnown RBP21.51■■□□□ 1.03
PTPN21-203ENST00000553531 ZNF608Q9ULD9 1512 aaPredicted RBP21.5■■□□□ 1.03
PTPN21-203ENST00000553531 POLA1P09884 1462 aaPredicted RBP21.48■■□□□ 1.03
PTPN21-203ENST00000553531 CUX1P39880 1505 aa21.48■■□□□ 1.03
PTPN21-203ENST00000553531 EIF4G3O43432 1585 aaKnown RBP21.43■■□□□ 1.02
PTPN21-203ENST00000553531 FGD5Q6ZNL6 1462 aa21.39■■□□□ 1.02
PTPN21-203ENST00000553531 RAD54L2Q9Y4B4 1467 aa21.38■■□□□ 1.01
PTPN21-203ENST00000553531 WDR97A6NE52 1622 aa21.33■■□□□ 1
PTPN21-203ENST00000553531 SOGA1O94964 1423 aa21.32■■□□□ 1
PTPN21-203ENST00000553531 AQRO60306 1485 aaKnown RBP eCLIP21.32■■□□□ 1
PTPN21-203ENST00000553531 BIVM-ERCC5R4GMW8 1640 aa21.27■■□□□ 1
PTPN21-203ENST00000553531 SYNJ1O43426 1573 aa21.26■□□□□ 0.99
PTPN21-203ENST00000553531 TOP2BQ02880 1626 aa21.24■□□□□ 0.99
PTPN21-203ENST00000553531 TDRD9Q8NDG6 1382 aaKnown RBP21.23■□□□□ 0.99
PTPN21-203ENST00000553531 CHD1O14646 1710 aa21.22■□□□□ 0.99
PTPN21-203ENST00000553531 WRNQ14191 1432 aaPredicted RBP eCLIP21.21■□□□□ 0.99
PTPN21-203ENST00000553531 OSCARQ8IYS5 282 aa21.18■□□□□ 0.98
PTPN21-203ENST00000553531 ABCA10Q8WWZ4 1543 aa21.18■□□□□ 0.98
PTPN21-203ENST00000553531 ABCA5Q8WWZ7 1642 aa21.17■□□□□ 0.98
PTPN21-203ENST00000553531 PBRM1Q86U86 1689 aa21.15■□□□□ 0.98
PTPN21-203ENST00000553531 SNAPC4Q5SXM2 1469 aa21.13■□□□□ 0.97
PTPN21-203ENST00000553531 GRIN2BQ13224 1484 aa21.1■□□□□ 0.97
PTPN21-203ENST00000553531 GAPVD1Q14C86 1478 aa21.08■□□□□ 0.97
PTPN21-203ENST00000553531 MAGI1Q96QZ7 1491 aaPredicted RBP21.07■□□□□ 0.96
PTPN21-203ENST00000553531 RIMBP3CA6NJZ7 1639 aa21.02■□□□□ 0.96
PTPN21-203ENST00000553531 RIMBP3BA6NNM3 1639 aa21.02■□□□□ 0.96
PTPN21-203ENST00000553531 RIMBP3Q9UFD9 1639 aa21.02■□□□□ 0.96
PTPN21-203ENST00000553531 SYNJ2O15056 1496 aa21■□□□□ 0.95
PTPN21-203ENST00000553531 CLASP1Q7Z460 1538 aa20.98■□□□□ 0.95
PTPN21-203ENST00000553531 ARHGEF11O15085 1522 aa20.97■□□□□ 0.95
PTPN21-203ENST00000553531 FBLN2P98095 1184 aa20.96■□□□□ 0.95
PTPN21-203ENST00000553531 ADAMTS12P58397 1594 aa20.96■□□□□ 0.95
PTPN21-203ENST00000553531 ERICH3Q5RHP9 1530 aa20.91■□□□□ 0.94
PTPN21-203ENST00000553531 CHMP7Q8WUX9 453 aaPredicted RBP20.89■□□□□ 0.93
PTPN21-203ENST00000553531 GRIN2AQ12879 1464 aa20.87■□□□□ 0.93
PTPN21-203ENST00000553531 TRIM41Q8WV44 630 aa20.84■□□□□ 0.93
PTPN21-203ENST00000553531 FHAD1B1AJZ9 1412 aa20.83■□□□□ 0.93
PTPN21-203ENST00000553531 CEP170Q5SW79 1584 aa20.83■□□□□ 0.92
PTPN21-203ENST00000553531 ARAP1Q96P48 1450 aa20.81■□□□□ 0.92
PTPN21-203ENST00000553531 NUP160Q12769 1436 aa20.79■□□□□ 0.92
PTPN21-203ENST00000553531 KIF27Q86VH2 1401 aa20.73■□□□□ 0.91
PTPN21-203ENST00000553531 SHROOM2Q13796 1616 aa20.72■□□□□ 0.91
PTPN21-203ENST00000553531 IGF1RP08069 1367 aa20.72■□□□□ 0.91
PTPN21-203ENST00000553531 CUL7Q14999 1698 aa20.7■□□□□ 0.91
PTPN21-203ENST00000553531 ERCC6L2Q5T890 1561 aa20.7■□□□□ 0.9
PTPN21-203ENST00000553531 RUSC2Q8N2Y8 1516 aa20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms