RNA–Protein interactions for RNA: ENST00000553099.5

RAB3IP-218, Transcript of RAB3A interacting protein, humanhuman

TSL 2 BASIC

Gene RAB3IP, Length 2,674 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB3IP-218ENST00000553099 NISCHQ9Y2I1 1504 aa19.94■□□□□ 0.78
RAB3IP-218ENST00000553099 CCDC180Q9P1Z9 1646 aa17.24■□□□□ 0.35
RAB3IP-218ENST00000553099 ZCCHC6Q5VYS8 1495 aaKnown RBP16.79■□□□□ 0.28
RAB3IP-218ENST00000553099 SHROOM4Q9ULL8 1493 aa16.65■□□□□ 0.26
RAB3IP-218ENST00000553099 DCAF8L2P0C7V8 631 aa16.64■□□□□ 0.25
RAB3IP-218ENST00000553099 DCAF1Q9Y4B6 1507 aa16.39■□□□□ 0.21
RAB3IP-218ENST00000553099 ABCC9O60706 1549 aa16.27■□□□□ 0.2
RAB3IP-218ENST00000553099 SUPT5HO00267 1087 aaKnown RBP16.12■□□□□ 0.17
RAB3IP-218ENST00000553099 MYO15BQ96JP2 1530 aa16.08■□□□□ 0.16
RAB3IP-218ENST00000553099 SCRIBQ14160 1630 aa16.04■□□□□ 0.16
RAB3IP-218ENST00000553099 NACADO15069 1562 aa16.01■□□□□ 0.15
RAB3IP-218ENST00000553099 RB1CC1Q8TDY2 1594 aa15.86■□□□□ 0.13
RAB3IP-218ENST00000553099 UNC13AQ9UPW8 1703 aa15.63■□□□□ 0.09
RAB3IP-218ENST00000553099 RSF1Q96T23 1441 aaPredicted RBP15.58■□□□□ 0.08
RAB3IP-218ENST00000553099 CECR2Q9BXF3 1484 aa15.55■□□□□ 0.08
RAB3IP-218ENST00000553099 MROH2BQ7Z745 1585 aa15.46■□□□□ 0.07
RAB3IP-218ENST00000553099 CHIC1Q5VXU3 224 aa15.42■□□□□ 0.06
RAB3IP-218ENST00000553099 PABPN1Q86U42 306 aaKnown RBP eCLIP15.42■□□□□ 0.06
RAB3IP-218ENST00000553099 WIZO95785 1651 aa15.39■□□□□ 0.05
RAB3IP-218ENST00000553099 BAZ1AQ9NRL2 1556 aaPredicted RBP15.39■□□□□ 0.05
RAB3IP-218ENST00000553099 BICRAQ9NZM4 1560 aa15.39■□□□□ 0.05
RAB3IP-218ENST00000553099 SMARCA4P51532 1647 aa15.31■□□□□ 0.04
RAB3IP-218ENST00000553099 TOP2AP11388 1531 aaKnown RBP15.15■□□□□ 0.02
RAB3IP-218ENST00000553099 TRIM41Q8WV44 630 aa15.06■□□□□ 0
RAB3IP-218ENST00000553099 SMARCA2P51531 1590 aa15.04■□□□□ -0
RAB3IP-218ENST00000553099 CCDC88BA6NC98 1476 aa15.03■□□□□ -0
RAB3IP-218ENST00000553099 PEG3Q9GZU2 1588 aa15.02■□□□□ -0
RAB3IP-218ENST00000553099 ATAD2BQ9ULI0 1458 aa14.98□□□□□ -0.01
RAB3IP-218ENST00000553099 EIF4G1Q04637 1599 aaKnown RBP14.97□□□□□ -0.01
RAB3IP-218ENST00000553099 BAZ1BQ9UIG0 1483 aaKnown RBP14.96□□□□□ -0.02
RAB3IP-218ENST00000553099 LOC105371045A0A1W2PR82 267 aa14.93□□□□□ -0.02
RAB3IP-218ENST00000553099 FAM9AQ8IZU1 332 aaPredicted RBP14.9□□□□□ -0.02
RAB3IP-218ENST00000553099 ABCC8Q09428 1581 aa14.88□□□□□ -0.03
RAB3IP-218ENST00000553099 EHMT2Q96KQ7 1210 aa14.79□□□□□ -0.04
RAB3IP-218ENST00000553099 HMGXB3Q12766 1538 aa14.78□□□□□ -0.04
RAB3IP-218ENST00000553099 NCAPD3P42695 1498 aa14.77□□□□□ -0.04
RAB3IP-218ENST00000553099 WRNQ14191 1432 aaPredicted RBP eCLIP14.68□□□□□ -0.06
RAB3IP-218ENST00000553099 CC2D2AQ9P2K1 1620 aa14.68□□□□□ -0.06
RAB3IP-218ENST00000553099 SYNJ1O43426 1573 aa14.63□□□□□ -0.07
RAB3IP-218ENST00000553099 SOGA1O94964 1423 aa14.61□□□□□ -0.07
RAB3IP-218ENST00000553099 RUSC2Q8N2Y8 1516 aa14.55□□□□□ -0.08
RAB3IP-218ENST00000553099 CFTRP13569 1480 aa14.53□□□□□ -0.08
RAB3IP-218ENST00000553099 PCGF6Q9BYE7 350 aa14.51□□□□□ -0.09
RAB3IP-218ENST00000553099 EEA1Q15075 1411 aa14.51□□□□□ -0.09
RAB3IP-218ENST00000553099 PRDM2Q13029 1718 aa14.51□□□□□ -0.09
RAB3IP-218ENST00000553099 TOP2BQ02880 1626 aa14.51□□□□□ -0.09
RAB3IP-218ENST00000553099 CSRNP3Q8WYN3 585 aa14.49□□□□□ -0.09
RAB3IP-218ENST00000553099 BIVM-ERCC5R4GMW8 1640 aa14.48□□□□□ -0.09
RAB3IP-218ENST00000553099 CADPSQ9ULU8 1353 aa14.45□□□□□ -0.1
RAB3IP-218ENST00000553099 CUX1P39880 1505 aa14.44□□□□□ -0.1
RAB3IP-218ENST00000553099 UBTFP17480 764 aaKnown RBP14.42□□□□□ -0.1
RAB3IP-218ENST00000553099 GOLGA3Q08378 1498 aa14.39□□□□□ -0.11
RAB3IP-218ENST00000553099 CEP162Q5TB80 1403 aa14.36□□□□□ -0.11
RAB3IP-218ENST00000553099 CEP164Q9UPV0 1460 aa14.36□□□□□ -0.11
RAB3IP-218ENST00000553099 TNIKQ9UKE5 1360 aa14.36□□□□□ -0.11
RAB3IP-218ENST00000553099 NESP48681 1621 aa14.35□□□□□ -0.11
RAB3IP-218ENST00000553099 KIF21BO75037 1637 aa14.35□□□□□ -0.11
RAB3IP-218ENST00000553099 TRIM26Q12899 539 aaPredicted RBP14.35□□□□□ -0.11
RAB3IP-218ENST00000553099 FANCD2Q9BXW9 1451 aa14.33□□□□□ -0.11
RAB3IP-218ENST00000553099 AEBP2Q6ZN18 517 aaPredicted RBP14.32□□□□□ -0.12
RAB3IP-218ENST00000553099 DNAJC5BQ9UF47 199 aa14.31□□□□□ -0.12
RAB3IP-218ENST00000553099 PPARGC1BQ86YN6 1023 aaKnown RBP14.31□□□□□ -0.12
RAB3IP-218ENST00000553099 RAPGEF2Q9Y4G8 1499 aa14.29□□□□□ -0.12
RAB3IP-218ENST00000553099 KIF27Q86VH2 1401 aa14.27□□□□□ -0.12
RAB3IP-218ENST00000553099 LAMC3Q9Y6N6 1575 aa14.26□□□□□ -0.13
RAB3IP-218ENST00000553099 FGD5Q6ZNL6 1462 aa14.26□□□□□ -0.13
RAB3IP-218ENST00000553099 RANGAP1P46060 587 aaPredicted RBP14.25□□□□□ -0.13
RAB3IP-218ENST00000553099 CUX2O14529 1486 aa14.23□□□□□ -0.13
RAB3IP-218ENST00000553099 DNMBPQ6XZF7 1577 aa14.21□□□□□ -0.13
RAB3IP-218ENST00000553099 TTBK1Q5TCY1 1321 aaPredicted RBP14.2□□□□□ -0.14
RAB3IP-218ENST00000553099 ERICH3Q5RHP9 1530 aa14.2□□□□□ -0.14
RAB3IP-218ENST00000553099 PRXQ9BXM0 1461 aa14.2□□□□□ -0.14
RAB3IP-218ENST00000553099 CLIP1P30622 1438 aa14.2□□□□□ -0.14
RAB3IP-218ENST00000553099 TOPBP1Q92547 1522 aa14.19□□□□□ -0.14
RAB3IP-218ENST00000553099 HRCP23327 699 aa14.18□□□□□ -0.14
RAB3IP-218ENST00000553099 KIF21AQ7Z4S6 1674 aa14.17□□□□□ -0.14
RAB3IP-218ENST00000553099 PDS5BQ9NTI5 1447 aa14.16□□□□□ -0.14
RAB3IP-218ENST00000553099 POLA1P09884 1462 aaPredicted RBP14.15□□□□□ -0.14
RAB3IP-218ENST00000553099 RAD54L2Q9Y4B4 1467 aa14.15□□□□□ -0.14
RAB3IP-218ENST00000553099 URB2Q14146 1524 aaKnown RBP14.13□□□□□ -0.15
RAB3IP-218ENST00000553099 IGF1RP08069 1367 aa14.11□□□□□ -0.15
RAB3IP-218ENST00000553099 ABCA10Q8WWZ4 1543 aa14.08□□□□□ -0.16
RAB3IP-218ENST00000553099 VPS8Q8N3P4 1428 aa14.08□□□□□ -0.16
RAB3IP-218ENST00000553099 CARMIL1Q5VZK9 1371 aa14.07□□□□□ -0.16
RAB3IP-218ENST00000553099 WDR97A6NE52 1622 aa14.04□□□□□ -0.16
RAB3IP-218ENST00000553099 APLP2Q06481 763 aa14.03□□□□□ -0.16
RAB3IP-218ENST00000553099 ARAP1Q96P48 1450 aa14.01□□□□□ -0.17
RAB3IP-218ENST00000553099 TDRD9Q8NDG6 1382 aaKnown RBP14□□□□□ -0.17
RAB3IP-218ENST00000553099 CUL7Q14999 1698 aa13.98□□□□□ -0.17
RAB3IP-218ENST00000553099 MRC2Q9UBG0 1479 aa13.98□□□□□ -0.17
RAB3IP-218ENST00000553099 ABCA5Q8WWZ7 1642 aa13.97□□□□□ -0.17
RAB3IP-218ENST00000553099 ARHGAP35Q9NRY4 1499 aa13.96□□□□□ -0.17
RAB3IP-218ENST00000553099 GAPVD1Q14C86 1478 aa13.96□□□□□ -0.17
RAB3IP-218ENST00000553099 TARBP1Q13395 1621 aaKnown RBP13.94□□□□□ -0.18
RAB3IP-218ENST00000553099 ERCC6Q03468 1493 aa13.93□□□□□ -0.18
RAB3IP-218ENST00000553099 CTTNBP2Q8WZ74 1663 aa13.91□□□□□ -0.18
RAB3IP-218ENST00000553099 PBRM1Q86U86 1689 aa13.89□□□□□ -0.19
RAB3IP-218ENST00000553099 P3H3Q8IVL6 736 aa13.88□□□□□ -0.19
RAB3IP-218ENST00000553099 WDR62O43379 1518 aa13.87□□□□□ -0.19
RAB3IP-218ENST00000553099 AQRO60306 1485 aaKnown RBP eCLIP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms