RNA–Protein interactions for RNA: ENST00000551845.5

PTCH1-225, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 809 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-225ENST00000551845 NISCHQ9Y2I1 1504 aa25.3■■□□□ 1.64
PTCH1-225ENST00000551845 ABCC9O60706 1549 aa22.92■■□□□ 1.26
PTCH1-225ENST00000551845 CCDC180Q9P1Z9 1646 aa22.4■■□□□ 1.18
PTCH1-225ENST00000551845 DNAJC5BQ9UF47 199 aa21.87■■□□□ 1.09
PTCH1-225ENST00000551845 RB1CC1Q8TDY2 1594 aa21.57■■□□□ 1.04
PTCH1-225ENST00000551845 DCAF8L2P0C7V8 631 aa21.4■■□□□ 1.02
PTCH1-225ENST00000551845 NACADO15069 1562 aa21.29■■□□□ 1
PTCH1-225ENST00000551845 PABPN1Q86U42 306 aaKnown RBP eCLIP21.27■■□□□ 1
PTCH1-225ENST00000551845 UNC13AQ9UPW8 1703 aa21.08■□□□□ 0.97
PTCH1-225ENST00000551845 ZCCHC6Q5VYS8 1495 aaKnown RBP21.04■□□□□ 0.96
PTCH1-225ENST00000551845 MYO15BQ96JP2 1530 aa20.99■□□□□ 0.95
PTCH1-225ENST00000551845 BICRAQ9NZM4 1560 aa20.92■□□□□ 0.94
PTCH1-225ENST00000551845 DCAF1Q9Y4B6 1507 aa20.91■□□□□ 0.94
PTCH1-225ENST00000551845 AEBP2Q6ZN18 517 aaPredicted RBP20.79■□□□□ 0.92
PTCH1-225ENST00000551845 CECR2Q9BXF3 1484 aa20.67■□□□□ 0.9
PTCH1-225ENST00000551845 CC2D2AQ9P2K1 1620 aa20.65■□□□□ 0.9
PTCH1-225ENST00000551845 SHROOM4Q9ULL8 1493 aa20.56■□□□□ 0.88
PTCH1-225ENST00000551845 EIF4G1Q04637 1599 aaKnown RBP20.47■□□□□ 0.87
PTCH1-225ENST00000551845 SCRIBQ14160 1630 aa20.43■□□□□ 0.86
PTCH1-225ENST00000551845 DNAJC5Q9H3Z4 198 aa20.43■□□□□ 0.86
PTCH1-225ENST00000551845 CHIC1Q5VXU3 224 aa20.4■□□□□ 0.86
PTCH1-225ENST00000551845 CUX2O14529 1486 aa19.9■□□□□ 0.78
PTCH1-225ENST00000551845 ERCC6Q03468 1493 aa19.84■□□□□ 0.77
PTCH1-225ENST00000551845 NCAPD3P42695 1498 aa19.64■□□□□ 0.73
PTCH1-225ENST00000551845 BAZ1AQ9NRL2 1556 aaPredicted RBP19.59■□□□□ 0.73
PTCH1-225ENST00000551845 ATAD2BQ9ULI0 1458 aa19.54■□□□□ 0.72
PTCH1-225ENST00000551845 SMARCA4P51532 1647 aa19.53■□□□□ 0.72
PTCH1-225ENST00000551845 NESP48681 1621 aa19.52■□□□□ 0.72
PTCH1-225ENST00000551845 MROH2BQ7Z745 1585 aa19.49■□□□□ 0.71
PTCH1-225ENST00000551845 SMARCA2P51531 1590 aa19.46■□□□□ 0.71
PTCH1-225ENST00000551845 HMGXB3Q12766 1538 aa19.46■□□□□ 0.71
PTCH1-225ENST00000551845 TRIM41Q8WV44 630 aa19.45■□□□□ 0.7
PTCH1-225ENST00000551845 THOC2Q8NI27 1593 aaKnown RBP19.4■□□□□ 0.7
PTCH1-225ENST00000551845 RSF1Q96T23 1441 aaPredicted RBP19.36■□□□□ 0.69
PTCH1-225ENST00000551845 BAZ1BQ9UIG0 1483 aaKnown RBP19.35■□□□□ 0.69
PTCH1-225ENST00000551845 PEG3Q9GZU2 1588 aa19.35■□□□□ 0.69
PTCH1-225ENST00000551845 LAMC3Q9Y6N6 1575 aa19.31■□□□□ 0.68
PTCH1-225ENST00000551845 KIF21AQ7Z4S6 1674 aa19.27■□□□□ 0.68
PTCH1-225ENST00000551845 PDS5BQ9NTI5 1447 aa19.23■□□□□ 0.67
PTCH1-225ENST00000551845 WIZO95785 1651 aa19.22■□□□□ 0.67
PTCH1-225ENST00000551845 SUPT5HO00267 1087 aaKnown RBP19.09■□□□□ 0.65
PTCH1-225ENST00000551845 MRC2Q9UBG0 1479 aa19.08■□□□□ 0.64
PTCH1-225ENST00000551845 CADPSQ9ULU8 1353 aa19.05■□□□□ 0.64
PTCH1-225ENST00000551845 TOP2AP11388 1531 aaKnown RBP19.05■□□□□ 0.64
PTCH1-225ENST00000551845 WDR62O43379 1518 aa19.02■□□□□ 0.64
PTCH1-225ENST00000551845 OSCARQ8IYS5 282 aa18.96■□□□□ 0.63
PTCH1-225ENST00000551845 CEP164Q9UPV0 1460 aa18.92■□□□□ 0.62
PTCH1-225ENST00000551845 CCDC88BA6NC98 1476 aa18.91■□□□□ 0.62
PTCH1-225ENST00000551845 CFTRP13569 1480 aa18.84■□□□□ 0.61
PTCH1-225ENST00000551845 FANCD2Q9BXW9 1451 aa18.84■□□□□ 0.61
PTCH1-225ENST00000551845 RIMBP3CA6NJZ7 1639 aa18.74■□□□□ 0.59
PTCH1-225ENST00000551845 RIMBP3BA6NNM3 1639 aa18.74■□□□□ 0.59
PTCH1-225ENST00000551845 RIMBP3Q9UFD9 1639 aa18.74■□□□□ 0.59
PTCH1-225ENST00000551845 URB2Q14146 1524 aaKnown RBP18.7■□□□□ 0.58
PTCH1-225ENST00000551845 ARHGEF11O15085 1522 aa18.62■□□□□ 0.57
PTCH1-225ENST00000551845 TRHP20396 242 aaPredicted RBP18.57■□□□□ 0.56
PTCH1-225ENST00000551845 CYB5RLQ6IPT4 315 aa18.57■□□□□ 0.56
PTCH1-225ENST00000551845 ZNF608Q9ULD9 1512 aaPredicted RBP18.56■□□□□ 0.56
PTCH1-225ENST00000551845 IFT140Q96RY7 1462 aa18.54■□□□□ 0.56
PTCH1-225ENST00000551845 PRDM2Q13029 1718 aa18.52■□□□□ 0.56
PTCH1-225ENST00000551845 ABCC8Q09428 1581 aa18.47■□□□□ 0.55
PTCH1-225ENST00000551845 EIF4G3O43432 1585 aaKnown RBP18.44■□□□□ 0.54
PTCH1-225ENST00000551845 TOPBP1Q92547 1522 aa18.43■□□□□ 0.54
PTCH1-225ENST00000551845 CHD1O14646 1710 aa18.42■□□□□ 0.54
PTCH1-225ENST00000551845 FBLN2P98095 1184 aa18.41■□□□□ 0.54
PTCH1-225ENST00000551845 ARAP1Q96P48 1450 aa18.4■□□□□ 0.54
PTCH1-225ENST00000551845 AQRO60306 1485 aaKnown RBP eCLIP18.35■□□□□ 0.53
PTCH1-225ENST00000551845 DNMBPQ6XZF7 1577 aa18.34■□□□□ 0.53
PTCH1-225ENST00000551845 SOGA1O94964 1423 aa18.29■□□□□ 0.52
PTCH1-225ENST00000551845 TARBP1Q13395 1621 aaKnown RBP18.28■□□□□ 0.52
PTCH1-225ENST00000551845 WRNQ14191 1432 aaPredicted RBP eCLIP18.27■□□□□ 0.52
PTCH1-225ENST00000551845 CUX1P39880 1505 aa18.26■□□□□ 0.51
PTCH1-225ENST00000551845 POLA1P09884 1462 aaPredicted RBP18.25■□□□□ 0.51
PTCH1-225ENST00000551845 FGD5Q6ZNL6 1462 aa18.22■□□□□ 0.51
PTCH1-225ENST00000551845 RAD54L2Q9Y4B4 1467 aa18.21■□□□□ 0.51
PTCH1-225ENST00000551845 TDRD9Q8NDG6 1382 aaKnown RBP18.18■□□□□ 0.5
PTCH1-225ENST00000551845 CHMP7Q8WUX9 453 aaPredicted RBP18.16■□□□□ 0.5
PTCH1-225ENST00000551845 SNAPC4Q5SXM2 1469 aa18.15■□□□□ 0.5
PTCH1-225ENST00000551845 CLASP1Q7Z460 1538 aa18.15■□□□□ 0.5
PTCH1-225ENST00000551845 SYNJ1O43426 1573 aa18.13■□□□□ 0.49
PTCH1-225ENST00000551845 TOP2BQ02880 1626 aa18.09■□□□□ 0.49
PTCH1-225ENST00000551845 MAGI1Q96QZ7 1491 aaPredicted RBP18.07■□□□□ 0.48
PTCH1-225ENST00000551845 WDR97A6NE52 1622 aa18.06■□□□□ 0.48
PTCH1-225ENST00000551845 ABCA10Q8WWZ4 1543 aa18.05■□□□□ 0.48
PTCH1-225ENST00000551845 GRIN2BQ13224 1484 aa18.03■□□□□ 0.48
PTCH1-225ENST00000551845 GAPVD1Q14C86 1478 aa18.02■□□□□ 0.48
PTCH1-225ENST00000551845 BIVM-ERCC5R4GMW8 1640 aa18.02■□□□□ 0.48
PTCH1-225ENST00000551845 SYNJ2O15056 1496 aa18.01■□□□□ 0.47
PTCH1-225ENST00000551845 PBRM1Q86U86 1689 aa17.95■□□□□ 0.46
PTCH1-225ENST00000551845 KIF27Q86VH2 1401 aa17.91■□□□□ 0.46
PTCH1-225ENST00000551845 PHF23Q9BUL5 403 aaPredicted RBP17.86■□□□□ 0.45
PTCH1-225ENST00000551845 IGF1RP08069 1367 aa17.86■□□□□ 0.45
PTCH1-225ENST00000551845 ERCC6L2Q5T890 1561 aa17.85■□□□□ 0.45
PTCH1-225ENST00000551845 ABCA5Q8WWZ7 1642 aa17.85■□□□□ 0.45
PTCH1-225ENST00000551845 FHAD1B1AJZ9 1412 aa17.83■□□□□ 0.45
PTCH1-225ENST00000551845 ERICH3Q5RHP9 1530 aa17.82■□□□□ 0.44
PTCH1-225ENST00000551845 SENP3Q9H4L4 574 aaPredicted RBP17.79■□□□□ 0.44
PTCH1-225ENST00000551845 GRIN2AQ12879 1464 aa17.79■□□□□ 0.44
PTCH1-225ENST00000551845 CEP170Q5SW79 1584 aa17.79■□□□□ 0.44
PTCH1-225ENST00000551845 CARMIL1Q5VZK9 1371 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms