RNA–Protein interactions for RNA: ENST00000551008.5

NPAS3-209, Transcript of neuronal PAS domain protein 3, humanhuman

TSL 1 (best) BASIC

Gene NPAS3, Length 1,002 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-209ENST00000551008 NISCHQ9Y2I1 1504 aa32.58■■■□□ 2.81
NPAS3-209ENST00000551008 CCDC180Q9P1Z9 1646 aa29.14■■■□□ 2.26
NPAS3-209ENST00000551008 ABCC9O60706 1549 aa28.74■■■□□ 2.19
NPAS3-209ENST00000551008 RB1CC1Q8TDY2 1594 aa27.5■■□□□ 1.99
NPAS3-209ENST00000551008 NACADO15069 1562 aa27.4■■□□□ 1.98
NPAS3-209ENST00000551008 MYO15BQ96JP2 1530 aa27.16■■□□□ 1.94
NPAS3-209ENST00000551008 DCAF8L2P0C7V8 631 aa27.11■■□□□ 1.93
NPAS3-209ENST00000551008 ZCCHC6Q5VYS8 1495 aaKnown RBP27.11■■□□□ 1.93
NPAS3-209ENST00000551008 UNC13AQ9UPW8 1703 aa27.08■■□□□ 1.93
NPAS3-209ENST00000551008 DCAF1Q9Y4B6 1507 aa26.94■■□□□ 1.9
NPAS3-209ENST00000551008 BICRAQ9NZM4 1560 aa26.83■■□□□ 1.89
NPAS3-209ENST00000551008 PABPN1Q86U42 306 aaKnown RBP eCLIP26.75■■□□□ 1.87
NPAS3-209ENST00000551008 DNAJC5BQ9UF47 199 aa26.72■■□□□ 1.87
NPAS3-209ENST00000551008 SCRIBQ14160 1630 aa26.54■■□□□ 1.84
NPAS3-209ENST00000551008 SHROOM4Q9ULL8 1493 aa26.36■■□□□ 1.81
NPAS3-209ENST00000551008 EIF4G1Q04637 1599 aaKnown RBP26.05■■□□□ 1.76
NPAS3-209ENST00000551008 CC2D2AQ9P2K1 1620 aa26.03■■□□□ 1.76
NPAS3-209ENST00000551008 CECR2Q9BXF3 1484 aa25.84■■□□□ 1.73
NPAS3-209ENST00000551008 AEBP2Q6ZN18 517 aaPredicted RBP25.41■■□□□ 1.66
NPAS3-209ENST00000551008 SMARCA4P51532 1647 aa25.37■■□□□ 1.65
NPAS3-209ENST00000551008 NCAPD3P42695 1498 aa25.28■■□□□ 1.64
NPAS3-209ENST00000551008 ATAD2BQ9ULI0 1458 aa25.28■■□□□ 1.64
NPAS3-209ENST00000551008 BAZ1AQ9NRL2 1556 aaPredicted RBP25.23■■□□□ 1.63
NPAS3-209ENST00000551008 SMARCA2P51531 1590 aa25.19■■□□□ 1.62
NPAS3-209ENST00000551008 HMGXB3Q12766 1538 aa25.17■■□□□ 1.62
NPAS3-209ENST00000551008 MROH2BQ7Z745 1585 aa25.14■■□□□ 1.62
NPAS3-209ENST00000551008 PEG3Q9GZU2 1588 aa25.14■■□□□ 1.62
NPAS3-209ENST00000551008 BAZ1BQ9UIG0 1483 aaKnown RBP25■■□□□ 1.59
NPAS3-209ENST00000551008 WIZO95785 1651 aa24.88■■□□□ 1.57
NPAS3-209ENST00000551008 NESP48681 1621 aa24.84■■□□□ 1.57
NPAS3-209ENST00000551008 CHIC1Q5VXU3 224 aa24.71■■□□□ 1.55
NPAS3-209ENST00000551008 ERCC6Q03468 1493 aa24.7■■□□□ 1.55
NPAS3-209ENST00000551008 RSF1Q96T23 1441 aaPredicted RBP24.69■■□□□ 1.54
NPAS3-209ENST00000551008 LAMC3Q9Y6N6 1575 aa24.68■■□□□ 1.54
NPAS3-209ENST00000551008 CUX2O14529 1486 aa24.61■■□□□ 1.53
NPAS3-209ENST00000551008 KIF21AQ7Z4S6 1674 aa24.59■■□□□ 1.53
NPAS3-209ENST00000551008 THOC2Q8NI27 1593 aaKnown RBP24.58■■□□□ 1.52
NPAS3-209ENST00000551008 TOP2AP11388 1531 aaKnown RBP24.54■■□□□ 1.52
NPAS3-209ENST00000551008 CADPSQ9ULU8 1353 aa24.49■■□□□ 1.51
NPAS3-209ENST00000551008 PDS5BQ9NTI5 1447 aa24.43■■□□□ 1.5
NPAS3-209ENST00000551008 CFTRP13569 1480 aa24.33■■□□□ 1.49
NPAS3-209ENST00000551008 MRC2Q9UBG0 1479 aa24.27■■□□□ 1.48
NPAS3-209ENST00000551008 WDR62O43379 1518 aa24.25■■□□□ 1.47
NPAS3-209ENST00000551008 FANCD2Q9BXW9 1451 aa24.25■■□□□ 1.47
NPAS3-209ENST00000551008 PRDM2Q13029 1718 aa24.24■■□□□ 1.47
NPAS3-209ENST00000551008 CCDC88BA6NC98 1476 aa24.24■■□□□ 1.47
NPAS3-209ENST00000551008 CEP164Q9UPV0 1460 aa24.23■■□□□ 1.47
NPAS3-209ENST00000551008 DNAJC5Q9H3Z4 198 aa24.19■■□□□ 1.46
NPAS3-209ENST00000551008 URB2Q14146 1524 aaKnown RBP24.1■■□□□ 1.45
NPAS3-209ENST00000551008 TOPBP1Q92547 1522 aa23.86■■□□□ 1.41
NPAS3-209ENST00000551008 DNMBPQ6XZF7 1577 aa23.8■■□□□ 1.4
NPAS3-209ENST00000551008 ZNF608Q9ULD9 1512 aaPredicted RBP23.73■■□□□ 1.39
NPAS3-209ENST00000551008 ABCC8Q09428 1581 aa23.73■■□□□ 1.39
NPAS3-209ENST00000551008 IFT140Q96RY7 1462 aa23.72■■□□□ 1.39
NPAS3-209ENST00000551008 SUPT5HO00267 1087 aaKnown RBP23.69■■□□□ 1.38
NPAS3-209ENST00000551008 TARBP1Q13395 1621 aaKnown RBP23.69■■□□□ 1.38
NPAS3-209ENST00000551008 EIF4G3O43432 1585 aaKnown RBP23.64■■□□□ 1.37
NPAS3-209ENST00000551008 POLA1P09884 1462 aaPredicted RBP23.63■■□□□ 1.37
NPAS3-209ENST00000551008 CUX1P39880 1505 aa23.6■■□□□ 1.37
NPAS3-209ENST00000551008 RAD54L2Q9Y4B4 1467 aa23.53■■□□□ 1.36
NPAS3-209ENST00000551008 FGD5Q6ZNL6 1462 aa23.52■■□□□ 1.36
NPAS3-209ENST00000551008 AQRO60306 1485 aaKnown RBP eCLIP23.49■■□□□ 1.35
NPAS3-209ENST00000551008 WDR97A6NE52 1622 aa23.47■■□□□ 1.35
NPAS3-209ENST00000551008 SOGA1O94964 1423 aa23.45■■□□□ 1.34
NPAS3-209ENST00000551008 CHD1O14646 1710 aa23.44■■□□□ 1.34
NPAS3-209ENST00000551008 OSCARQ8IYS5 282 aa23.43■■□□□ 1.34
NPAS3-209ENST00000551008 TDRD9Q8NDG6 1382 aaKnown RBP23.38■■□□□ 1.33
NPAS3-209ENST00000551008 BIVM-ERCC5R4GMW8 1640 aa23.33■■□□□ 1.33
NPAS3-209ENST00000551008 SYNJ1O43426 1573 aa23.31■■□□□ 1.32
NPAS3-209ENST00000551008 TOP2BQ02880 1626 aa23.3■■□□□ 1.32
NPAS3-209ENST00000551008 RIMBP3CA6NJZ7 1639 aa23.29■■□□□ 1.32
NPAS3-209ENST00000551008 RIMBP3BA6NNM3 1639 aa23.29■■□□□ 1.32
NPAS3-209ENST00000551008 ABCA5Q8WWZ7 1642 aa23.29■■□□□ 1.32
NPAS3-209ENST00000551008 RIMBP3Q9UFD9 1639 aa23.29■■□□□ 1.32
NPAS3-209ENST00000551008 SNAPC4Q5SXM2 1469 aa23.29■■□□□ 1.32
NPAS3-209ENST00000551008 PBRM1Q86U86 1689 aa23.28■■□□□ 1.32
NPAS3-209ENST00000551008 ABCA10Q8WWZ4 1543 aa23.28■■□□□ 1.32
NPAS3-209ENST00000551008 WRNQ14191 1432 aaPredicted RBP eCLIP23.24■■□□□ 1.31
NPAS3-209ENST00000551008 GRIN2BQ13224 1484 aa23.24■■□□□ 1.31
NPAS3-209ENST00000551008 MAGI1Q96QZ7 1491 aaPredicted RBP23.22■■□□□ 1.31
NPAS3-209ENST00000551008 ARHGEF11O15085 1522 aa23.21■■□□□ 1.31
NPAS3-209ENST00000551008 GAPVD1Q14C86 1478 aa23.2■■□□□ 1.3
NPAS3-209ENST00000551008 TRIM41Q8WV44 630 aa23.2■■□□□ 1.3
NPAS3-209ENST00000551008 CLASP1Q7Z460 1538 aa23.15■■□□□ 1.3
NPAS3-209ENST00000551008 SYNJ2O15056 1496 aa23.13■■□□□ 1.29
NPAS3-209ENST00000551008 FBLN2P98095 1184 aa23.13■■□□□ 1.29
NPAS3-209ENST00000551008 ADAMTS12P58397 1594 aa23.06■■□□□ 1.28
NPAS3-209ENST00000551008 ARAP1Q96P48 1450 aa23.04■■□□□ 1.28
NPAS3-209ENST00000551008 CHMP7Q8WUX9 453 aaPredicted RBP23.02■■□□□ 1.28
NPAS3-209ENST00000551008 ERICH3Q5RHP9 1530 aa22.98■■□□□ 1.27
NPAS3-209ENST00000551008 GRIN2AQ12879 1464 aa22.97■■□□□ 1.27
NPAS3-209ENST00000551008 CEP170Q5SW79 1584 aa22.94■■□□□ 1.26
NPAS3-209ENST00000551008 FHAD1B1AJZ9 1412 aa22.91■■□□□ 1.26
NPAS3-209ENST00000551008 NUP160Q12769 1436 aa22.91■■□□□ 1.26
NPAS3-209ENST00000551008 CYB5RLQ6IPT4 315 aa22.88■■□□□ 1.25
NPAS3-209ENST00000551008 ERCC6L2Q5T890 1561 aa22.84■■□□□ 1.25
NPAS3-209ENST00000551008 SHROOM2Q13796 1616 aa22.83■■□□□ 1.25
NPAS3-209ENST00000551008 RUSC2Q8N2Y8 1516 aa22.74■■□□□ 1.23
NPAS3-209ENST00000551008 CUL7Q14999 1698 aa22.73■■□□□ 1.23
NPAS3-209ENST00000551008 IGF1RP08069 1367 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms