RNA–Protein interactions for RNA: ENST00000550444.1

HCFC2-205, Transcript of host cell factor C2, humanhuman

TSL 4

Gene HCFC2, Length 746 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC2-205ENST00000550444 NISCHQ9Y2I1 1504 aa43.13■■■■■ 4.5
HCFC2-205ENST00000550444 ABCC9O60706 1549 aa39.16■■■■□ 3.86
HCFC2-205ENST00000550444 CCDC180Q9P1Z9 1646 aa38.68■■■■□ 3.78
HCFC2-205ENST00000550444 RB1CC1Q8TDY2 1594 aa37.04■■■■□ 3.52
HCFC2-205ENST00000550444 DNAJC5BQ9UF47 199 aa37.02■■■■□ 3.52
HCFC2-205ENST00000550444 DCAF8L2P0C7V8 631 aa36.81■■■■□ 3.48
HCFC2-205ENST00000550444 NACADO15069 1562 aa36.71■■■■□ 3.47
HCFC2-205ENST00000550444 PABPN1Q86U42 306 aaKnown RBP eCLIP36.53■■■■□ 3.44
HCFC2-205ENST00000550444 UNC13AQ9UPW8 1703 aa36.1■■■■□ 3.37
HCFC2-205ENST00000550444 MYO15BQ96JP2 1530 aa36.07■■■■□ 3.36
HCFC2-205ENST00000550444 BICRAQ9NZM4 1560 aa35.95■■■■□ 3.35
HCFC2-205ENST00000550444 ZCCHC6Q5VYS8 1495 aaKnown RBP35.66■■■■□ 3.3
HCFC2-205ENST00000550444 DCAF1Q9Y4B6 1507 aa35.52■■■■□ 3.28
HCFC2-205ENST00000550444 SHROOM4Q9ULL8 1493 aa35.38■■■■□ 3.25
HCFC2-205ENST00000550444 SCRIBQ14160 1630 aa35.38■■■■□ 3.25
HCFC2-205ENST00000550444 CECR2Q9BXF3 1484 aa35.28■■■■□ 3.24
HCFC2-205ENST00000550444 CC2D2AQ9P2K1 1620 aa35.27■■■■□ 3.24
HCFC2-205ENST00000550444 EIF4G1Q04637 1599 aaKnown RBP35.12■■■■□ 3.21
HCFC2-205ENST00000550444 DNAJC5Q9H3Z4 198 aa34.15■■■■□ 3.06
HCFC2-205ENST00000550444 NCAPD3P42695 1498 aa33.94■■■■□ 3.02
HCFC2-205ENST00000550444 ERCC6Q03468 1493 aa33.83■■■■□ 3.01
HCFC2-205ENST00000550444 ATAD2BQ9ULI0 1458 aa33.82■■■■□ 3.01
HCFC2-205ENST00000550444 CUX2O14529 1486 aa33.76■■■□□ 2.99
HCFC2-205ENST00000550444 SMARCA2P51531 1590 aa33.67■■■□□ 2.98
HCFC2-205ENST00000550444 SMARCA4P51532 1647 aa33.66■■■□□ 2.98
HCFC2-205ENST00000550444 HMGXB3Q12766 1538 aa33.59■■■□□ 2.97
HCFC2-205ENST00000550444 NESP48681 1621 aa33.55■■■□□ 2.96
HCFC2-205ENST00000550444 BAZ1BQ9UIG0 1483 aaKnown RBP33.49■■■□□ 2.95
HCFC2-205ENST00000550444 BAZ1AQ9NRL2 1556 aaPredicted RBP33.48■■■□□ 2.95
HCFC2-205ENST00000550444 PEG3Q9GZU2 1588 aa33.28■■■□□ 2.92
HCFC2-205ENST00000550444 MROH2BQ7Z745 1585 aa33.26■■■□□ 2.92
HCFC2-205ENST00000550444 LAMC3Q9Y6N6 1575 aa33.17■■■□□ 2.9
HCFC2-205ENST00000550444 THOC2Q8NI27 1593 aaKnown RBP33.13■■■□□ 2.89
HCFC2-205ENST00000550444 PDS5BQ9NTI5 1447 aa33.09■■■□□ 2.89
HCFC2-205ENST00000550444 KIF21AQ7Z4S6 1674 aa32.99■■■□□ 2.87
HCFC2-205ENST00000550444 CADPSQ9ULU8 1353 aa32.96■■■□□ 2.87
HCFC2-205ENST00000550444 WIZO95785 1651 aa32.82■■■□□ 2.84
HCFC2-205ENST00000550444 MRC2Q9UBG0 1479 aa32.78■■■□□ 2.84
HCFC2-205ENST00000550444 TRIM41Q8WV44 630 aa32.66■■■□□ 2.82
HCFC2-205ENST00000550444 WDR62O43379 1518 aa32.65■■■□□ 2.82
HCFC2-205ENST00000550444 CEP164Q9UPV0 1460 aa32.61■■■□□ 2.81
HCFC2-205ENST00000550444 FANCD2Q9BXW9 1451 aa32.56■■■□□ 2.8
HCFC2-205ENST00000550444 RSF1Q96T23 1441 aaPredicted RBP32.51■■■□□ 2.79
HCFC2-205ENST00000550444 CFTRP13569 1480 aa32.48■■■□□ 2.79
HCFC2-205ENST00000550444 TOP2AP11388 1531 aaKnown RBP32.37■■■□□ 2.77
HCFC2-205ENST00000550444 OSCARQ8IYS5 282 aa32.33■■■□□ 2.77
HCFC2-205ENST00000550444 URB2Q14146 1524 aaKnown RBP32.3■■■□□ 2.76
HCFC2-205ENST00000550444 CCDC88BA6NC98 1476 aa32.09■■■□□ 2.73
HCFC2-205ENST00000550444 ZNF608Q9ULD9 1512 aaPredicted RBP31.97■■■□□ 2.71
HCFC2-205ENST00000550444 IFT140Q96RY7 1462 aa31.97■■■□□ 2.71
HCFC2-205ENST00000550444 PRDM2Q13029 1718 aa31.95■■■□□ 2.71
HCFC2-205ENST00000550444 TOPBP1Q92547 1522 aa31.9■■■□□ 2.7
HCFC2-205ENST00000550444 RIMBP3CA6NJZ7 1639 aa31.79■■■□□ 2.68
HCFC2-205ENST00000550444 RIMBP3BA6NNM3 1639 aa31.79■■■□□ 2.68
HCFC2-205ENST00000550444 RIMBP3Q9UFD9 1639 aa31.79■■■□□ 2.68
HCFC2-205ENST00000550444 ABCC8Q09428 1581 aa31.79■■■□□ 2.68
HCFC2-205ENST00000550444 DNMBPQ6XZF7 1577 aa31.72■■■□□ 2.67
HCFC2-205ENST00000550444 EIF4G3O43432 1585 aaKnown RBP31.69■■■□□ 2.66
HCFC2-205ENST00000550444 AQRO60306 1485 aaKnown RBP eCLIP31.69■■■□□ 2.66
HCFC2-205ENST00000550444 ARHGEF11O15085 1522 aa31.69■■■□□ 2.66
HCFC2-205ENST00000550444 FBLN2P98095 1184 aa31.66■■■□□ 2.66
HCFC2-205ENST00000550444 CYB5RLQ6IPT4 315 aa31.64■■■□□ 2.66
HCFC2-205ENST00000550444 TARBP1Q13395 1621 aaKnown RBP31.57■■■□□ 2.64
HCFC2-205ENST00000550444 POLA1P09884 1462 aaPredicted RBP31.56■■■□□ 2.64
HCFC2-205ENST00000550444 RAD54L2Q9Y4B4 1467 aa31.51■■■□□ 2.63
HCFC2-205ENST00000550444 SOGA1O94964 1423 aa31.49■■■□□ 2.63
HCFC2-205ENST00000550444 TDRD9Q8NDG6 1382 aaKnown RBP31.48■■■□□ 2.63
HCFC2-205ENST00000550444 CHD1O14646 1710 aa31.48■■■□□ 2.63
HCFC2-205ENST00000550444 TRHP20396 242 aaPredicted RBP31.41■■■□□ 2.62
HCFC2-205ENST00000550444 ARAP1Q96P48 1450 aa31.37■■■□□ 2.61
HCFC2-205ENST00000550444 FGD5Q6ZNL6 1462 aa31.34■■■□□ 2.61
HCFC2-205ENST00000550444 CHMP7Q8WUX9 453 aaPredicted RBP31.33■■■□□ 2.61
HCFC2-205ENST00000550444 SNAPC4Q5SXM2 1469 aa31.32■■■□□ 2.6
HCFC2-205ENST00000550444 CUX1P39880 1505 aa31.25■■■□□ 2.59
HCFC2-205ENST00000550444 GRIN2BQ13224 1484 aa31.19■■■□□ 2.58
HCFC2-205ENST00000550444 WDR97A6NE52 1622 aa31.17■■■□□ 2.58
HCFC2-205ENST00000550444 MAGI1Q96QZ7 1491 aaPredicted RBP31.17■■■□□ 2.58
HCFC2-205ENST00000550444 CLASP1Q7Z460 1538 aa31.13■■■□□ 2.57
HCFC2-205ENST00000550444 SYNJ1O43426 1573 aa31.13■■■□□ 2.57
HCFC2-205ENST00000550444 SYNJ2O15056 1496 aa31.09■■■□□ 2.57
HCFC2-205ENST00000550444 SUPT5HO00267 1087 aaKnown RBP31.07■■■□□ 2.56
HCFC2-205ENST00000550444 GAPVD1Q14C86 1478 aa31.05■■■□□ 2.56
HCFC2-205ENST00000550444 PBRM1Q86U86 1689 aa30.93■■■□□ 2.54
HCFC2-205ENST00000550444 ABCA10Q8WWZ4 1543 aa30.93■■■□□ 2.54
HCFC2-205ENST00000550444 ABCA5Q8WWZ7 1642 aa30.85■■■□□ 2.53
HCFC2-205ENST00000550444 WRNQ14191 1432 aaPredicted RBP eCLIP30.82■■■□□ 2.52
HCFC2-205ENST00000550444 GRIN2AQ12879 1464 aa30.76■■■□□ 2.52
HCFC2-205ENST00000550444 ERCC6L2Q5T890 1561 aa30.7■■■□□ 2.5
HCFC2-205ENST00000550444 AEBP2Q6ZN18 517 aaPredicted RBP30.68■■■□□ 2.5
HCFC2-205ENST00000550444 ADAMTS12P58397 1594 aa30.66■■■□□ 2.5
HCFC2-205ENST00000550444 NUP160Q12769 1436 aa30.65■■■□□ 2.5
HCFC2-205ENST00000550444 CEP170Q5SW79 1584 aa30.65■■■□□ 2.5
HCFC2-205ENST00000550444 FHAD1B1AJZ9 1412 aa30.64■■■□□ 2.5
HCFC2-205ENST00000550444 TOP2BQ02880 1626 aa30.63■■■□□ 2.49
HCFC2-205ENST00000550444 BIVM-ERCC5R4GMW8 1640 aa30.6■■■□□ 2.49
HCFC2-205ENST00000550444 ERICH3Q5RHP9 1530 aa30.52■■■□□ 2.48
HCFC2-205ENST00000550444 JPH4Q96JJ6 628 aa30.48■■■□□ 2.47
HCFC2-205ENST00000550444 SHROOM2Q13796 1616 aa30.47■■■□□ 2.47
HCFC2-205ENST00000550444 PRG4Q92954 1404 aaPredicted RBP30.47■■■□□ 2.47
HCFC2-205ENST00000550444 NPM1P06748 294 aaKnown RBP eCLIP30.3■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms