RNA–Protein interactions for RNA: ENST00000550228.5

GPN3-207, Transcript of GPN-loop GTPase 3, humanhuman

TSL 3

Gene GPN3, Length 353 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPN3-207ENST00000550228 NISCHQ9Y2I1 1504 aa19.04■□□□□ 0.64
GPN3-207ENST00000550228 CCDC180Q9P1Z9 1646 aa16.78■□□□□ 0.28
GPN3-207ENST00000550228 ABCC9O60706 1549 aa16.11■□□□□ 0.17
GPN3-207ENST00000550228 ZCCHC6Q5VYS8 1495 aaKnown RBP15.95■□□□□ 0.14
GPN3-207ENST00000550228 DCAF8L2P0C7V8 631 aa15.83■□□□□ 0.12
GPN3-207ENST00000550228 DCAF1Q9Y4B6 1507 aa15.72■□□□□ 0.11
GPN3-207ENST00000550228 NACADO15069 1562 aa15.66■□□□□ 0.1
GPN3-207ENST00000550228 MYO15BQ96JP2 1530 aa15.63■□□□□ 0.09
GPN3-207ENST00000550228 RB1CC1Q8TDY2 1594 aa15.62■□□□□ 0.09
GPN3-207ENST00000550228 SCRIBQ14160 1630 aa15.41■□□□□ 0.06
GPN3-207ENST00000550228 SHROOM4Q9ULL8 1493 aa15.38■□□□□ 0.05
GPN3-207ENST00000550228 UNC13AQ9UPW8 1703 aa15.32■□□□□ 0.04
GPN3-207ENST00000550228 BICRAQ9NZM4 1560 aa15.13■□□□□ 0.01
GPN3-207ENST00000550228 PABPN1Q86U42 306 aaKnown RBP eCLIP15.11■□□□□ 0.01
GPN3-207ENST00000550228 CECR2Q9BXF3 1484 aa14.82□□□□□ -0.04
GPN3-207ENST00000550228 BAZ1AQ9NRL2 1556 aaPredicted RBP14.73□□□□□ -0.05
GPN3-207ENST00000550228 SMARCA4P51532 1647 aa14.73□□□□□ -0.05
GPN3-207ENST00000550228 EIF4G1Q04637 1599 aaKnown RBP14.71□□□□□ -0.05
GPN3-207ENST00000550228 MROH2BQ7Z745 1585 aa14.71□□□□□ -0.05
GPN3-207ENST00000550228 RSF1Q96T23 1441 aaPredicted RBP14.65□□□□□ -0.06
GPN3-207ENST00000550228 SUPT5HO00267 1087 aaKnown RBP14.63□□□□□ -0.07
GPN3-207ENST00000550228 WIZO95785 1651 aa14.6□□□□□ -0.07
GPN3-207ENST00000550228 CC2D2AQ9P2K1 1620 aa14.57□□□□□ -0.08
GPN3-207ENST00000550228 SMARCA2P51531 1590 aa14.52□□□□□ -0.08
GPN3-207ENST00000550228 ATAD2BQ9ULI0 1458 aa14.52□□□□□ -0.08
GPN3-207ENST00000550228 PEG3Q9GZU2 1588 aa14.51□□□□□ -0.09
GPN3-207ENST00000550228 BAZ1BQ9UIG0 1483 aaKnown RBP14.45□□□□□ -0.1
GPN3-207ENST00000550228 TOP2AP11388 1531 aaKnown RBP14.43□□□□□ -0.1
GPN3-207ENST00000550228 HMGXB3Q12766 1538 aa14.42□□□□□ -0.1
GPN3-207ENST00000550228 NCAPD3P42695 1498 aa14.42□□□□□ -0.1
GPN3-207ENST00000550228 DNAJC5BQ9UF47 199 aa14.4□□□□□ -0.1
GPN3-207ENST00000550228 CCDC88BA6NC98 1476 aa14.25□□□□□ -0.13
GPN3-207ENST00000550228 NESP48681 1621 aa14.04□□□□□ -0.16
GPN3-207ENST00000550228 CADPSQ9ULU8 1353 aa14.04□□□□□ -0.16
GPN3-207ENST00000550228 CFTRP13569 1480 aa14.04□□□□□ -0.16
GPN3-207ENST00000550228 PRDM2Q13029 1718 aa14.03□□□□□ -0.16
GPN3-207ENST00000550228 LAMC3Q9Y6N6 1575 aa14.01□□□□□ -0.17
GPN3-207ENST00000550228 FANCD2Q9BXW9 1451 aa13.92□□□□□ -0.18
GPN3-207ENST00000550228 KIF21AQ7Z4S6 1674 aa13.91□□□□□ -0.18
GPN3-207ENST00000550228 ABCC8Q09428 1581 aa13.9□□□□□ -0.18
GPN3-207ENST00000550228 PDS5BQ9NTI5 1447 aa13.9□□□□□ -0.19
GPN3-207ENST00000550228 CEP164Q9UPV0 1460 aa13.87□□□□□ -0.19
GPN3-207ENST00000550228 ERCC6Q03468 1493 aa13.86□□□□□ -0.19
GPN3-207ENST00000550228 CHIC1Q5VXU3 224 aa13.83□□□□□ -0.2
GPN3-207ENST00000550228 WRNQ14191 1432 aaPredicted RBP eCLIP13.81□□□□□ -0.2
GPN3-207ENST00000550228 SYNJ1O43426 1573 aa13.79□□□□□ -0.2
GPN3-207ENST00000550228 CUX1P39880 1505 aa13.78□□□□□ -0.2
GPN3-207ENST00000550228 MRC2Q9UBG0 1479 aa13.77□□□□□ -0.21
GPN3-207ENST00000550228 DNMBPQ6XZF7 1577 aa13.76□□□□□ -0.21
GPN3-207ENST00000550228 URB2Q14146 1524 aaKnown RBP13.76□□□□□ -0.21
GPN3-207ENST00000550228 TRIM41Q8WV44 630 aa13.76□□□□□ -0.21
GPN3-207ENST00000550228 BIVM-ERCC5R4GMW8 1640 aa13.75□□□□□ -0.21
GPN3-207ENST00000550228 TOP2BQ02880 1626 aa13.75□□□□□ -0.21
GPN3-207ENST00000550228 THOC2Q8NI27 1593 aaKnown RBP13.74□□□□□ -0.21
GPN3-207ENST00000550228 TOPBP1Q92547 1522 aa13.74□□□□□ -0.21
GPN3-207ENST00000550228 WDR62O43379 1518 aa13.69□□□□□ -0.22
GPN3-207ENST00000550228 FGD5Q6ZNL6 1462 aa13.67□□□□□ -0.22
GPN3-207ENST00000550228 POLA1P09884 1462 aaPredicted RBP13.64□□□□□ -0.23
GPN3-207ENST00000550228 RAD54L2Q9Y4B4 1467 aa13.61□□□□□ -0.23
GPN3-207ENST00000550228 SOGA1O94964 1423 aa13.58□□□□□ -0.24
GPN3-207ENST00000550228 CUX2O14529 1486 aa13.57□□□□□ -0.24
GPN3-207ENST00000550228 WDR97A6NE52 1622 aa13.56□□□□□ -0.24
GPN3-207ENST00000550228 TARBP1Q13395 1621 aaKnown RBP13.56□□□□□ -0.24
GPN3-207ENST00000550228 FAM9AQ8IZU1 332 aaPredicted RBP13.54□□□□□ -0.24
GPN3-207ENST00000550228 IFT140Q96RY7 1462 aa13.54□□□□□ -0.24
GPN3-207ENST00000550228 ABCA10Q8WWZ4 1543 aa13.53□□□□□ -0.24
GPN3-207ENST00000550228 RUSC2Q8N2Y8 1516 aa13.52□□□□□ -0.25
GPN3-207ENST00000550228 KIF27Q86VH2 1401 aa13.48□□□□□ -0.25
GPN3-207ENST00000550228 TDRD9Q8NDG6 1382 aaKnown RBP13.48□□□□□ -0.25
GPN3-207ENST00000550228 ZNF608Q9ULD9 1512 aaPredicted RBP13.48□□□□□ -0.25
GPN3-207ENST00000550228 ABCA5Q8WWZ7 1642 aa13.47□□□□□ -0.25
GPN3-207ENST00000550228 EEA1Q15075 1411 aa13.46□□□□□ -0.26
GPN3-207ENST00000550228 EIF4G3O43432 1585 aaKnown RBP13.45□□□□□ -0.26
GPN3-207ENST00000550228 PBRM1Q86U86 1689 aa13.44□□□□□ -0.26
GPN3-207ENST00000550228 AQRO60306 1485 aaKnown RBP eCLIP13.44□□□□□ -0.26
GPN3-207ENST00000550228 GAPVD1Q14C86 1478 aa13.44□□□□□ -0.26
GPN3-207ENST00000550228 CSRNP3Q8WYN3 585 aa13.39□□□□□ -0.27
GPN3-207ENST00000550228 GRIN2BQ13224 1484 aa13.38□□□□□ -0.27
GPN3-207ENST00000550228 EHMT2Q96KQ7 1210 aa13.38□□□□□ -0.27
GPN3-207ENST00000550228 ERICH3Q5RHP9 1530 aa13.37□□□□□ -0.27
GPN3-207ENST00000550228 IGF1RP08069 1367 aa13.36□□□□□ -0.27
GPN3-207ENST00000550228 CUL7Q14999 1698 aa13.35□□□□□ -0.27
GPN3-207ENST00000550228 SNAPC4Q5SXM2 1469 aa13.35□□□□□ -0.27
GPN3-207ENST00000550228 ADAMTS12P58397 1594 aa13.33□□□□□ -0.28
GPN3-207ENST00000550228 KIF21BO75037 1637 aa13.33□□□□□ -0.28
GPN3-207ENST00000550228 CARMIL1Q5VZK9 1371 aa13.32□□□□□ -0.28
GPN3-207ENST00000550228 PRXQ9BXM0 1461 aa13.3□□□□□ -0.28
GPN3-207ENST00000550228 MAGI1Q96QZ7 1491 aaPredicted RBP13.29□□□□□ -0.28
GPN3-207ENST00000550228 RAPGEF2Q9Y4G8 1499 aa13.29□□□□□ -0.28
GPN3-207ENST00000550228 LOC105371045A0A1W2PR82 267 aa13.29□□□□□ -0.28
GPN3-207ENST00000550228 GOLGA3Q08378 1498 aa13.29□□□□□ -0.28
GPN3-207ENST00000550228 FHAD1B1AJZ9 1412 aa13.28□□□□□ -0.28
GPN3-207ENST00000550228 CHD1O14646 1710 aa13.25□□□□□ -0.29
GPN3-207ENST00000550228 SYNJ2O15056 1496 aa13.24□□□□□ -0.29
GPN3-207ENST00000550228 FBLN2P98095 1184 aa13.24□□□□□ -0.29
GPN3-207ENST00000550228 UBTFP17480 764 aaKnown RBP13.23□□□□□ -0.29
GPN3-207ENST00000550228 CHMP7Q8WUX9 453 aaPredicted RBP13.22□□□□□ -0.29
GPN3-207ENST00000550228 GRIN2AQ12879 1464 aa13.22□□□□□ -0.29
GPN3-207ENST00000550228 CTTNBP2Q8WZ74 1663 aa13.19□□□□□ -0.3
GPN3-207ENST00000550228 TNIKQ9UKE5 1360 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 1099.5 ms